id stringlengths 7 14 | test_class dict | test_case dict | focal_class dict | focal_method dict | repository dict |
|---|---|---|---|---|---|
23831132_96 | {
"fields": [],
"file": "modules/bluima_pubmed_ws/src/test/java/ch/epfl/bbp/uima/pubmed/PubmedSearchTest.java",
"identifier": "PubmedSearchTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testNeuron() throws Exception {\n List<PubmedArticleType> articles = Lists\n .newArrayList(new PubmedSearch().search(\"axon\", 5));\n assertEquals(5, articles.size());\n }",
"class_method_signature": "PubmedSearchTest.testNeuron()",
"constructor": ... | {
"fields": [
{
"declarator": "LOG = LoggerFactory.getLogger(PubmedSearch.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = LoggerFactory.getLogger(PubmedSearch.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"declarator": "servic... | {
"body": "public Iterator<PubmedArticleType> search(String query)\n\t\t\tthrows RemoteException {\n\t\treturn search(query, Integer.MAX_VALUE);\n\t}",
"class_method_signature": "PubmedSearch.search(String query)",
"constructor": false,
"full_signature": "public Iterator<PubmedArticleType> search(String query)"... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_79 | {
"fields": [
{
"declarator": "LOG = getLogger(LexicaHelperTest.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(LexicaHelperTest.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_lexica/src/test/java/ch... | {
"body": "@Test\n public void testAlternateTokenization() throws Exception {\n\n JcasPipelineBuilder pipeline = new JcasPipelineBuilder();\n pipeline.add(LexicaHelper.getConceptMapper(\"blueonto1/disease\"));\n\n // String test = \"Taybi-Linder\";\n String test = \"Cayler cardiofacial ... | {
"fields": [
{
"declarator": "LEXICA_ROOT = BlueUima.BLUE_UIMA_ROOT\n + \"modules/bluima_lexica/\"",
"modifier": "public final static",
"original_string": "public final static String LEXICA_ROOT = BlueUima.BLUE_UIMA_ROOT\n + \"modules/bluima_lexica/\";",
"type": "Str... | {
"body": "@SuppressWarnings(\"unchecked\")\n public static AnalysisEngineDescription getConceptMapper(String path,\n String[] args) throws UIMAException, IOException, SAXException {\n\n String conceptMapper = LEXICA_ROOT + \"desc/\" + path\n + \"ConceptMapper.xml\";\n if (!... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_55 | {
"fields": [],
"file": "modules/bluima_utils/src/test/java/ch/epfl/bbp/uima/filter/MeasureNormalizerAnnotatorTest.java",
"identifier": "MeasureNormalizerAnnotatorTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n // Checks MEASURE_ is removed from keeps if option set to true\n public void testRemoveMeasure_() throws Exception {\n JCas jCas = getTestCas(\"20\");\n\n Measure m = createAnnot(jCas, Measure.class, 0, 1);\n m.setValue(20f);\n m.setUnit(\"\");\n createAnnot... | {
"fields": [
{
"declarator": "MEASURE_MASK = \"MEASURE___\"",
"modifier": "public static final",
"original_string": "public static final String MEASURE_MASK = \"MEASURE___\";",
"type": "String",
"var_name": "MEASURE_MASK"
},
{
"declarator": "MEASURE_DATE = \"Date\"",
... | {
"body": "@Override\n public void process(JCas jCas) throws AnalysisEngineProcessException {\n\n // An array is needed because when a Keep is removed, the collection\n // fails\n Keep[] keeps = select(jCas, Keep.class).toArray(new Keep[0]);\n\n for (int i = 0; i < keeps.length; i++) {\... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_114 | {
"fields": [],
"file": "utils/blue_commons/src/test/java/ch/epfl/bbp/collections/DefaultHashMapTest.java",
"identifier": "DefaultHashMapTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void test() {\n Map<String, List<String>> dm = new DefaultHashMap<String, List<String>>(\n ArrayList.class);\n dm.get(\"nokey\").add(\"one\");\n dm.get(\"nokey\").add(\"two\");\n assertEquals(2, dm.get(\"nokey\").size());\n assertEquals(0,... | {
"fields": [
{
"declarator": "serialVersionUID = 1L",
"modifier": "private static final",
"original_string": "private static final long serialVersionUID = 1L;",
"type": "long",
"var_name": "serialVersionUID"
},
{
"declarator": "cls",
"modifier": "private final",
... | {
"body": "@SuppressWarnings(\"unchecked\")\n @Override\n public V get(Object key) {\n V value = super.get(key);\n if (value == null) {\n if (defaultValue == null) {\n try {\n value = cls.newInstance();\n } catch (Exception e) {\n ... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_43 | {
"fields": [],
"file": "modules/bluima_mongodb/src/test/java/ch/epfl/bbp/uima/mongo/MongoUtilsTest.java",
"identifier": "MongoUtilsTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testAddFlag() throws Exception {\n String[] conn = MongoTest.getTestConn(\"MongoAddFlag\");\n\n MongoConnection mongo = new MongoConnection(conn);\n MongoUtils.addFlag(17, \"blih\", mongo);\n MongoUtils.addFlag(18, \"blih\", mongo);\n MongoUtils.add... | {
"fields": [],
"file": "modules/bluima_mongodb/src/main/java/ch/epfl/bbp/uima/mongo/MongoUtils.java",
"identifier": "MongoUtils",
"interfaces": "",
"methods": [
{
"class_method_signature": "MongoUtils.addFlag(int pmid, String flag, MongoConnection mongo)",
"constructor": false,
"full_si... | {
"body": "public static void addFlag(int pmid, String flag, MongoConnection mongo) {\n BasicDBObject updateQuery = new BasicDBObject(ID, pmid + \"\");\n BasicDBObject fList = new BasicDBObject(MongoFieldMapping.FILTER,\n new BasicDBObject(flag, 1));\n mongo.coll.update(updateQuery... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_102 | {
"fields": [],
"file": "modules/bluima_pubmed_ws/src/test/java/ch/epfl/bbp/uima/pubmed/CitationParserTest.java",
"identifier": "CitationParserTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n @Ignore// will use GroBid\n public void test() throws Exception {\n Citation c = new CitationParser()\n .parse(\"Thomson AM & Bannister A. Postsynaptic pyramidal target selection by descending layer III pyramidal axons: dual intracellular recordings and biocytin filling ... | {
"fields": [
{
"declarator": "client",
"modifier": "private",
"original_string": "private HttpClient client;",
"type": "HttpClient",
"var_name": "client"
},
{
"declarator": "url = \"http://freecite.library.brown.edu/citations/create\"",
"modifier": "final static"... | {
"body": "public Citation parse(String citationStr) throws HttpException,\n IOException, ParserConfigurationException, SAXException {\n\n PostMethod method = new PostMethod(url);\n method.addRequestHeader(\"accept\", \"text/xml\");\n method.addParameter(\"citation\", citationStr);\n\n... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_14 | {
"fields": [
{
"declarator": "EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>())",
"modifier": "static final",
"original_string": "static final IteratorWithPrevious<String> EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>());",
... | {
"body": "@Test\n public void testWrongIndentation() throws Exception {\n Pair<List<Object>, String> params = PipelineScriptParser\n .parseParams(new IteratorWithPrevious<String>(newArrayList(\n \" a: bla\", \"b: bli\")));\n assertEquals(\n \"only... | {
"fields": [
{
"declarator": "LOG = getLogger(PipelineScriptParser.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(PipelineScriptParser.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_scripting/src/m... | {
"body": "static Pair<List<Object>, String> parseParams(\n IteratorWithPrevious<String> it) throws ParseException {\n List<Object> params = new ArrayList<Object>();\n String xml = \"\";\n while (it.hasNext()) {\n String current = it.next();\n if (StringUtils.isBl... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_122 | {
"fields": [],
"file": "utils/blue_commons/src/test/java/ch/epfl/bbp/FileParseUtilsTest.java",
"identifier": "FileParseUtilsTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test(expected = NumberFormatException.class)\n public void testWrongInput3() {\n parseToIntegerList(\"d\", \" \");\n }",
"class_method_signature": "FileParseUtilsTest.testWrongInput3()",
"constructor": false,
"full_signature": "@Test(expected = NumberFormatException.class) public void t... | {
"fields": [],
"file": "utils/blue_commons/src/main/java/ch/epfl/bbp/FileParseUtils.java",
"identifier": "FileParseUtils",
"interfaces": "",
"methods": [
{
"class_method_signature": "FileParseUtils.parseToDoubleList(String txt, String separator)",
"constructor": false,
"full_signature":... | {
"body": "public static List<Integer> parseToIntegerList(String txt, String separator) {\n if (txt.length() == 0)\n return new ArrayList<Integer>();\n String[] split = txt.trim().split(separator);\n List<Integer> ret = new ArrayList<Integer>(split.length);\n for (String s : spl... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_63 | {
"fields": [],
"file": "modules/bluima_utils/src/test/java/ch/epfl/bbp/uima/utils/PlingStemmerTest.java",
"identifier": "PlingStemmerTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void test() throws Exception {\n assertEquals(\"word\", PlingStemmer.stem(\"word\"));\n assertEquals(\"word\", PlingStemmer.stem(\"words\"));\n assertEquals(\"playing\", PlingStemmer.stem(\"playing\"));\n assertEquals(\"fly\", PlingStemmer.stem(\"flies\"));\n ... | {
"fields": [],
"file": "modules/bluima_utils/src/main/java/ch/epfl/bbp/uima/utils/PlingStemmer.java",
"identifier": "PlingStemmer",
"interfaces": "implements Stemmer",
"methods": [
{
"class_method_signature": "PlingStemmer.stem(String token)",
"constructor": false,
"full_signature": "@O... | {
"body": "@Override\n public String stem(String token) {\n\treturn javatools.parsers.PlingStemmer.stem(token);\n }",
"class_method_signature": "PlingStemmer.stem(String token)",
"constructor": false,
"full_signature": "@Override public String stem(String token)",
"identifier": "stem",
"invocations": ... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_34 | {
"fields": [],
"file": "modules/bluima_commons/src/test/java/ch/epfl/bbp/uima/ae/BioLemmatizerNormalizerAnnotatorTest.java",
"identifier": "BioLemmatizerNormalizerAnnotatorTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testOnlyTokens() throws Exception{\n JCas jCas = UimaTests.getTestCas(\"is regulated\");\n\n Measure m = createAnnot(jCas, Measure.class, 0, 1);\n m.setUnit(\"%\");\n m.setValue(20f);\n Keep k = createAnnot(jCas, Keep.class, 0, 1);\n k.setEnc... | {
"fields": [
{
"declarator": "LOG = LoggerFactory\n .getLogger(BioLemmatizerNormalizerAnnotator.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = LoggerFactory\n .getLogger(BioLemmatizerNormalizerAnnotator.class);",
"type": "Logge... | {
"body": "@Override\n public void process(JCas jCas) throws AnalysisEngineProcessException {\n\n for (Keep k : select(jCas, Keep.class)) {\n\n Annotation a = k.getEnclosedAnnot(); \n String normalized = null;\n \n // sometimes, Tokens already have a lemma form,... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_22 | {
"fields": [
{
"declarator": "EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>())",
"modifier": "static final",
"original_string": "static final IteratorWithPrevious<String> EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>());",
... | {
"body": "@Test\n public void testParseValidPipelines() throws Exception {\n\n for (String validPipeline : newArrayList(//\n \"valid1_simple.pipeline\", //\n \"valid2_arguments.pipeline\", //\n \"valid3_complex.pipeline\", //\n \"valid4_collapsed.... | {
"fields": [
{
"declarator": "LOG = getLogger(PipelineScriptParser.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(PipelineScriptParser.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_scripting/src/m... | {
"body": "public static Pipeline parse(File scriptFile) throws ParseException,\n IOException {\n return parse(scriptFile, null);\n }",
"class_method_signature": "PipelineScriptParser.parse(File scriptFile)",
"constructor": false,
"full_signature": "public static Pipeline parse(File scriptF... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_75 | {
"fields": [],
"file": "modules/bluima_regions/src/test/java/w/ch/epfl/bbp/nlp/br/normalize/NormalizeTest.java",
"identifier": "NormalizeTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n // see table 1: Modifier Descriptions and Examples\n public void testTable1() throws Exception {\n\n Normalize n = new Normalize();\n\n assertTrue(n.processMentionString(\n \"Dorsal and posterior hypothalamic areas\").contains(\n \"dorsal hypothalam... | {
"fields": [
{
"declarator": "editors = new LinkedList<MentionEditor>()",
"modifier": "",
"original_string": "List<MentionEditor> editors = new LinkedList<MentionEditor>();",
"type": "List<MentionEditor>",
"var_name": "editors"
}
],
"file": "modules/bluima_regions/src/main/j... | {
"body": "public Set<String> processMentionString(String mention) {\n Set<String> result = new HashSet<String>();\n result.add(mention);\n for (MentionEditor editor : editors) {\n Set<String> newResult = new HashSet<String>();\n for (String mentionEdit : result) {\n ... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_59 | {
"fields": [],
"file": "modules/bluima_utils/src/test/java/ch/epfl/bbp/uima/utils/StructuredDirectoryTest.java",
"identifier": "StructuredDirectoryTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testGetSplit() {\n assertArrayEquals(new int[] { 2, 345, 678 },\n StructuredDirectory.getSplit(2345678));\n assertArrayEquals(new int[] { 22, 345, 678 },\n StructuredDirectory.getSplit(22345678));\n assertArrayEquals(new int[] { 0, 1... | {
"fields": [],
"file": "modules/bluima_utils/src/main/java/ch/epfl/bbp/uima/utils/StructuredDirectory.java",
"identifier": "StructuredDirectory",
"interfaces": "",
"methods": [
{
"class_method_signature": "StructuredDirectory.getSplit(int docId)",
"constructor": false,
"full_signature":... | {
"body": "public static int[] getSplit(int docId) {\n if (docId <= 0) {\n throw new IllegalArgumentException(\"docId must be positive\");\n }\n int[] ret = new int[3];\n ret[0] = docId / 1000000;\n ret[1] = (docId % 1000000) / 1000;\n ret[2] = docId % 1000;\n ... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_118 | {
"fields": [],
"file": "utils/blue_commons/src/test/java/ch/epfl/bbp/triechar/TrieDataTest.java",
"identifier": "TrieDataTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n\tpublic void testIterate() {\n\t\t\n\t\tTrieData<Integer> t = new TrieData<Integer>();\n\t\tt.addWord(\"1\", 1);\n\t\tt.addWord(\"2\", 2);\n\t\tt.addWord(\"100\", 100);\n\t\tt.addWord(\"1000\", 1000);\n\t\t\n\t\tfor (TrieNodeData<Integer> trieNodeData : t) {\n\t\t\tSystem.out.println(trieNodeData);... | {
"fields": [
{
"declarator": "serialVersionUID = 1L",
"modifier": "private static final",
"original_string": "private static final long serialVersionUID = 1L;",
"type": "long",
"var_name": "serialVersionUID"
},
{
"declarator": "root",
"modifier": "private",
... | {
"body": "public void addWord(String word, T data) {\n if (!caseSensitive)\n word = word.toLowerCase();\n root.addWord(root, word.toCharArray(), data);\n }",
"class_method_signature": "TrieData.addWord(String word, T data)",
"constructor": false,
"full_signature": "public void addWo... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_18 | {
"fields": [
{
"declarator": "EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>())",
"modifier": "static final",
"original_string": "static final IteratorWithPrevious<String> EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>());",
... | {
"body": "@Test\n public void testParseAe2() throws Exception {\n PipelineScriptParser.parseAE(\"ae: \"\n + WhitespaceTokenizerAnnotator.class.getSimpleName(),\n EMPTY_ARGS, new Pipeline());\n }",
"class_method_signature": "PipelineScriptParserTest.testParseAe2()",
"con... | {
"fields": [
{
"declarator": "LOG = getLogger(PipelineScriptParser.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(PipelineScriptParser.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_scripting/src/m... | {
"body": "@SuppressWarnings(\"unchecked\")\n static void parseAE(String line, IteratorWithPrevious<String> it,\n Pipeline pipeline) throws ParseException {\n LOG.info(\"+-parsing line '{}'\", line);\n\n String aeName = line.replaceFirst(\"ae: \", \"\").trim();\n if (aeName.endsWith... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_2 | {
"fields": [],
"file": "modules/bluima_xml/src/test/java/ch/epfl/bbp/uima/xml/bams/BamsOntologyParserTest.java",
"identifier": "BamsOntologyParserTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void test() throws Exception {\n BamsOntologyParser.parse();\n\n }",
"class_method_signature": "BamsOntologyParserTest.test()",
"constructor": false,
"full_signature": "@Test public void test()",
"identifier": "test",
"invocations": [
"parse"
],
"modifiers": "@... | {
"fields": [
{
"declarator": "LOG = getLogger(BamsOntologyParser.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(BamsOntologyParser.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"declarator": "onto = new File(\n ... | {
"body": "public static BamsOntology parse() throws JDOMException, IOException {\n return parse(onto);\n }",
"class_method_signature": "BamsOntologyParser.parse()",
"constructor": false,
"full_signature": "public static BamsOntology parse()",
"identifier": "parse",
"invocations": [
"parse"
... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_3 | {
"fields": [],
"file": "modules/bluima_xml/src/test/java/ch/epfl/bbp/uima/xml/PubmedXmlParserTest.java",
"identifier": "PubmedXmlParserTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testParsePubmedXml() throws Exception {\n\n InputStream is = ResourceHelper\n .getInputStream(\"pubmed_abstracts/16205164.xml\");\n PubmedArticle art = new PubmedXmlParser().parseAsArticle(is);\n\n assertEquals(\n \"High rate of join... | {
"fields": [
{
"declarator": "LOG = LoggerFactory.getLogger(PubmedXmlParser.class)",
"modifier": "",
"original_string": "Logger LOG = LoggerFactory.getLogger(PubmedXmlParser.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"declarator": "unmarshaller",
"modifie... | {
"body": "public PubmedArticle parseAsArticle(InputStream is) {\n try {\n PubmedArticleSet parse = parse(is);\n return (PubmedArticle) parse.getPubmedArticleOrPubmedBookArticle()\n .get(0);\n } catch (Exception e) {\n return null;\n }\n }",
... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_19 | {
"fields": [
{
"declarator": "EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>())",
"modifier": "static final",
"original_string": "static final IteratorWithPrevious<String> EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>());",
... | {
"body": "@Test\n public void testParseAe_fromCleanup() throws Exception {\n PipelineScriptParser.parseAE(\"ae: \" + BartWriter.class.getName(),\n EMPTY_ARGS, new Pipeline());\n }",
"class_method_signature": "PipelineScriptParserTest.testParseAe_fromCleanup()",
"constructor": false,
... | {
"fields": [
{
"declarator": "LOG = getLogger(PipelineScriptParser.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(PipelineScriptParser.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_scripting/src/m... | {
"body": "@SuppressWarnings(\"unchecked\")\n static void parseAE(String line, IteratorWithPrevious<String> it,\n Pipeline pipeline) throws ParseException {\n LOG.info(\"+-parsing line '{}'\", line);\n\n String aeName = line.replaceFirst(\"ae: \", \"\").trim();\n if (aeName.endsWith... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_58 | {
"fields": [],
"file": "modules/bluima_utils/src/test/java/ch/epfl/bbp/uima/filter/SentenceFilterAnnotatorTest.java",
"identifier": "SentenceFilterAnnotatorTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void test() throws Exception {\n\n String testDir = \"target/SentenceFilterAnnotatorTest\"\n + currentTimeMillis();\n new File(testDir).mkdir();\n\n JCas jCas = getTestCas(\"I like neurons. I like cells, too. But not cakes.\");\n setDocId(jCas, 1... | {
"fields": [
{
"declarator": "outputDir",
"modifier": "@ConfigurationParameter(name = PARAM_OUTPUT_DIR, defaultValue = \"target/\")\n private",
"original_string": "@ConfigurationParameter(name = PARAM_OUTPUT_DIR, defaultValue = \"target/\")\n private String outputDir;",
"type": "Str... | {
"body": "@Override\n public void process(JCas jCas) throws AnalysisEngineProcessException {\n\n StringBuilder sb = new StringBuilder();\n for (Sentence s : select(jCas, Sentence.class)) {\n if (pattern.matcher(s.getCoveredText()).find()) {\n sb.append(s.getCoveredText().re... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_119 | {
"fields": [],
"file": "utils/blue_commons/src/test/java/ch/epfl/bbp/DateUtilsTest.java",
"identifier": "DateUtilsTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void test() {\n assertEquals(\"0 second\", toHuman(123));\n\n assertEquals(\"5 seconds\", toHuman((5 * ONE_SECOND) + 123));\n\n assertEquals(\"1 day, 1 hour\", toHuman(ONE_DAY + ONE_HOUR));\n\n assertEquals(\"1 day and 2 seconds\", toHuman(ONE_DAY + 2 * ONE_SEC... | {
"fields": [
{
"declarator": "ONE_SECOND = 1000",
"modifier": "public final static",
"original_string": "public final static long ONE_SECOND = 1000;",
"type": "long",
"var_name": "ONE_SECOND"
},
{
"declarator": "SECONDS = 60",
"modifier": "public final static",
... | {
"body": "public static String toHuman(long duration) {\n StringBuffer res = new StringBuffer();\n long temp = 0;\n if (duration >= ONE_SECOND) {\n temp = duration / ONE_DAY;\n if (temp > 0) {\n duration -= temp * ONE_DAY;\n res.append(temp).ap... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_74 | {
"fields": [
{
"declarator": "LOG = LoggerFactory\n .getLogger(Biocreative2GeneCollectionReaderTest.class)",
"modifier": "",
"original_string": "Logger LOG = LoggerFactory\n .getLogger(Biocreative2GeneCollectionReaderTest.class);",
"type": "Logger",
"var_name":... | {
"body": "@Test\n public void testTestCorpus() throws Exception {\n\n CollectionReader cr = CollectionReaderFactory.createReader(\n Biocreative2GeneCollectionReader.class, BlueUima.PARAM_MODE,\n \"test\");\n\n CAS cas = CasCreationUtils\n .createCas(cr.ge... | {
"fields": [
{
"declarator": "LOG = LoggerFactory\n .getLogger(Biocreative2GeneCollectionReader.class)",
"modifier": "",
"original_string": "Logger LOG = LoggerFactory\n .getLogger(Biocreative2GeneCollectionReader.class);",
"type": "Logger",
"var_name": "LOG"
... | {
"body": "public void getNext(JCas jcas) throws IOException, CollectionException {\n\n // P00027739T0000 Serum gamma glutamyltransferase in the diagnosis...\n String article = articleIt.next();\n int firstSpace = article.indexOf(\" \");\n String articleId = article.substring(0, firstSpace... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_23 | {
"fields": [
{
"declarator": "EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>())",
"modifier": "static final",
"original_string": "static final IteratorWithPrevious<String> EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>());",
... | {
"body": "@Test\n public void testParseCorrpted() throws Exception {\n\n for (int i = 1; i < 10; i++) {\n boolean hasEx = false;\n try {\n parse(new File(TEST_PARSE_ROOT + \"corrupted\" + i + \".pipeline\"));\n } catch (ParseException p) {\n ha... | {
"fields": [
{
"declarator": "LOG = getLogger(PipelineScriptParser.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(PipelineScriptParser.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_scripting/src/m... | {
"body": "public static Pipeline parse(File scriptFile) throws ParseException,\n IOException {\n return parse(scriptFile, null);\n }",
"class_method_signature": "PipelineScriptParser.parse(File scriptFile)",
"constructor": false,
"full_signature": "public static Pipeline parse(File scriptF... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_35 | {
"fields": [],
"file": "modules/bluima_commons/src/test/java/ch/epfl/bbp/uima/ae/LanguageDetectionAnnotatorTest.java",
"identifier": "LanguageDetectionAnnotatorTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testStandalone() throws Exception {\n\n assertEquals(\"en\",\n LanguageDetectionAnnotator.detect(UimaTests.TEST_SENTENCE));\n assertEquals(\n \"zh-tw\",\n LanguageDetectionAnnotator\n .detect(\"有一個很大的區別... | {
"fields": [
{
"declarator": "LOG = LoggerFactory\n .getLogger(LanguageDetectionAnnotator.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = LoggerFactory\n .getLogger(LanguageDetectionAnnotator.class);",
"type": "Logger",
"v... | {
"body": "public static String detect(String text) throws LangDetectException {\n\n Detector detector = DetectorFactory.create(0.5);\n detector.append(text);\n\n return detector.detect();\n }",
"class_method_signature": "LanguageDetectionAnnotator.detect(String text)",
"constructor": fals... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_123 | {
"fields": [],
"file": "utils/blue_commons/src/test/java/ch/epfl/bbp/FileParseUtilsTest.java",
"identifier": "FileParseUtilsTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testParseIntDouble() throws Exception {\n String f = FileParseUtilsTest.class.getResource(\n \"FileParseUtilsTest_intdouble.txt\").getFile();\n Map<Integer, Double> i_d = FileParseUtils.parseIntDouble(f, \" \");\n assertEquals(3, i_d.size());\n ... | {
"fields": [],
"file": "utils/blue_commons/src/main/java/ch/epfl/bbp/FileParseUtils.java",
"identifier": "FileParseUtils",
"interfaces": "",
"methods": [
{
"class_method_signature": "FileParseUtils.parseToDoubleList(String txt, String separator)",
"constructor": false,
"full_signature":... | {
"body": "public static Map<Integer, Double> parseIntDouble(String file,\n String separator) throws FileNotFoundException {\n Map<Integer, Double> ret = new HashMap<Integer, Double>();\n for (String line : new LineReader(new FileInputStream(file))) {\n String[] split = line.split(... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_62 | {
"fields": [],
"file": "modules/bluima_utils/src/test/java/ch/epfl/bbp/uima/utils/StructuredDirectoryTest.java",
"identifier": "StructuredDirectoryTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testDecodeFileName2() throws Exception {\n assertEquals(\"\", 12345678,\n StructuredDirectory.decodeFileName(\"12/345/678.txt\"));\n assertEquals(\"\", 12005008,\n StructuredDirectory.decodeFileName(\"12/5/8.txt\"));\n }",
"class_metho... | {
"fields": [],
"file": "modules/bluima_utils/src/main/java/ch/epfl/bbp/uima/utils/StructuredDirectory.java",
"identifier": "StructuredDirectory",
"interfaces": "",
"methods": [
{
"class_method_signature": "StructuredDirectory.getSplit(int docId)",
"constructor": false,
"full_signature":... | {
"body": "public static int decodeFileName(File inputFile) throws IOException {\n try {\n int ret = parseInt(removeExtension(inputFile.getName()));\n ret += 1000 * parseInt(inputFile.getParentFile().getName());\n ret += 1000000 * parseInt(inputFile.getParentFile().getParentFil... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_15 | {
"fields": [
{
"declarator": "EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>())",
"modifier": "static final",
"original_string": "static final IteratorWithPrevious<String> EMPTY_ARGS = new IteratorWithPrevious<String>(\n new ArrayList<String>());",
... | {
"body": "@Test\n public void testNoCOLUMN() throws Exception {\n Pair<List<Object>, String> params = PipelineScriptParser\n .parseParams(new IteratorWithPrevious<String>(newArrayList(\n \" a: bla\", \"bbbbbla\")));\n assertEquals(\n \"only one pa... | {
"fields": [
{
"declarator": "LOG = getLogger(PipelineScriptParser.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(PipelineScriptParser.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_scripting/src/m... | {
"body": "static Pair<List<Object>, String> parseParams(\n IteratorWithPrevious<String> it) throws ParseException {\n List<Object> params = new ArrayList<Object>();\n String xml = \"\";\n while (it.hasNext()) {\n String current = it.next();\n if (StringUtils.isBl... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_42 | {
"fields": [
{
"declarator": "LOG = getLogger(MongoFieldMappingTest.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(MongoFieldMappingTest.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"declarator": "conn",
"mo... | {
"body": "@Test\n public void test() throws Exception {\n\n JCas jCas = UimaTests.getTokenizedTestCas();\n\n DataTable dt = new DataTable(jCas);\n dt.setTableId(12);\n dt.setPageNumber(13);\n\n StringArray sa = new StringArray(jCas, 4);\n sa.copyFromArray(new String[] { \... | {
"fields": [
{
"declarator": "LOG = getLogger(MongoFieldMapping.class)",
"modifier": "protected static final",
"original_string": "protected static final Logger LOG = getLogger(MongoFieldMapping.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"declarator": "ID = \"_... | {
"body": "private static void add(Class<? extends Annotation> class1,\n String shortName, String... fieldMappings) {\n\n checkArgument(fieldMappings.length % 2 == 0,\n \"even nr of field mappings! \" + fieldMappings.length);\n\n for (MongoFieldMapping mfm : ALL_MAPPINGS.values... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_103 | {
"fields": [],
"file": "utils/mallet_utils/src/test/java/cc/mallet/pipe/tsf/transform/CommonNerTokenTransformersTest.java",
"identifier": "CommonNerTokenTransformersTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n\tpublic void testLowerCaseTransformer() {\n\t\tTokenTransformer transformer = CommonNerTokenTransformers.getLowerCaseTransformer();\n\t\t\n\t\tassertEquals(\"\", transformer.transform(\"\"));\n\t\tassertEquals(\"miau\", transformer.transform(\"miau\"));\n\t\tassertEquals(\"miau\", transformer.trans... | {
"fields": [
{
"declarator": "ToLowerCaseTransformer = new TokenTransformer() {\t\t\n\t\t@Override\n\t\tpublic String transform(String token) {\n\t\t\treturn token.toLowerCase();\t\t\t\n\t\t}\n\t}",
"modifier": "private static final",
"original_string": "private static final TokenTransformer To... | {
"body": "public static TokenTransformer getLowerCaseTransformer() {\n\t\treturn ToLowerCaseTransformer;\n\t}",
"class_method_signature": "CommonNerTokenTransformers.getLowerCaseTransformer()",
"constructor": false,
"full_signature": "public static TokenTransformer getLowerCaseTransformer()",
"identifier": "... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_54 | {
"fields": [],
"file": "modules/bluima_utils/src/test/java/ch/epfl/bbp/uima/filter/MeasureNormalizerAnnotatorTest.java",
"identifier": "MeasureNormalizerAnnotatorTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n // Checks a Measure object normalized text is changed to MEASURE_\n public void testMeasuresIsCorrectlyParsed() throws Exception {\n JCas jCas = getTestCas(\"20%\");\n\n Measure m = createAnnot(jCas, Measure.class, 0, 2);\n m.setUnit(\"%\");\n m.setValue(20f);\n ... | {
"fields": [
{
"declarator": "MEASURE_MASK = \"MEASURE___\"",
"modifier": "public static final",
"original_string": "public static final String MEASURE_MASK = \"MEASURE___\";",
"type": "String",
"var_name": "MEASURE_MASK"
},
{
"declarator": "MEASURE_DATE = \"Date\"",
... | {
"body": "@Override\n public void process(JCas jCas) throws AnalysisEngineProcessException {\n\n // An array is needed because when a Keep is removed, the collection\n // fails\n Keep[] keeps = select(jCas, Keep.class).toArray(new Keep[0]);\n\n for (int i = 0; i < keeps.length; i++) {\... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_115 | {
"fields": [],
"file": "utils/blue_commons/src/test/java/ch/epfl/bbp/triechar/VocabularyTest.java",
"identifier": "VocabularyTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testHello() {\n Vocabulary v = new Vocabulary(true);\n int hello = v.addWord(\"hello\");\n assertEquals(0, hello);\n assertEquals(\"hello\", v.getWord(hello));\n assertEquals(1, v.getSize());\n }",
"class_method_signature": "VocabularyTest.test... | {
"fields": [
{
"declarator": "serialVersionUID = 1L",
"modifier": "private static final",
"original_string": "private static final long serialVersionUID = 1L;",
"type": "long",
"var_name": "serialVersionUID"
},
{
"declarator": "nodes",
"modifier": "",
"orig... | {
"body": "public String getWord(int id) {\n if (nodes == null)\n updateBacktracking();\n TrieNodeData<Integer> node = nodes[id];\n\n StringBuilder sb = new StringBuilder();\n node.getWord(sb);\n\n return sb.toString();\n }",
"class_method_signature": "Vocabulary.get... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_97 | {
"fields": [],
"file": "modules/bluima_pubmed_ws/src/test/java/ch/epfl/bbp/uima/pubmed/PubmedSearchTest.java",
"identifier": "PubmedSearchTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testNeuron2() throws Exception {\n List<PubmedArticleType> articles = Lists\n .newArrayList(new PubmedSearch().search(\"mouse\", 90));\n assertEquals(90, articles.size());\n }",
"class_method_signature": "PubmedSearchTest.testNeuron2()",
"construct... | {
"fields": [
{
"declarator": "LOG = LoggerFactory.getLogger(PubmedSearch.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = LoggerFactory.getLogger(PubmedSearch.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"declarator": "servic... | {
"body": "public Iterator<PubmedArticleType> search(String query)\n\t\t\tthrows RemoteException {\n\t\treturn search(query, Integer.MAX_VALUE);\n\t}",
"class_method_signature": "PubmedSearch.search(String query)",
"constructor": false,
"full_signature": "public Iterator<PubmedArticleType> search(String query)"... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_78 | {
"fields": [],
"file": "modules/bluima_units/src/test/java/ch/epfl/bbp/uima/units/normalizers/WrittenNumbersNormalizerTest.java",
"identifier": "WrittenNumbersNormalizerTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void test() {\n assertEquals(new Long(1), text2num(\"one\"));\n assertEquals(new Long(12), text2num(\"twelve\"));\n assertEquals(new Long(72), text2num(\"seventy two\"));\n assertEquals(new Long(72), text2num(\"seventy-two\"));\n\n assertEquals(new Long(... | {
"fields": [
{
"declarator": "small = new HashMap<String, Integer>()",
"modifier": "static",
"original_string": "static Map<String, Integer> small = new HashMap<String, Integer>();",
"type": "Map<String, Integer>",
"var_name": "small"
},
{
"declarator": "magnitude = ne... | {
"body": "public static Long text2num(String s) {\n\n\t\tString[] a = s.split(\"\\\\s|-\");\n\t\tif (a.length == 0)\n\t\t\tthrow new NumberFormatException(\"cannot parse \" + s);\n\n\t\tlong n = 0l, g = 0l;\n\t\tfor (String w : a) {\n\t\t\tif (small.containsKey(w)) {\n\t\t\t\tg += small.get(w);\n\t\t\t} else if (w.e... | {
"created": null,
"fork": null,
"fork_count": 11,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
"stargazer_count": 21,
"stars": null,
"updates": null,
"url": "https://github.com/BlueBrain/bluima"
} |
23831132_39 | {
"fields": [],
"file": "modules/bluima_commons/src/test/java/ch/epfl/bbp/uima/ae/LinnaeusAnnotatorTest.java",
"identifier": "LinnaeusAnnotatorTest",
"interfaces": "",
"superclass": "extends TestWithBluimaResource"
} | {
"body": "@Test\n public void test2() throws Exception {\n // FIXME rodent not found\n // JCas jCas = getTestCas(\"bla bla rodent bla bla\");\n JCas jCas = getTestCas(\"bla bla rat bla bla\");\n\n createLinnaeusEngine().process(jCas);\n\n Collection<LinnaeusSpecies> sps = select... | {
"fields": [
{
"declarator": "matcher",
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"type": "Matcher",
"var_name": "matcher"
},
{
"declarator": "logger = Logger.getLogger(Logger.GLOBAL_LOGGER_NAME)",
"modifier": "private",
"origina... | {
"body": "@Override\n public void process(JCas cas) throws AnalysisEngineProcessException {\n\n String text = cas.getDocumentText();\n List<Mention> mentions = matcher.match(text);\n for (Mention mention : mentions) {\n\n String mostProbableID = mention.getMostProbableID();\n ... | {
"created": null,
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"language": "Java",
"license": "licensed",
"repo_id": 23831132,
"size": 220469,
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"stars": null,
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"url": "https://github.com/BlueBrain/bluima"
} |
23831132_81 | {
"fields": [
{
"declarator": "LOG = getLogger(LexicaHelperTest.class)",
"modifier": "private static",
"original_string": "private static Logger LOG = getLogger(LexicaHelperTest.class);",
"type": "Logger",
"var_name": "LOG"
}
],
"file": "modules/bluima_lexica/src/test/java/ch... | {
"body": "@Test\n public void testAll() throws Exception {\n\n FilenameFilter filter = new FilenameFilter() {\n @Override\n public boolean accept(File arg0, String name) {\n if (newArrayList(\".svn\", \"templates\", \".DS_Store\", \"biolexicon\").contains(\n ... | {
"fields": [
{
"declarator": "LEXICA_ROOT = BlueUima.BLUE_UIMA_ROOT\n + \"modules/bluima_lexica/\"",
"modifier": "public final static",
"original_string": "public final static String LEXICA_ROOT = BlueUima.BLUE_UIMA_ROOT\n + \"modules/bluima_lexica/\";",
"type": "Str... | {
"body": "@SuppressWarnings(\"unchecked\")\n public static AnalysisEngineDescription getConceptMapper(String path,\n String[] args) throws UIMAException, IOException, SAXException {\n\n String conceptMapper = LEXICA_ROOT + \"desc/\" + path\n + \"ConceptMapper.xml\";\n if (!... | {
"created": null,
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"repo_id": 23831132,
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"url": "https://github.com/BlueBrain/bluima"
} |
15611804_0 | {
"fields": [
{
"declarator": "preferences",
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"type": "Preferences",
"var_name": "preferences"
},
{
"declarator": "dataStoreFlorent",
"modifier": "private",
"original_string": "priv... | {
"body": "@Test\n public void testGet() throws Exception {\n init();\n\n Credentials credentialsFlorent = dataStoreFlorent.getCredentials(\"dummy\");\n assertNotNull(credentialsFlorent);\n assertEquals(credentialsFlorent.username(), \"florent\");\n assertEquals(credentialsFloren... | {
"fields": [
{
"declarator": "preferences",
"modifier": "private",
"original_string": "private Preferences preferences;",
"type": "Preferences",
"var_name": "preferences"
},
{
"declarator": "credentialsHelper",
"modifier": "private",
"original_string": "pri... | {
"body": "@Override\n public Credentials get(String key) {\n return credentialsHelper.convert(getRemoteCredentials());\n }",
"class_method_signature": "PreferencesDataStore.get(String key)",
"constructor": false,
"full_signature": "@Override public Credentials get(String key)",
"identifier": "ge... | {
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"repo_id": 15611804,
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"url": "https://github.com/codenvy-legacy/cli"
} |
15611804_1 | {
"fields": [
{
"declarator": "preferences",
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"type": "Preferences",
"var_name": "preferences"
},
{
"declarator": "dataStoreFlorent",
"modifier": "private",
"original_string": "priv... | {
"body": "@Test(dependsOnMethods = \"testGet\")\n public void testPut() throws Exception {\n init();\n Credentials credentialsFlorent = dataStoreFlorent.getCredentials(\"dummy\");\n\n // change username\n Credentials update = Mockito.mock(Credentials.class);\n doReturn(\"toto\")... | {
"fields": [
{
"declarator": "preferences",
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"original_string": "private Preferences preferences;",
"type": "Preferences",
"var_name": "preferences"
},
{
"declarator": "credentialsHelper",
"modifier": "private",
"original_string": "pri... | {
"body": "@Override\n public synchronized Credentials put(String key, Credentials credentials) {\n this.preferences.put(remote, credentialsHelper.convert(credentials));\n return get(key);\n }",
"class_method_signature": "PreferencesDataStore.put(String key, Credentials credentials)",
"constru... | {
"created": null,
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"url": "https://github.com/codenvy-legacy/cli"
} |
15611804_6 | {
"fields": [
{
"declarator": "USELESS_POJO_KEY = \"uselessPojo\"",
"modifier": "private static final",
"original_string": "private static final String USELESS_POJO_KEY = \"uselessPojo\";",
"type": "String",
"var_name": "USELESS_POJO_KEY"
}
],
"file": "preferences/impl/src/te... | {
"body": "@Test\n public void testLessPropertiesThanPojoPreferences() throws IOException {\n FilePreferences filePreferences = getPreferencesFile(\"lessPropertiesThanPojoPreferences.json\");\n FakePojo fakePojo = filePreferences.get(USELESS_POJO_KEY, FakePojo.class);\n assertThat(FakePojo.get... | {
"fields": [
{
"declarator": "rootNode",
"modifier": "private",
"original_string": "private JsonPreferences rootNode;",
"type": "JsonPreferences",
"var_name": "rootNode"
},
{
"declarator": "mapper",
"modifier": "private final",
"original_string": "privat... | {
"body": "@Override\n public <T> T get(String key, Class<T> clazz) {\n return rootNode.get(key, clazz);\n }",
"class_method_signature": "FilePreferences.get(String key, Class<T> clazz)",
"constructor": false,
"full_signature": "@Override public T get(String key, Class<T> clazz)",
"identifier": "... | {
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"stars": null,
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"url": "https://github.com/codenvy-legacy/cli"
} |
15611804_4 | {
"fields": [
{
"declarator": "USELESS_POJO_KEY = \"uselessPojo\"",
"modifier": "private static final",
"original_string": "private static final String USELESS_POJO_KEY = \"uselessPojo\";",
"type": "String",
"var_name": "USELESS_POJO_KEY"
}
],
"file": "preferences/impl/src/te... | {
"body": "@Test\n public void testMorePropertiesThanPojoPreferences() throws IOException {\n FilePreferences filePreferences = getPreferencesFile(\"morePropertiesThanPojoPreferences.json\");\n\n FakePojo fakePojo = filePreferences.get(USELESS_POJO_KEY, FakePojo.class);\n\n assertThat(FakePojo... | {
"fields": [
{
"declarator": "rootNode",
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"type": "JsonPreferences",
"var_name": "rootNode"
},
{
"declarator": "mapper",
"modifier": "private final",
"original_string": "privat... | {
"body": "@Override\n public <T> T get(String key, Class<T> clazz) {\n return rootNode.get(key, clazz);\n }",
"class_method_signature": "FilePreferences.get(String key, Class<T> clazz)",
"constructor": false,
"full_signature": "@Override public T get(String key, Class<T> clazz)",
"identifier": "... | {
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} |
15611804_5 | {
"fields": [
{
"declarator": "USELESS_POJO_KEY = \"uselessPojo\"",
"modifier": "private static final",
"original_string": "private static final String USELESS_POJO_KEY = \"uselessPojo\";",
"type": "String",
"var_name": "USELESS_POJO_KEY"
}
],
"file": "preferences/impl/src/te... | {
"body": "@Test\n public void testTwoConsumersWithDifferentsPojo() throws IOException {\n FilePreferences filePreferences = getPreferencesFile(\"morePropertiesThanPojoPreferences.json\");\n\n FakePojo fakePojo = filePreferences.get(USELESS_POJO_KEY, FakePojo.class);\n\n assertThat(FakePojo.ge... | {
"fields": [
{
"declarator": "rootNode",
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"type": "JsonPreferences",
"var_name": "rootNode"
},
{
"declarator": "mapper",
"modifier": "private final",
"original_string": "privat... | {
"body": "@Override\n public <T> T get(String key, Class<T> clazz) {\n return rootNode.get(key, clazz);\n }",
"class_method_signature": "FilePreferences.get(String key, Class<T> clazz)",
"constructor": false,
"full_signature": "@Override public T get(String key, Class<T> clazz)",
"identifier": "... | {
"created": null,
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"size": 1073,
"stargazer_count": 11,
"stars": null,
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"url": "https://github.com/codenvy-legacy/cli"
} |
15611804_2 | {
"fields": [
{
"declarator": "preferences",
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"type": "Preferences",
"var_name": "preferences"
},
{
"declarator": "dataStoreFlorent",
"modifier": "private",
"original_string": "priv... | {
"body": "@Test(dependsOnMethods = \"testPut\")\n public void testOnlyOneInstanceGet() throws Exception {\n init();\n\n Credentials one = dataStoreFlorent.get(\"one\");\n assertNotNull(one);\n Credentials two = dataStoreFlorent.get(\"two\");\n assertNotNull(two);\n\n asse... | {
"fields": [
{
"declarator": "preferences",
"modifier": "private",
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"type": "Preferences",
"var_name": "preferences"
},
{
"declarator": "credentialsHelper",
"modifier": "private",
"original_string": "pri... | {
"body": "@Override\n public Credentials get(String key) {\n return credentialsHelper.convert(getRemoteCredentials());\n }",
"class_method_signature": "PreferencesDataStore.get(String key)",
"constructor": false,
"full_signature": "@Override public Credentials get(String key)",
"identifier": "ge... | {
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} |
15611804_3 | {
"fields": [
{
"declarator": "USELESS_POJO_KEY = \"uselessPojo\"",
"modifier": "private static final",
"original_string": "private static final String USELESS_POJO_KEY = \"uselessPojo\";",
"type": "String",
"var_name": "USELESS_POJO_KEY"
}
],
"file": "preferences/impl/src/te... | {
"body": "@Test\n public void testPerfectPojoMatchPreferences() throws IOException {\n FilePreferences filePreferences = getPreferencesFile(\"perfectPojoMatchPreferences.json\");\n\n FakePojo fakePojo = filePreferences.get(USELESS_POJO_KEY, FakePojo.class);\n\n assertThat(FakePojo.getDumbInst... | {
"fields": [
{
"declarator": "rootNode",
"modifier": "private",
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"type": "JsonPreferences",
"var_name": "rootNode"
},
{
"declarator": "mapper",
"modifier": "private final",
"original_string": "privat... | {
"body": "@Override\n public <T> T get(String key, Class<T> clazz) {\n return rootNode.get(key, clazz);\n }",
"class_method_signature": "FilePreferences.get(String key, Class<T> clazz)",
"constructor": false,
"full_signature": "@Override public T get(String key, Class<T> clazz)",
"identifier": "... | {
"created": null,
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"is_fork": false,
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"url": "https://github.com/codenvy-legacy/cli"
} |
111854037_476 | {
"fields": [
{
"declarator": "CHANNEL_COUNT_MONO = 1",
"modifier": "private static final",
"original_string": "private static final int CHANNEL_COUNT_MONO = 1;",
"type": "int",
"var_name": "CHANNEL_COUNT_MONO"
},
{
"declarator": "CHANNEL_COUNT_STEREO = 2",
"modif... | {
"body": "@Config(minSdk = 21, maxSdk = TARGET_SDK)\n @Test\n public void supportsFloatOutputFromApi21() {\n assertThat(defaultAudioSink.supportsOutput(CHANNEL_COUNT_STEREO, C.ENCODING_PCM_FLOAT))\n .isTrue();\n }",
"class_method_signature": "DefaultAudioSinkTest.supportsFloatOutputFromApi21()",
"co... | {
"fields": [
{
"declarator": "MIN_BUFFER_DURATION_US = 250000",
"modifier": "private static final",
"original_string": "private static final long MIN_BUFFER_DURATION_US = 250000;",
"type": "long",
"var_name": "MIN_BUFFER_DURATION_US"
},
{
"declarator": "MAX_BUFFER_DURA... | {
"body": "@Override\n public boolean supportsOutput(int channelCount, @C.Encoding int encoding) {\n if (Util.isEncodingLinearPcm(encoding)) {\n // AudioTrack supports 16-bit integer PCM output in all platform API versions, and float\n // output from platform API version 21 only. Other integer PCM encod... | {
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"repo_id": 111854037,
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"stars": null,
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"url": "https://github.com/PaulWoitaschek/ExoPlayer-Extensions"
} |
111854037_231 | {
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"file": "library/core/src/test/java/com/google/android/exoplayer2/util/MimeTypesTest.java",
"identifier": "MimeTypesTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testGetMediaMimeType_fromValidCodecs_returnsCorrectMimeType() {\n assertThat(MimeTypes.getMediaMimeType(\"avc1\")).isEqualTo(MimeTypes.VIDEO_H264);\n assertThat(MimeTypes.getMediaMimeType(\"avc1.42E01E\")).isEqualTo(MimeTypes.VIDEO_H264);\n assertThat(MimeTypes.getMediaMimeTyp... | {
"fields": [
{
"declarator": "BASE_TYPE_VIDEO = \"video\"",
"modifier": "public static final",
"original_string": "public static final String BASE_TYPE_VIDEO = \"video\";",
"type": "String",
"var_name": "BASE_TYPE_VIDEO"
},
{
"declarator": "BASE_TYPE_AUDIO = \"audio\""... | {
"body": "public static @Nullable String getMediaMimeType(@Nullable String codec) {\n if (codec == null) {\n return null;\n }\n codec = Util.toLowerInvariant(codec.trim());\n if (codec.startsWith(\"avc1\") || codec.startsWith(\"avc3\")) {\n return MimeTypes.VIDEO_H264;\n } else if (codec.sta... | {
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"language": "Java",
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"size": 94663,
"stargazer_count": 9,
"stars": null,
"updates": null,
"url": "https://github.com/PaulWoitaschek/ExoPlayer-Extensions"
} |
111854037_475 | {
"fields": [
{
"declarator": "CHANNEL_COUNT_MONO = 1",
"modifier": "private static final",
"original_string": "private static final int CHANNEL_COUNT_MONO = 1;",
"type": "int",
"var_name": "CHANNEL_COUNT_MONO"
},
{
"declarator": "CHANNEL_COUNT_STEREO = 2",
"modif... | {
"body": "@Config(minSdk = OLDEST_SDK, maxSdk = 20)\n @Test\n public void doesNotSupportFloatOutputBeforeApi21() {\n assertThat(defaultAudioSink.supportsOutput(CHANNEL_COUNT_STEREO, C.ENCODING_PCM_FLOAT))\n .isFalse();\n }",
"class_method_signature": "DefaultAudioSinkTest.doesNotSupportFloatOutputBefo... | {
"fields": [
{
"declarator": "MIN_BUFFER_DURATION_US = 250000",
"modifier": "private static final",
"original_string": "private static final long MIN_BUFFER_DURATION_US = 250000;",
"type": "long",
"var_name": "MIN_BUFFER_DURATION_US"
},
{
"declarator": "MAX_BUFFER_DURA... | {
"body": "@Override\n public boolean supportsOutput(int channelCount, @C.Encoding int encoding) {\n if (Util.isEncodingLinearPcm(encoding)) {\n // AudioTrack supports 16-bit integer PCM output in all platform API versions, and float\n // output from platform API version 21 only. Other integer PCM encod... | {
"created": null,
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"is_fork": false,
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"repo_id": 111854037,
"size": 94663,
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"stars": null,
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"url": "https://github.com/PaulWoitaschek/ExoPlayer-Extensions"
} |
111854037_232 | {
"fields": [],
"file": "library/core/src/test/java/com/google/android/exoplayer2/util/MimeTypesTest.java",
"identifier": "MimeTypesTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testGetMimeTypeFromMp4ObjectType_forValidObjectType_returnsCorrectMimeType() {\n assertThat(MimeTypes.getMimeTypeFromMp4ObjectType(0x60)).isEqualTo(MimeTypes.VIDEO_MPEG2);\n assertThat(MimeTypes.getMimeTypeFromMp4ObjectType(0x61)).isEqualTo(MimeTypes.VIDEO_MPEG2);\n assertThat... | {
"fields": [
{
"declarator": "BASE_TYPE_VIDEO = \"video\"",
"modifier": "public static final",
"original_string": "public static final String BASE_TYPE_VIDEO = \"video\";",
"type": "String",
"var_name": "BASE_TYPE_VIDEO"
},
{
"declarator": "BASE_TYPE_AUDIO = \"audio\""... | {
"body": "@Nullable\n public static String getMimeTypeFromMp4ObjectType(int objectType) {\n switch (objectType) {\n case 0x20:\n return MimeTypes.VIDEO_MP4V;\n case 0x21:\n return MimeTypes.VIDEO_H264;\n case 0x23:\n return MimeTypes.VIDEO_H265;\n case 0x60:\n case 0... | {
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"repo_id": 111854037,
"size": 94663,
"stargazer_count": 9,
"stars": null,
"updates": null,
"url": "https://github.com/PaulWoitaschek/ExoPlayer-Extensions"
} |
111854037_233 | {
"fields": [],
"file": "library/core/src/test/java/com/google/android/exoplayer2/util/MimeTypesTest.java",
"identifier": "MimeTypesTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testGetMimeTypeFromMp4ObjectType_forInvalidObjectType_returnsNull() {\n assertThat(MimeTypes.getMimeTypeFromMp4ObjectType(0)).isNull();\n assertThat(MimeTypes.getMimeTypeFromMp4ObjectType(0x600)).isNull();\n assertThat(MimeTypes.getMimeTypeFromMp4ObjectType(0x01)).isNull();\n ... | {
"fields": [
{
"declarator": "BASE_TYPE_VIDEO = \"video\"",
"modifier": "public static final",
"original_string": "public static final String BASE_TYPE_VIDEO = \"video\";",
"type": "String",
"var_name": "BASE_TYPE_VIDEO"
},
{
"declarator": "BASE_TYPE_AUDIO = \"audio\""... | {
"body": "@Nullable\n public static String getMimeTypeFromMp4ObjectType(int objectType) {\n switch (objectType) {\n case 0x20:\n return MimeTypes.VIDEO_MP4V;\n case 0x21:\n return MimeTypes.VIDEO_H264;\n case 0x23:\n return MimeTypes.VIDEO_H265;\n case 0x60:\n case 0... | {
"created": null,
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"is_fork": false,
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"repo_id": 111854037,
"size": 94663,
"stargazer_count": 9,
"stars": null,
"updates": null,
"url": "https://github.com/PaulWoitaschek/ExoPlayer-Extensions"
} |
111854037_474 | {
"fields": [
{
"declarator": "CHANNEL_COUNT_MONO = 1",
"modifier": "private static final",
"original_string": "private static final int CHANNEL_COUNT_MONO = 1;",
"type": "int",
"var_name": "CHANNEL_COUNT_MONO"
},
{
"declarator": "CHANNEL_COUNT_STEREO = 2",
"modif... | {
"body": "@Test\n public void trimsStartAndEndFrames() throws Exception {\n configureDefaultAudioSink(\n CHANNEL_COUNT_STEREO,\n /* trimStartFrames= */ TRIM_100_MS_FRAME_COUNT,\n /* trimEndFrames= */ TRIM_10_MS_FRAME_COUNT);\n defaultAudioSink.handleBuffer(createDefaultSilenceBuffer(), /*... | {
"fields": [
{
"declarator": "MIN_BUFFER_DURATION_US = 250000",
"modifier": "private static final",
"original_string": "private static final long MIN_BUFFER_DURATION_US = 250000;",
"type": "long",
"var_name": "MIN_BUFFER_DURATION_US"
},
{
"declarator": "MAX_BUFFER_DURA... | {
"body": "@Override\n @SuppressWarnings(\"ReferenceEquality\")\n public boolean handleBuffer(ByteBuffer buffer, long presentationTimeUs)\n throws InitializationException, WriteException {\n Assertions.checkArgument(inputBuffer == null || buffer == inputBuffer);\n\n if (pendingConfiguration != null) {\n ... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
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"repo_id": 111854037,
"size": 94663,
"stargazer_count": 9,
"stars": null,
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"url": "https://github.com/PaulWoitaschek/ExoPlayer-Extensions"
} |
111854037_473 | {
"fields": [
{
"declarator": "CHANNEL_COUNT_MONO = 1",
"modifier": "private static final",
"original_string": "private static final int CHANNEL_COUNT_MONO = 1;",
"type": "int",
"var_name": "CHANNEL_COUNT_MONO"
},
{
"declarator": "CHANNEL_COUNT_STEREO = 2",
"modif... | {
"body": "@Test\n public void trimsEndFrames() throws Exception {\n configureDefaultAudioSink(\n CHANNEL_COUNT_STEREO,\n /* trimStartFrames= */ 0,\n /* trimEndFrames= */ TRIM_10_MS_FRAME_COUNT);\n defaultAudioSink.handleBuffer(createDefaultSilenceBuffer(), /* presentationTimeUs= */ 0);\n\... | {
"fields": [
{
"declarator": "MIN_BUFFER_DURATION_US = 250000",
"modifier": "private static final",
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"type": "long",
"var_name": "MIN_BUFFER_DURATION_US"
},
{
"declarator": "MAX_BUFFER_DURA... | {
"body": "@Override\n @SuppressWarnings(\"ReferenceEquality\")\n public boolean handleBuffer(ByteBuffer buffer, long presentationTimeUs)\n throws InitializationException, WriteException {\n Assertions.checkArgument(inputBuffer == null || buffer == inputBuffer);\n\n if (pendingConfiguration != null) {\n ... | {
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"url": "https://github.com/PaulWoitaschek/ExoPlayer-Extensions"
} |
111854037_472 | {
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{
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"type": "int",
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},
{
"declarator": "CHANNEL_COUNT_STEREO = 2",
"modif... | {
"body": "@Test\n public void trimsStartFrames() throws Exception {\n configureDefaultAudioSink(\n CHANNEL_COUNT_STEREO,\n /* trimStartFrames= */ TRIM_100_MS_FRAME_COUNT,\n /* trimEndFrames= */ 0);\n defaultAudioSink.handleBuffer(createDefaultSilenceBuffer(), /* presentationTimeUs= */ 0);... | {
"fields": [
{
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"type": "long",
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},
{
"declarator": "MAX_BUFFER_DURA... | {
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3149437_0 | {
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},
{
"declarator": "ticketValidator",
"modifier":... | {
"body": "@Test(expected=UsernameNotFoundException.class)\n public void testUsernameNotFound() throws Exception {\n // stubbing\n when(ticketValidator.validateTicket(TEST_TOKEN)).thenReturn(TICKET_VALIDATION);\n when(userDetailsService.loadUserByUsername(TEST_USER)).thenThrow(new UsernameNotF... | {
"fields": [
{
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"url": "https://github.com/spring-projects/spring-security-kerberos"
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3149437_1 | {
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{
"declarator": "ticketValidator",
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"body": "@Test(expected=BadCredentialsException.class)\n public void testTicketValidationWrong() throws Exception {\n // stubbing\n when(ticketValidator.validateTicket(TEST_TOKEN)).thenThrow(new BadCredentialsException(\"\"));\n\n // testing\n provider.authenticate(INPUT_TOKEN);\n ... | {
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3149437_2 | {
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... | {
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47405371_5 | {
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47405371_4 | {
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47405371_8 | {
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47405371_3 | {
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"declarator": "ev... | {
"body": "private void log(Event event) {\n if (logger == null) return;\n\n @SuppressWarnings(\"StringBufferReplaceableByString\")\n StringBuilder builder = new StringBuilder()\n .append(event.name)\n .append(\"-> \")\n .append(event.attributes.toString())\n .append(\", super att... | {
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47405371_2 | {
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47405371_1 | {
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47405371_0 | {
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47405371_7 | {
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47405371_6 | {
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12544638_1 | {
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{
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"class_method_... | {
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... | {
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"url": "https://github.com/threerings/getdown"
} |
12544638_17 | {
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}
],
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} |
12544638_21 | {
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"file": "core/src/test/java/com/threerings/getdown/util/ColorTest.java",
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} | {
"body": "@Test\n public void testBrightness() {\n assertEquals(0, Color.brightness(0xFF000000), 0.0000001);\n assertEquals(1, Color.brightness(0xFFFFFFFF), 0.0000001);\n assertEquals(0.0117647, Color.brightness(0xFF010203), 0.0000001);\n assertEquals(1, Color.brightness(0xFF00FFC8), 0... | {
"fields": [
{
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},
{
"declarator": "WHITE = 0xFFFFFFFF",
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... | {
"body": "public static float brightness (int argb) {\n // TODO: we're ignoring alpha here...\n int red = (argb >> 16) & 0xFF;\n int green = (argb >> 8) & 0xFF;\n int blue = (argb >> 0) & 0xFF;\n int max = Math.max(Math.max(red, green), blue);\n return ((float) max) / 255.0f... | {
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12544638_20 | {
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} | {
"body": "@Test public void testCouldBeValidUrl ()\n {\n assertTrue(couldBeValidUrl(\"http://www.foo.com/\"));\n assertTrue(couldBeValidUrl(\"http://www.foo.com/A-B-C/1_2_3/~bar/q.jsp?x=u+i&y=2;3;4#baz%20baz\"));\n assertTrue(couldBeValidUrl(\"https://user:secret@www.foo.com/\"));\n\n ... | {
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{
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],
"file": "core/src/main/java/com/threerings/getdown/... | {
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"class_method_signature": "StringUtil.couldBeValidUrl(String url)",
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12544638_0 | {
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{
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"class_method_signature": "ClassPathTest.shouldCreateValidArgumentString()... | {
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... | {
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12544638_16 | {
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"superclass": ""
} | {
"body": "@Test\n public void shouldParseJavaRuntimeVersion ()\n {\n long version = VersionUtil.parseJavaVersion(\n \"(\\\\d+)\\\\.(\\\\d+)\\\\.(\\\\d+)(_\\\\d+)?(-b\\\\d+)?\", \"1.8.0_131-b11\");\n assertEquals(108_013_111, version);\n }",
"class_method_signature": "VersionUtilTe... | {
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12544638_7 | {
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{
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12544638_11 | {
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"superclass": ""
} | {
"body": "@Test\n public void testVerify () throws MalformedURLException\n {\n checkCanVerify(\"foo.com\", \"http://foo.com\", true);\n checkCanVerify(\"foo.com\", \"http://foo.com/\", true);\n checkCanVerify(\"foo.com\", \"http://foo.com/x/y/z\", true);\n checkCanVerify(\"foo.com\"... | {
"fields": [],
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{
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12544638_6 | {
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{
"declarator": "_firstJar",
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{
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12544638_10 | {
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{
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"modifier": "private static final",
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"body": "@Test public void testAppbaseOverride () {\n System.setProperty(\"appbase_override\", \"https://barbaz.com/newapp\");\n for (String appbase : APPBASES) {\n assertEquals(\"https://barbaz.com/newapp\", SysProps.overrideAppbase(appbase));\n }\n }",
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12544638_26 | {
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{
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... | {
"body": "@Test public void shouldRememberWhenFileWasRequested () throws Exception\n {\n File cachedFile = cacheFile();\n String name = cachedFile.getName() + ResourceCache.LAST_ACCESSED_FILE_SUFFIX;\n File lastAccessedFile = new File(cachedFile.getParentFile(), name);\n lastAccessedFi... | {
"fields": [
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{
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... | {
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12544638_9 | {
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"modifier": "private static final",
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"body": "@Test public void testAppbaseDomain () {\n System.setProperty(\"appbase_domain\", \"https://barbaz.com\");\n for (String appbase : APPBASES) {\n assertEquals(\"https://barbaz.com/myapp\", SysProps.overrideAppbase(appbase));\n }\n System.setProperty(\"appbase_domain\",... | {
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"body": "public static String appbaseDomain () {\n return System.getProperty(\"appbase_domain\");\n }",
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12544638_25 | {
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... | {
"body": "@Test public void shouldNotCacheTheSameFile () throws Exception\n {\n File cachedFile = cacheFile();\n cachedFile.setLastModified(YESTERDAY);\n long expectedLastModified = cachedFile.lastModified();\n // caching it another time\n File sameCachedFile = cacheFile();\n ... | {
"fields": [
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... | {
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12544638_13 | {
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"body": "@Test\n public void shouldParseJavaVersion8 ()\n {\n long version = VersionUtil.parseJavaVersion(\n \"(\\\\d+)(?:\\\\.(\\\\d+)(?:\\\\.(\\\\d+)(_\\\\d+)?)?)?\", \"1.8\");\n assertEquals(1_080_000, version);\n }",
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12544638_5 | {
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... | {
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12544638_12 | {
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} | {
"body": "@Test\n public void shouldParseJavaVersion ()\n {\n long version = VersionUtil.parseJavaVersion(\n \"(\\\\d+)(?:\\\\.(\\\\d+)(?:\\\\.(\\\\d+)(_\\\\d+)?)?)?\", \"1.8.0_152\");\n assertEquals(1_080_152, version);\n }",
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12544638_4 | {
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12544638_24 | {
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12544638_8 | {
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"modifier": "private static final",
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"body": "@Test public void testStartDelay () {\n\n assertEquals(0, SysProps.startDelay());\n\n System.setProperty(\"delay\", \"x\");\n assertEquals(0, SysProps.startDelay());\n\n System.setProperty(\"delay\", \"-7\");\n assertEquals(0, SysProps.startDelay());\n\n System.set... | {
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{
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... | {
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12544638_15 | {
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} | {
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"class_method_signature": "VersionUtilTest.shouldParseJava... | {
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12544638_3 | {
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12544638_19 | {
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12544638_23 | {
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... | {
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12544638_22 | {
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"declarator": "_folder = new TemporaryFolder()",
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... | {
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12544638_18 | {
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12544638_14 | {
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12544638_2 | {
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3040093_9 | {
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"body": "@Test\n public void CDATA() {\n assertEquals(\"<b>and<![CDATA[ <xml>&& fisk]]> <br/>wonk</b>\", StringChopper.chop(\"<b>and<![CDATA[ <xml>&& fisk]]> <br/>wonk\", -1, true));\n }",
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3040093_5 | {
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} | {
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"class_method_signature": "StringChopperTest.Simple()",
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3040093_17 | {
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3040093_16 | {
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3040093_4 | {
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"body": "@Test\n public void SimpleEmpty() {\n assertEquals(null, StringChopper.chop(null, -1, false));\n assertEquals(\"\", StringChopper.chop(\"\", -1, false));\n assertEquals(\"\", StringChopper.chop(\"\", 0, false));\n assertEquals(\"\", StringChopper.chop(\"\", 1, false));\n ... | {
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3040093_8 | {
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} | {
"body": "@Test\n public void Unbalanced() {\n assertEquals(\"<b>and</b>\", StringChopper.chop(\"<b>and\", -1, true));\n assertEquals(\"fisk<b>and</b>\", StringChopper.chop(\"fisk<b>and\", -1, true));\n }",
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3040093_3 | {
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3040093_11 | {
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"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void CDATAChopWholeWord() {\n assertEquals(\"<b>and<![CDATA[ <xml>&& ...]]></b>\", StringChopper.chop(\"<b>and<![CDATA[ <xml>&& fisk]]> <br/>wonk\", 14, false));\n }",
"class_method_signature": "StringChopperTest.CDATAChopWholeWord()",
"constructor": false,
"full_signature... | {
"fields": [],
"file": "result-spi/src/main/java/no/sesat/search/result/StringChopper.java",
"identifier": "StringChopper",
"interfaces": "",
"methods": [
{
"class_method_signature": "StringChopper.chop(final String input, final int length)",
"constructor": false,
"full_signature": "pub... | {
"body": "public static String chop(final String input, final int length) {\n return chop(input, length, false);\n }",
"class_method_signature": "StringChopper.chop(final String input, final int length)",
"constructor": false,
"full_signature": "public static String chop(final String input, final int... | {
"created": null,
"fork": null,
"fork_count": 8,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 3040093,
"size": 17994,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/michaelsembwever/Possom"
} |
3040093_10 | {
"fields": [],
"file": "result-spi/src/test/java/no/sesat/search/result/StringChopperTest.java",
"identifier": "StringChopperTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void CDATAChop() {\n assertEquals(\"<b>and<![CDATA[ <xm]]></b>\", StringChopper.chop(\"<b>and<![CDATA[ <xml>&& fisk]]> <br/>wonk\", 7, true));\n }",
"class_method_signature": "StringChopperTest.CDATAChop()",
"constructor": false,
"full_signature": "@Test public void CDATAC... | {
"fields": [],
"file": "result-spi/src/main/java/no/sesat/search/result/StringChopper.java",
"identifier": "StringChopper",
"interfaces": "",
"methods": [
{
"class_method_signature": "StringChopper.chop(final String input, final int length)",
"constructor": false,
"full_signature": "pub... | {
"body": "public static String chop(final String input, final int length) {\n return chop(input, length, false);\n }",
"class_method_signature": "StringChopper.chop(final String input, final int length)",
"constructor": false,
"full_signature": "public static String chop(final String input, final int... | {
"created": null,
"fork": null,
"fork_count": 8,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 3040093,
"size": 17994,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/michaelsembwever/Possom"
} |
3040093_2 | {
"fields": [],
"file": "generic.sesam/search-command-control/default/src/test/java/no/sesat/search/mode/command/YahooIdpSearchCommandTest.java",
"identifier": "YahooIdpSearchCommandTest",
"interfaces": "",
"superclass": "extends AbstractSearchCommandTest"
} | {
"body": "@Test\n public void testSiteRestriction() throws Exception{\n\n assertEquals(\n \"Site filter not found\",\n \"aftonbladet.se\",\n executeTestOfQuery(\"site:aftonbladet.se banan\", \"+banan\", \"+site:aftonbladet.se\")\n .getFilterBuilde... | {
"fields": [
{
"declarator": "LOG = Logger.getLogger(YahooIdpSearchCommand.class)",
"modifier": "private static final",
"original_string": "private static final Logger LOG = Logger.getLogger(YahooIdpSearchCommand.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"decl... | {
"body": "@Override\n protected String getFilter() {\n return super.getFilter();\n }",
"class_method_signature": "YahooIdpSearchCommand.getFilter()",
"constructor": false,
"full_signature": "@Override protected String getFilter()",
"identifier": "getFilter",
"invocations": [
"getFilter"
... | {
"created": null,
"fork": null,
"fork_count": 8,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 3040093,
"size": 17994,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/michaelsembwever/Possom"
} |
3040093_13 | {
"fields": [],
"file": "result-spi/src/test/java/no/sesat/search/result/StringChopperTest.java",
"identifier": "StringChopperTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void Directive() {\n assertEquals(\"<?xml version=\\\"1.0\\\" encoding=\\\"iso-8859-1\\\"?><attrib name=\\\"allowed_types\\\"> fisk</attrib>\",\n StringChopper.chop(\"<?xml version=\\\"1.0\\\" encoding=\\\"iso-8859-1\\\"?><attrib name=\\\"allowed_types\\\"> fisk\", -1,... | {
"fields": [],
"file": "result-spi/src/main/java/no/sesat/search/result/StringChopper.java",
"identifier": "StringChopper",
"interfaces": "",
"methods": [
{
"class_method_signature": "StringChopper.chop(final String input, final int length)",
"constructor": false,
"full_signature": "pub... | {
"body": "public static String chop(final String input, final int length) {\n return chop(input, length, false);\n }",
"class_method_signature": "StringChopper.chop(final String input, final int length)",
"constructor": false,
"full_signature": "public static String chop(final String input, final int... | {
"created": null,
"fork": null,
"fork_count": 8,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 3040093,
"size": 17994,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/michaelsembwever/Possom"
} |
3040093_1 | {
"fields": [],
"file": "generic.sesam/search-command-control/default/src/test/java/no/sesat/search/mode/command/YahooWebSearchCommandTest.java",
"identifier": "YahooWebSearchCommandTest",
"interfaces": "",
"superclass": "extends AbstractSearchCommandTest"
} | {
"body": "@Test\n public void testSiteRestriction() throws Exception{\n\n assertEquals(\n \"Site filter not found\",\n \"aftonbladet.se\",\n executeTestOfQuery(\"site:aftonbladet.se banan\", \"banan\", \"+site:aftonbladet.se\")\n .getFilterBuilder... | {
"fields": [
{
"declarator": "LOG = Logger.getLogger(YahooWebSearchCommand.class)",
"modifier": "private static final",
"original_string": "private static final Logger LOG = Logger.getLogger(YahooWebSearchCommand.class);",
"type": "Logger",
"var_name": "LOG"
},
{
"decl... | {
"body": "@Override\n protected String getFilter() {\n return super.getFilter();\n }",
"class_method_signature": "YahooWebSearchCommand.getFilter()",
"constructor": false,
"full_signature": "@Override protected String getFilter()",
"identifier": "getFilter",
"invocations": [
"getFilter"
... | {
"created": null,
"fork": null,
"fork_count": 8,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 3040093,
"size": 17994,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/michaelsembwever/Possom"
} |
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