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image imagewidth (px) 1.96k 4.25k | objects dict |
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End of preview. Expand in Data Studio
ParasitoBank: Dataset of helminths and protozoa in coprology samples
A dataset of microscopy images for parasite detection in stool samples, containing bounding box annotations for multiple parasite species.
Description
This dataset contains 779 images of the visual field from fresh fecal samples analyzed under the microscope. These images were acquired using a Motorola G84 cellphone at resolutions of 3,072 x 3,072 pixels and 3,072 x 4,080 pixels. Parasite content was labeled by outlining regions, resulting in a total of 1,620 intestinal parasites, with a particular focus on intestinal protozoa. Through image processing, non-informative and noisy regions that did not provide relevant information within the visual field were removed, yielding images with an approximately 1:1 aspect ratio and a resolution of 2,100 x 2,100 pixels.
Structure
Each row has two fields:
| field | type | description |
|---|---|---|
image |
Image |
Microscopy image |
objects |
Sequence |
List of annotations for that image |
objects sub-fields:
| sub-field | type | description |
|---|---|---|
bbox |
Sequence(float32) |
Bounding box in COCO format [x, y, width, height] |
label |
ClassLabel |
0-based class index (names embedded in schema) |
area |
float32 |
Bounding box area in pixels² |
Labels
| id | label |
|---|---|
| 0 | chillomastix |
| 1 | giardia |
| 2 | entamoebaColi |
| 3 | entamoebaHart |
| 4 | endolimaxNana |
| 5 | iodamoeba |
| 6 | blastocystis |
| 7 | complejoEntamoeba |
| 8 | coccidia |
| 9 | ascarisLumbricoides |
| 10 | taenia |
| 11 | tricocefalo |
| 12 | strongyloides |
Notes
bboxis in COCO format:[x, y, width, height]labelis stored as aClassLabel- Original COCO category ids are 1-based; they are mapped to 0-based indices here
Usage
from datasets import load_dataset
ds = load_dataset("andsfonseca/parasito-bank")
labels = ds["train"].features["objects"]["label"].feature
print(labels.names)
print(ds["train"][0])
Attribution
This dataset is derived from ParasitoBank: Dataset of helminths and protozoa in coprology samples.
Original dataset authors: Jader Alejandro Muñoz Galindez, Luis Reinel Vásquez Arteaga, Rubiel Vargas-Canas
Use the following citation when referring to this dataset:
Muñoz Galindez, Jader Alejandro; Vásquez Arteaga, Luis Reinel; Vargas-Canas, Rubiel (2024), “ParasitoBank: Dataset of helminths and protozoa in coprology samples”, Mendeley Data, V1, doi: 10.17632/725hpzpwzf.1
License: CC BY 4.0
https://creativecommons.org/licenses/by/4.0/
Modifications
- Converted to Hugging Face format
Disclaimer
This dataset is a redistribution of ParasitoBank. We do not claim ownership of the original data.
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