Datasets:

---

anderdnavarro

/

OncoGAN-syntheticVCFs

like 2

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 7 new columns ({'class', 'from_allele', 'event_id', 'index', 'allele', 'to_allele', 'major_minor'}) and 7 missing columns ({'minor_cn', 'chrom', 'start', 'major_cn', 'end', 'study', 'donor_id'}).

This happened while the csv dataset builder was generating data using

hf://datasets/anderdnavarro/OncoGAN-syntheticVCFs/CNA-driven VCFs/Breast-AdenoCa/cna_sv/Breast-AdenoCa_sim100_events_order.tsv (at revision f6f8f5911688c291a710b8365f43c9fd0d2ee5c1)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 643, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2241, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              index: int64
              class: string
              cna_id: string
              major_minor: string
              event_id: string
              allele: string
              from_allele: string
              to_allele: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1181
              to
              {'chrom': Value(dtype='string', id=None), 'start': Value(dtype='int64', id=None), 'end': Value(dtype='int64', id=None), 'major_cn': Value(dtype='int64', id=None), 'minor_cn': Value(dtype='int64', id=None), 'donor_id': Value(dtype='string', id=None), 'study': Value(dtype='string', id=None), 'cna_id': Value(dtype='string', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1436, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1053, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 925, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1001, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1873, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 7 new columns ({'class', 'from_allele', 'event_id', 'index', 'allele', 'to_allele', 'major_minor'}) and 7 missing columns ({'minor_cn', 'chrom', 'start', 'major_cn', 'end', 'study', 'donor_id'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/anderdnavarro/OncoGAN-syntheticVCFs/CNA-driven VCFs/Breast-AdenoCa/cna_sv/Breast-AdenoCa_sim100_events_order.tsv (at revision f6f8f5911688c291a710b8365f43c9fd0d2ee5c1)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)