id stringlengths 7 14 | test_class dict | test_case dict | focal_class dict | focal_method dict | repository dict |
|---|---|---|---|---|---|
45257264_30 | {
"fields": [
{
"declarator": "boxes",
"modifier": "@InjectMocks",
"original_string": "@InjectMocks\n\tVagrantBoxes boxes;",
"type": "VagrantBoxes",
"var_name": "boxes"
}
],
"file": "bugminer-server/src/test/java/de/unistuttgart/iste/rss/bugminer/computing/vagrant/VagrantBoxe... | {
"body": "@Test\n\tpublic void testGetName() {\n\t\tassertThat(boxes.getName(SystemSpecification.UBUNTU_1404), is(\"ubuntu/trusty64\"));\n\t}",
"class_method_signature": "VagrantBoxesTest.testGetName()",
"constructor": false,
"full_signature": "@Test public void testGetName()",
"identifier": "testGetName",
... | {
"fields": [
{
"declarator": "BOXES = ImmutableMap.of(\n\t\t\t\"ubuntu/trusty64\", SystemSpecification.UBUNTU_1404)",
"modifier": "private static final",
"original_string": "private static final Map<String, SystemSpecification> BOXES = ImmutableMap.of(\n\t\t\t\"ubuntu/trusty64\", SystemSpecific... | {
"body": "public String getName(SystemSpecification spec) {\n\t\treturn REVERSE.get(spec);\n\t}",
"class_method_signature": "VagrantBoxes.getName(SystemSpecification spec)",
"constructor": false,
"full_signature": "public String getName(SystemSpecification spec)",
"identifier": "getName",
"invocations": [
... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 45257264,
"size": 577,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/bugminer/bugminer"
} |
45257264_26 | {
"fields": [
{
"declarator": "strategy",
"modifier": "@InjectMocks",
"original_string": "@InjectMocks\n\tVagrantStrategy strategy;",
"type": "VagrantStrategy",
"var_name": "strategy"
},
{
"declarator": "boxes",
"modifier": "@Mock",
"original_string": "@Mock... | {
"body": "@Test\n\tpublic void testDestroyNode() throws IOException {\n\t\tFiles.createDirectories(vagrantPath);\n\n\t\tstrategy.destroyNode(prepareNode());\n\n\t\tverify(executor).execute(vagrantPath, \"vagrant\", \"destroy\", \"-f\");\n\t\tassertFalse(vagrantPath + \" should have been deleted\", Files.exists(vagra... | {
"fields": [
{
"declarator": "NAME = \"vagrant\"",
"modifier": "public static final",
"original_string": "public static final String NAME = \"vagrant\";",
"type": "String",
"var_name": "NAME"
},
{
"declarator": "dataPath",
"modifier": "@Autowired\n\t@DataDirector... | {
"body": "@Override\n\tpublic void destroyNode(Node node) throws IOException {\n\t\tPath nodePath = getPath(node);\n\t\tif (!Files.exists(nodePath)) {\n\t\t\treturn;\n\t\t}\n\t\texecutor.execute(nodePath, \"vagrant\", \"destroy\", \"-f\");\n\t\tFileUtils.deleteDirectory(nodePath.toFile());\n\t}",
"class_method_sig... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 45257264,
"size": 577,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/bugminer/bugminer"
} |
45257264_8 | {
"fields": [],
"file": "bugminer-server/src/test/java/de/unistuttgart/iste/rss/bugminer/computing/LocalCommandExecutorTest.java",
"identifier": "LocalCommandExecutorTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n\tpublic void testOutput() throws IOException, InterruptedException {\n\t\tCommandExecutor executor = new LocalCommandExecutor();\n\t\tExecutionResult result = executor.tryExecute(\"echo\", \"test string!\");\n\t\tassertThat(result.getOutput().trim(), is(\"test string!\"));\n\t}",
"class_method_si... | {
"fields": [
{
"declarator": "logger = Logger.getLogger(LocalCommandExecutor.class)",
"modifier": "private final",
"original_string": "private final Logger logger = Logger.getLogger(LocalCommandExecutor.class);",
"type": "Logger",
"var_name": "logger"
}
],
"file": "bugminer-... | {
"body": "@Override\n\tpublic ExecutionResult tryExecute(Path workingDirectory, String... cmd) throws IOException {\n\t\tlogger.debug(\"Executing `\" + StringUtils.join(cmd, ' ') + \" in \" + workingDirectory);\n\t\tFile workdir = workingDirectory == null ? null : workingDirectory.toFile();\n\t\tProcess process = Ru... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 45257264,
"size": 577,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/bugminer/bugminer"
} |
45257264_51 | {
"fields": [
{
"declarator": "FILE_NAMES = {\n\t\t\"org/aspectj/ajdt/ajc/AjdtCommand.java\",\n\t\t\"org/aspectj/ajdt/ajc/BuildArgParser.java\"\n\t}",
"modifier": "private static final",
"original_string": "private static final String[] FILE_NAMES = {\n\t\t\"org/aspectj/ajdt/ajc/AjdtCommand.java... | {
"body": "@Test\n\tpublic void testImport() throws URISyntaxException, SAXException, IOException {\n\t\tPath file = Paths.get(getClass().getResource(\"p_cobertura.xml\").toURI());\n\t\tCoberturaImporter importer = new CoberturaImporter();\n\t\tCoverageReport report = importer.read(ImmutableList.of(file));\n\n\t\tass... | {
"fields": [
{
"declarator": "files",
"modifier": "private",
"original_string": "private List<SourceCodeFile> files;",
"type": "List<SourceCodeFile>",
"var_name": "files"
},
{
"declarator": "filesForNames",
"modifier": "private",
"original_string": "private... | {
"body": "public CoverageReport read(List<Path> allCoverageFiles) throws SAXException, IOException {\n\t\t// filter empty coverage traces\n\t\tfinal List<Path> coverageFiles = allCoverageFiles\n\t\t\t\t.stream()\n\t\t\t\t.filter(f -> {\n\t\t\t\t\ttry (Stream<String> executedLines = Files.lines(f).parallel()\n\t\t\t\... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 45257264,
"size": 577,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/bugminer/bugminer"
} |
45257264_47 | {
"fields": [
{
"declarator": "remoteGitHelper",
"modifier": "@InjectMocks\n\tprivate",
"original_string": "@InjectMocks\n\tprivate RemoteGitHelper remoteGitHelper;",
"type": "RemoteGitHelper",
"var_name": "remoteGitHelper"
},
{
"declarator": "connection",
"modifi... | {
"body": "@Test\n\tpublic void testInstallGitSkipsIfAlreadyInstalled() throws IOException {\n\t\twhen(connection.tryExecute(\"which\", \"git\")).thenReturn(\n\t\t\t\tnew ExecutionResult(0, \"\", \"\"));\n\t\tremoteGitHelper.installGit(connection, SystemSpecification.UBUNTU_1404);\n\t\tverify(connection, never()).exe... | {
"fields": [],
"file": "bugminer-server/src/main/java/de/unistuttgart/iste/rss/bugminer/scm/git/RemoteGitHelper.java",
"identifier": "RemoteGitHelper",
"interfaces": "",
"methods": [
{
"class_method_signature": "RemoteGitHelper.RemoteGitHelper()",
"constructor": true,
"full_signature": ... | {
"body": "public void installGit(SshConnection connection, SystemSpecification os) throws IOException {\n\t\tif (isGitInstalled(connection)) {\n\t\t\treturn;\n\t\t}\n\n\t\tif (!SystemSpecification.UBUNTU.equals(os.getDistributionName())) {\n\t\t\tthrow new UnsupportedOperationException(\n\t\t\t\t\t\"Only ubuntu is s... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 45257264,
"size": 577,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/bugminer/bugminer"
} |
45257264_10 | {
"fields": [
{
"declarator": "parser",
"modifier": "@InjectMocks",
"original_string": "@InjectMocks\n\tSshConfigParser parser;",
"type": "SshConfigParser",
"var_name": "parser"
},
{
"declarator": "VAGRANT_CONFIG = \"Host default\\n\"\n\t\t\t+ \" HostName 127.0.0.1\\n\... | {
"body": "@Test\n\tpublic void testVagrantConfig() {\n\t\tassumeTrue(\"Unix identitfy file path\", SystemUtils.IS_OS_UNIX);\n\t\tSshConfig config = parser.parse(VAGRANT_CONFIG);\n\t\tassertThat(config.getHost(), is(\"127.0.0.1\")); // NOPMD - hard-coded ip\n\t\tassertThat(config.getUser(), is(\"vagrant\"));\n\t\tass... | {
"fields": [
{
"declarator": "DEFAULT_PORT = 22",
"modifier": "private static final",
"original_string": "private static final int DEFAULT_PORT = 22;",
"type": "int",
"var_name": "DEFAULT_PORT"
}
],
"file": "bugminer-server/src/main/java/de/unistuttgart/iste/rss/bugminer/com... | {
"body": "public SshConfig parse(String configStr) {\n\t\tMutableSshConfig result = new MutableSshConfig();\n\t\tfor (String line : configStr.split(\"\\n\")) {\n\t\t\tline = line.trim();\n\t\t\tString[] splits = line.split(\"\\\\s\", 2);\n\t\t\tif (splits.length != 2) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tString key ... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 45257264,
"size": 577,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/bugminer/bugminer"
} |
45257264_4 | {
"fields": [
{
"declarator": "client",
"modifier": "@Mock\n\tprivate",
"original_string": "@Mock\n\tprivate SSHClient client;",
"type": "SSHClient",
"var_name": "client"
},
{
"declarator": "tempDir = new TemporaryDirectory()",
"modifier": "@Rule\n\tpublic",
... | {
"body": "@SuppressWarnings(\"resource\")\n\t@Test\n\tpublic void testTryExecuteIn() throws IOException {\n\t\tSession session = mock(Session.class);\n\t\twhen(client.startSession()).thenReturn(session);\n\t\tCommand command = mock(Command.class);\n\t\twhen(session.exec(\"\\\"cd\\\" \\\"/test/dir\\\" && \\\"test com... | {
"fields": [
{
"declarator": "client",
"modifier": "private final",
"original_string": "private final SSHClient client;",
"type": "SSHClient",
"var_name": "client"
},
{
"declarator": "config",
"modifier": "private final",
"original_string": "private final S... | {
"body": "public ExecutionResult tryExecuteIn(String workingDirectory, String... cmd) throws IOException {\n\t\tString cmdString = escapeCommand(cmd);\n\t\tif (workingDirectory != null) {\n\t\t\tcmdString = escapeCommand(\"cd\", workingDirectory) + \" && \" + cmdString;\n\t\t}\n\n\t\ttry (Command command = client.st... | {
"created": null,
"fork": null,
"fork_count": 2,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 45257264,
"size": 577,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/bugminer/bugminer"
} |
148116142_77 | {
"fields": [],
"file": "noark-core/src/test/java/xyz/noark/core/lang/MutableIntTest.java",
"identifier": "MutableIntTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n\tpublic void testGetAndIncrement() {\n\t\tMutableInt i = new MutableInt(\"1\");\n\t\tassertTrue(i.getAndIncrement() == 1);\n\t}",
"class_method_signature": "MutableIntTest.testGetAndIncrement()",
"constructor": false,
"full_signature": "@Test public void testGetAndIncrement()",
"identifier"... | {
"fields": [
{
"declarator": "serialVersionUID = 1259910250840168103L",
"modifier": "private static final",
"original_string": "private static final long serialVersionUID = 1259910250840168103L;",
"type": "long",
"var_name": "serialVersionUID"
},
{
"declarator": "value... | {
"body": "public final int getAndIncrement() {\n\t\tfinal int oldValue = value;\n\t\tthis.value++;\n\t\treturn oldValue;\n\t}",
"class_method_signature": "MutableInt.getAndIncrement()",
"constructor": false,
"full_signature": "public final int getAndIncrement()",
"identifier": "getAndIncrement",
"invocatio... | {
"created": null,
"fork": null,
"fork_count": 4,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 148116142,
"size": 5512,
"stargazer_count": 10,
"stars": null,
"updates": null,
"url": "https://github.com/xiaoe/noark3"
} |
148116142_20 | {
"fields": [
{
"declarator": "benchmark = new Benchmark(1000)",
"modifier": "private final",
"original_string": "private final Benchmark benchmark = new Benchmark(1000);",
"type": "Benchmark",
"var_name": "benchmark"
}
],
"file": "noark-core/src/test/java/xyz/noark/core/util... | {
"body": "@Test\n\tpublic void asciiSizeInBytes() throws Exception {\n\t\tlong value = Long.MIN_VALUE;\n\t\tassertTrue(StringUtils.asciiSizeInBytes(value) == String.valueOf(value).length());\n\t\tbenchmark.doSomething(\"OKIO的方案:\", () -> StringUtils.asciiSizeInBytes(value));\n\t\tbenchmark.doSomething(\"成龙的方案:\", ()... | {
"fields": [
{
"declarator": "EMPTY = \"\"",
"modifier": "public static final",
"original_string": "public static final String EMPTY = \"\";",
"type": "String",
"var_name": "EMPTY"
},
{
"declarator": "SPACE = \" \"",
"modifier": "public static final",
"orig... | {
"body": "public static int asciiSizeInBytes(long v) {\n\t\tif (v == 0) {\n\t\t\treturn 1;\n\t\t}\n\t\tif (v == Long.MIN_VALUE) {\n\t\t\treturn 20;\n\t\t}\n\t\tboolean negative = false;\n\t\tif (v < 0) {\n\t\t\tv = -v;\n\t\t\tnegative = true;\n\t\t}\n\t\tint width = v < 100000000L\n\t\t\t\t//\n\t\t\t\t? v < 10000L\n... | {
"created": null,
"fork": null,
"fork_count": 4,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 148116142,
"size": 5512,
"stargazer_count": 10,
"stars": null,
"updates": null,
"url": "https://github.com/xiaoe/noark3"
} |
148116142_36 | {
"fields": [],
"file": "noark-core/src/test/java/xyz/noark/core/util/DateUtilsTest.java",
"identifier": "DateUtilsTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n\tpublic void testFormatTime() {\n\t\tassertTrue(\"00:01:40\".equals(DateUtils.formatTime(100)));\n\t\tassertTrue(\"00:01:00\".equals(DateUtils.formatTime(60)));\n\t\tassertTrue(\"00:00:00\".equals(DateUtils.formatTime(0)));\n\t\tassertTrue(\"00:00:00\".equals(DateUtils.formatTime(-1)));\n\t\tassert... | {
"fields": [
{
"declarator": "MILLISECOND_PER_SECOND = 1000",
"modifier": "public static final",
"original_string": "public static final int MILLISECOND_PER_SECOND = 1000;",
"type": "int",
"var_name": "MILLISECOND_PER_SECOND"
},
{
"declarator": "SECOND_PER_MINUTE = 60"... | {
"body": "public static String formatTime(long seconds) {\n\t\tif (seconds <= 0) {\n\t\t\treturn \"00:00:00\";\n\t\t}\n\t\t// 秒数\n\t\tint second = (int) (seconds % SECOND_PER_MINUTE);\n\t\tseconds = seconds / SECOND_PER_MINUTE;\n\t\t// 分钟\n\t\tint minute = (int) (seconds % MINUTE_PER_HOUR);\n\t\tseconds = seconds / ... | {
"created": null,
"fork": null,
"fork_count": 4,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 148116142,
"size": 5512,
"stargazer_count": 10,
"stars": null,
"updates": null,
"url": "https://github.com/xiaoe/noark3"
} |
148116142_61 | {
"fields": [
{
"declarator": "MAX = 20",
"modifier": "private static final",
"original_string": "private static final int MAX = 20;",
"type": "int",
"var_name": "MAX"
},
{
"declarator": "list = new ArrayList<>()",
"modifier": "",
"original_string": "List<Pe... | {
"body": "@Test\n\tpublic void testGroupingBy1() {\n\t\tassertTrue(CollectionUtils.groupingBy(list, Pet::getId).size() == MAX);\n\t}",
"class_method_signature": "CollectionUtilsTest.testGroupingBy1()",
"constructor": false,
"full_signature": "@Test public void testGroupingBy1()",
"identifier": "testGroupingB... | {
"fields": [],
"file": "noark-core/src/main/java/xyz/noark/core/util/CollectionUtils.java",
"identifier": "CollectionUtils",
"interfaces": "",
"methods": [
{
"class_method_signature": "CollectionUtils.isEmpty(final Collection<?> collection)",
"constructor": false,
"full_signature": "pub... | {
"body": "public static <K, V> Map<K, List<V>> groupingBy(final Collection<V> collection, Function<? super V, ? extends K> keyMapper) {\n\t\treturn collection.stream().collect(Collectors.groupingBy(keyMapper));\n\t}",
"class_method_signature": "CollectionUtils.groupingBy(final Collection<V> collection, Function<? ... | {
"created": null,
"fork": null,
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"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 148116142,
"size": 5512,
"stargazer_count": 10,
"stars": null,
"updates": null,
"url": "https://github.com/xiaoe/noark3"
} |
148116142_3 | {
"fields": [
{
"declarator": "benchmark = new Benchmark(1)",
"modifier": "private final",
"original_string": "private final Benchmark benchmark = new Benchmark(1);",
"type": "Benchmark",
"var_name": "benchmark"
},
{
"declarator": "bean = new TestBean()",
"modifie... | {
"body": "@Test\n\tpublic void testJdkReflect() throws Exception {\n\t\tbenchmark.doSomething(\"testJdkReflect:\", () -> method.invoke(bean, 1));\n\t}",
"class_method_signature": "MethodAccessTest.testJdkReflect()",
"constructor": false,
"full_signature": "@Test public void testJdkReflect()",
"identifier": "... | {
"fields": [
{
"declarator": "methodNames",
"modifier": "private",
"original_string": "private String[] methodNames;",
"type": "String[]",
"var_name": "methodNames"
},
{
"declarator": "parameterTypes",
"modifier": "private",
"original_string": "private Clas... | {
"body": "abstract public Object invoke(Object object, int methodIndex, Object... args);",
"class_method_signature": "MethodAccess.invoke(Object object, int methodIndex, Object... args)",
"constructor": false,
"full_signature": "abstract public Object invoke(Object object, int methodIndex, Object... args)",
... | {
"created": null,
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"size": 5512,
"stargazer_count": 10,
"stars": null,
"updates": null,
"url": "https://github.com/xiaoe/noark3"
} |
148116142_82 | {
"fields": [],
"file": "noark-core/src/test/java/xyz/noark/core/lang/MutableIntTest.java",
"identifier": "MutableIntTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n\tpublic void testAddAndGet() {\n\t\tMutableInt i = new MutableInt(0);\n\t\tassertTrue(i.addAndGet(1) == 1);\n\t}",
"class_method_signature": "MutableIntTest.testAddAndGet()",
"constructor": false,
"full_signature": "@Test public void testAddAndGet()",
"identifier": "testAddAndGet",
"invoc... | {
"fields": [
{
"declarator": "serialVersionUID = 1259910250840168103L",
"modifier": "private static final",
"original_string": "private static final long serialVersionUID = 1259910250840168103L;",
"type": "long",
"var_name": "serialVersionUID"
},
{
"declarator": "value... | {
"body": "public final int addAndGet(int delta) {\n\t\treturn value += delta;\n\t}",
"class_method_signature": "MutableInt.addAndGet(int delta)",
"constructor": false,
"full_signature": "public final int addAndGet(int delta)",
"identifier": "addAndGet",
"invocations": [],
"modifiers": "public final",
"... | {
"created": null,
"fork": null,
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"is_fork": false,
"language": "Java",
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"size": 5512,
"stargazer_count": 10,
"stars": null,
"updates": null,
"url": "https://github.com/xiaoe/noark3"
} |
148116142_16 | {
"fields": [
{
"declarator": "benchmark = new Benchmark(1000)",
"modifier": "private final",
"original_string": "private final Benchmark benchmark = new Benchmark(1000);",
"type": "Benchmark",
"var_name": "benchmark"
}
],
"file": "noark-core/src/test/java/xyz/noark/core/util... | {
"body": "@Test\n\tpublic void testIsEmpty() {\n\t\tassertTrue(StringUtils.isEmpty(\"\"));\n\t\tassertTrue(StringUtils.isEmpty(null));\n\t\tassertTrue(!StringUtils.isEmpty(\" \"));\n\t\tassertTrue(!StringUtils.isEmpty(\"test\"));\n\t\tassertTrue(!StringUtils.isEmpty(\" test \"));\n\t}",
"class_method_signature": ... | {
"fields": [
{
"declarator": "EMPTY = \"\"",
"modifier": "public static final",
"original_string": "public static final String EMPTY = \"\";",
"type": "String",
"var_name": "EMPTY"
},
{
"declarator": "SPACE = \" \"",
"modifier": "public static final",
"orig... | {
"body": "public static boolean isEmpty(final String text) {\n\t\treturn text == null || text.length() == 0;\n\t}",
"class_method_signature": "StringUtils.isEmpty(final String text)",
"constructor": false,
"full_signature": "public static boolean isEmpty(final String text)",
"identifier": "isEmpty",
"invoc... | {
"created": null,
"fork": null,
"fork_count": 4,
"is_fork": false,
"language": "Java",
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"repo_id": 148116142,
"size": 5512,
"stargazer_count": 10,
"stars": null,
"updates": null,
"url": "https://github.com/xiaoe/noark3"
} |
148116142_41 | {
"fields": [],
"file": "noark-core/src/test/java/xyz/noark/core/util/ByteBufUtilsTest.java",
"identifier": "ByteBufUtilsTest",
"interfaces": "",
"superclass": ""
} | {
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148116142_57 | {
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148116142_56 | {
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148116142_40 | {
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148116142_17 | {
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148116142_83 | {
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148116142_2 | {
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148116142_60 | {
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148116142_37 | {
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148116142_21 | {
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148116142_76 | {
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148116142_84 | {
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"... | {
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148116142_9 | {
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148116142_10 | {
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148116142_47 | {
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148116142_51 | {
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148116142_71 | {
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148116142_26 | {
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148116142_30 | {
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148116142_67 | {
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148116142_5 | {
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148116142_4 | {
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148116142_66 | {
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148116142_31 | {
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... | {
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148116142_27 | {
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148116142_70 | {
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148116142_50 | {
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148116142_46 | {
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148116142_8 | {
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148116142_11 | {
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148116142_85 | {
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148116142_53 | {
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148116142_45 | {
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148116142_12 | {
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148116142_69 | {
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148116142_28 | {
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148116142_49 | {
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148116142_7 | {
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148116142_65 | {
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148116142_32 | {
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148116142_24 | {
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148116142_73 | {
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148116142_72 | {
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{
"declarator": "PREFIX_GET_METHOD_INDEX = 3... | {
"body": "public static String genSetMethodName(Field field) {\n\t\tint len = field.getName().length();\n\t\tStringBuilder sb = new StringBuilder(len + 3);\n\t\tsb.append(\"set\").append(field.getName());\n\t\tif (Character.isLowerCase(sb.charAt(PREFIX_SET_METHOD_INDEX))) {\n\t\t\tsb.setCharAt(PREFIX_SET_METHOD_INDE... | {
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148116142_33 | {
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} | {
"body": "@Test\n\tpublic void testIpToLong() {\n\t\tassertTrue(2130706433 == IpUtils.ipToLong(\"127.0.0.1\"));\n\t}",
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{
"declarator": "A_BEGIN = ipToLong(\"10.0.0.0\")",
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{
"declarator": "A_END = ipToLong(\"10.255.255.255\")",
... | {
"body": "public static long ipToLong(String ipAddress) {\n\t\tfinal String[] array = StringUtils.split(ipAddress, \".\");\n\t\tlong result = 0;\n\t\tfor (int i = IP_LOOP_NUM; i >= 0; i--) {\n\t\t\tresult |= Long.parseLong(array[3 - i]) << (i * 8);\n\t\t}\n\t\treturn result;\n\t}",
"class_method_signature": "IpUti... | {
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148116142_64 | {
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{
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"body": "@Test\n\tpublic void testMatching2() {\n\t\tassertTrue(CollectionUtils.matching(list, Pet::getLevel, 0).orElse(null).getId() == 0);\n\t\tassertTrue(CollectionUtils.matching(list, Pet::getLevel, 1).orElse(null).getId() == 0);\n\t\tassertTrue(CollectionUtils.matching(list, Pet::getLevel, 25).orElse(null).get... | {
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"class_method_signature": "CollectionUtils.matching(final Colle... | {
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148116142_6 | {
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} | {
"body": "@Test\n\tpublic void test() {\n\t\tConvertManager.getInstance().register(RewardConverter.class);\n\t\tCsv csv = new Csv('\t');\n\t\tFile file = new File(\"src/test/resources/\");\n\t\tList<ItemTemplate> ts = csv.loadAll(file.getAbsolutePath(), ItemTemplate.class);\n\t\tassertTrue(ts.size() == 22);\n\n\t\tL... | {
"fields": [
{
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{
"dec... | {
"body": "public <T> List<T> loadAll(String templatePath, Class<T> klass) {\n\t\treturn loadAll(templatePath, StringUtils.EMPTY, klass);\n\t}",
"class_method_signature": "Csv.loadAll(String templatePath, Class<T> klass)",
"constructor": false,
"full_signature": "public List<T> loadAll(String templatePath, Clas... | {
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148116142_48 | {
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} | {
"body": "@Test\n\tpublic void testRandomByWeight() {\n\t\tList<TestData> data = new ArrayList<>();\n\t\tTestData e = new TestData();\n\t\te.setId(1);\n\t\te.setWeight(RandomUtils.nextInt(100));\n\t\tdata.add(e);\n\n\t\tTestData random = RandomUtils.randomByWeight(data, TestData::getWeight);\n\t\tassertTrue(random.g... | {
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{
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... | {
"body": "public static <K> K randomByWeight(Map<K, Integer> data) {\n\t\tfinal int sum = data.values().stream().reduce(0, (a, b) -> a + b);\n\t\tif (sum <= 0) {\n\t\t\treturn randomList(new ArrayList<>(data.keySet()));\n\t\t}\n\n\t\tfinal int random = nextInt(sum);\n\t\tint step = 0;\n\t\tfor (Map.Entry<K, Integer>... | {
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148116142_29 | {
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"... | {
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{
"declarator": "PREFIX_GET_METHOD_INDEX = 3... | {
"body": "public static List<Field> getAllField(final Class<?> klass) {\n\t\tList<Field> result = new ArrayList<>();\n\t\tfor (Class<?> target = klass; target != Object.class; target = target.getSuperclass()) {\n\t\t\tfor (Field field : target.getDeclaredFields()) {\n\t\t\t\tresult.add(field);\n\t\t\t}\n\t\t}\n\t\tr... | {
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148116142_68 | {
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} | {
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{
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"modifiers": "@Override p... | {
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148116142_13 | {
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{
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],
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"i... | {
"body": "@Test\n\tpublic void testIssuesIr7r1() {\n\t\tassertTrue(!scanner.findAll(\"今天真是个好日子\").isEmpty());\n\t\tassertTrue(!scanner.findAll(\"今日天真是个好子\").isEmpty());\n\t\tassertTrue(!scanner.findAll(\"日今天日真是个好子\").isEmpty());\n\t\tassertTrue(!scanner.findAll(\"今天真日是个好子日\").isEmpty());\n\t}",
"class_method_signa... | {
"fields": [
{
"declarator": "SBC_CHAR_START = 65281",
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{
"declarator": "SBC_CHAR_END = 65374",
"modifier": ... | {
"body": "public List<String> findAll(final String text) {\n\t\treturn this.analysis(text, 0, false).getWords();\n\t}",
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"full_signature": "public List<String> findAll(final String text)",
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"invo... | {
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148116142_44 | {
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} | {
"body": "@Test\n\tpublic void testGetOrMaxKey() {\n\t\tMap<Integer, Integer> map = new HashMap<>(16);\n\t\tmap.put(1, 10);\n\t\tmap.put(2, 15);\n\t\tmap.put(3, 20);\n\t\tmap.put(4, 25);\n\t\tmap.put(5, 30);\n\t\tmap.put(10, 100);\n\t\tassertTrue(MapUtils.getOrMaxKey(map, 1) == 10);\n\t\tassertTrue(MapUtils.getOrMax... | {
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"body": "public static <V> V getOrMaxKey(final Map<Integer, V> map, Integer key) {\n\t\tV v = map.get(key);\n\t\tif (v != null) {\n\t\t\treturn v;\n\t\t}\n\n\t\t// Key不存在的情况，那就找到Key刚好小于他且是最大的那个值.\n\t\treturn map.entrySet().stream().filter(x -> x.getKey() < key).max(Comparator.comparing(Map.Entry::getKey)).map(Map.E... | {
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148116142_52 | {
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} | {
"body": "@Test\n\tpublic void testMultiplyExactLongLong() {\n\t\tassertTrue(MathUtils.multiplyExact(2L, 2L) == 4);\n\t\tassertTrue(MathUtils.multiplyExact(2L, Long.MAX_VALUE) == Long.MAX_VALUE);\n\t}",
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{
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{
"declarator": "HUNDRED = 100.0",
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"original_s... | {
"body": "public static int multiplyExact(int x, int y) {\n\t\ttry {\n\t\t\treturn Math.multiplyExact(x, y);\n\t\t} catch (ArithmeticException e) {\n\t\t\treturn Integer.MAX_VALUE;\n\t\t}\n\t}",
"class_method_signature": "MathUtils.multiplyExact(int x, int y)",
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148116142_59 | {
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{
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"full_signature": "pub... | {
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148116142_18 | {
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{
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],
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"body": "@Test\n\tpublic void testLength() {\n\t\tassertTrue(StringUtils.length(null) == 0);\n\t\tassertTrue(StringUtils.length(\"\") == 0);\n\t\tassertTrue(StringUtils.length(\" \") == 1);\n\t\tassertTrue(StringUtils.length(\"test\") == 4);\n\t\tassertTrue(StringUtils.length(\"我爱中国\") == 8);\n\t}",
"class_method... | {
"fields": [
{
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{
"declarator": "SPACE = \" \"",
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"orig... | {
"body": "public static int length(final String text) {\n\t\tif (text == null) {\n\t\t\treturn 0;\n\t\t}\n\n\t\tint sum = 0;\n\t\tfor (int i = 0, len = text.length(); i < len; i++) {\n\t\t\tsum += text.charAt(i) > 127 ? 2 : 1;\n\t\t}\n\t\treturn sum;\n\t}",
"class_method_signature": "StringUtils.length(final Strin... | {
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148116142_1 | {
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} | {
"body": "@Test\n\tpublic void testBuild() {\n\t\tMessageAnalyzer analyzer = new MessageAnalyzer(\"xx={}\");\n\t\tStringBuilder sb = new StringBuilder();\n\t\tanalyzer.build(sb, new Object[] { new byte[] { 1, 2 } });\n\t\tassertTrue(\"xx=[1, 2]\".equals(sb.toString()));\n\t}",
"class_method_signature": "MessageAna... | {
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{
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{
"declarator": "DELIMIT_STOP = '}'",
"modifier": "private ... | {
"body": "public void build(StringBuilder sb, Object[] args) {\n\t\tfor (Placeholder object : caches) {\n\t\t\tobject.build(sb, args);\n\t\t}\n\n\t\t// 如果参数比占位符多的话，也要输出.\n\t\tif (args.length > count) {\n\t\t\tfor (int i = count; i < args.length; i++) {\n\t\t\t\tappend(sb, \",{\");\n\t\t\t\tappend(sb, i);\n\t\t\t\tap... | {
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148116142_63 | {
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148116142_34 | {
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} | {
"body": "@Test\n\tpublic void testIsInnerIp() {\n\t\tassertTrue(IpUtils.isInnerIp(\"127.0.0.1\"));\n\n\t\tassertTrue(IpUtils.isInnerIp(\"10.0.0.0\"));\n\t\tassertTrue(IpUtils.isInnerIp(\"10.0.0.1\"));\n\t\tassertTrue(IpUtils.isInnerIp(\"10.255.255.254\"));\n\t\tassertTrue(IpUtils.isInnerIp(\"10.255.255.255\"));\n\n... | {
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{
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... | {
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148116142_22 | {
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{
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"body": "public static String format(String str, Object... arguments) {\n\t\tif (arguments.length == 0) {\n\t\t\treturn str;\n\t\t}\n\t\t// FIXME 这个方法基本用于日志，邮件内容拼接，可以参考日志中使用的方案做一个缓存策略\n\t\tfor (int i = 0, len = arguments.length; i < len; i++) {\n\t\t\tstr = str.replace(join(\"{\", String.valueOf(i), \"}\"), String.... | {
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148116142_75 | {
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148116142_55 | {
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} | {
"body": "@Test\n\tpublic void testPlunder() {\n\t\tLinkedHashMap<Integer, Long> resources = new LinkedHashMap<>();\n\t\tresources.put(301, RandomUtils.nextLong(1, 88888));\n\t\tresources.put(302, RandomUtils.nextLong(1, 88888));\n\t\tresources.put(303, RandomUtils.nextLong(1, 88888));\n\t\tresources.put(304, Random... | {
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{
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{
"declarator": "HUNDRED = 100.0",
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"body": "public static <T> Map<T, Long> plunder(Map<T, Long> resources, long max, Map<T, Integer> ratio) {\n\t\tfinal Map<T, Long> result = new HashMap<>(resources.size());\n\t\tfinal long step = max / Math.min(1000, Math.max(10, ratio.values().stream().reduce(0, (a, b) -> a + b)));\n\t\t// 总计要抢的资源量\n\t\tlong total... | {
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148116142_43 | {
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} | {
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148116142_14 | {
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148116142_80 | {
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148116142_38 | {
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} | {
"body": "@Test\n\tpublic void testToSeconds() throws ParseException {\n\t\tSimpleDateFormat sdf = new SimpleDateFormat(\"yyyy-MM-dd HH:mm:ss:SSS\");\n\t\tDate d1 = sdf.parse(\"2018-12-12 23:59:59:888\");\n\t\tDate d2 = sdf.parse(\"2018-12-13 00:00:00:888\");\n\t\tDate d3 = sdf.parse(\"2018-12-13 00:00:01:888\");\n\... | {
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{
"declarator": "SECOND_PER_MINUTE = 60"... | {
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148116142_79 | {
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} | {
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148116142_78 | {
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148116142_39 | {
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148116142_81 | {
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148116142_15 | {
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"body": "@Test\n\tpublic void test() {\n\t\tNoarkPropertiesLoader loader = new NoarkPropertiesLoader();\n\t\tMap<String, String> config = loader.loadProperties(\"dev\");\n\n\t\tassertTrue(\"中国\".equals(config.get(\"noark.key.test\")));\n\t\tassertTrue(\"2\".equals(config.get(\"noark.server.id\")));\n\t\tassertTrue(... | {
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148116142_42 | {
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148116142_54 | {
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"body": "@Test\n\tpublic void testGetValue() {\n\t\tMutableInt i = new MutableInt(\"1\");\n\t\tassertTrue(i.getValue() == 1);\n\t}",
"class_method_signature": "MutableIntTest.testGetValue()",
"constructor": false,
"full_signature": "@Test public void testGetValue()",
"identifier": "testGetValue",
"invocat... | {
"fields": [
{
"declarator": "serialVersionUID = 1259910250840168103L",
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"original_string": "private static final long serialVersionUID = 1259910250840168103L;",
"type": "long",
"var_name": "serialVersionUID"
},
{
"declarator": "value... | {
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"constructor": false,
"full_signature": "@Override public Integer getValue()",
"identifier": "getValue",
"invocations": [
"valueOf"
],
"modifiers": "@Over... | {
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148116142_23 | {
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"var_name": "name"
},
{
"declarator": "test1",
"modifier": "@TplAttr(nam... | {
"body": "@Test\n\tpublic void testWriteFieldObjectStringObject() {\n\t\tFieldUtilsTest test = new FieldUtilsTest();\n\t\tFieldUtils.writeField(test, \"test1\", 1);\n\t\tassertTrue(test.test1 == 1);\n\n\t\tFieldUtils.writeField(test, \"test2\", 2);\n\t\tassertTrue(test.getTest2() == 2);\n\t}",
"class_method_signat... | {
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{
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"type": "int",
"var_name": "PREFIX_IS_METHOD_INDEX"
},
{
"declarator": "PREFIX_GET_METHOD_INDEX = 3... | {
"body": "public static void writeField(final Object target, final Field field, final Object value) {\n\t\tif (!field.isAccessible()) {\n\t\t\tfield.setAccessible(true);\n\t\t}\n\t\ttry {\n\t\t\tfield.set(target, value);\n\t\t} catch (IllegalArgumentException | IllegalAccessException e) {\n\t\t\tthrow new ServerBoot... | {
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} |
148116142_35 | {
"fields": [
{
"declarator": "BENCHMARK = new Benchmark(1000)",
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"type": "Benchmark",
"var_name": "BENCHMARK"
}
],
"file": "noark-core/src/test/java/xyz/n... | {
"body": "@Test\n\tpublic void testCalculate() throws Exception {\n\t\tbyte[] buf = new byte[] { 0x00, 0x64, 0x01, 0x31, 0x31, (byte) 0xD1, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x03, 0x00, 0x00, 0x00, 0x00, 0x00, 0x16, 0x28, 0x23, 0x79, 0x65, 0x61, 0x72, 0x30, 0x5E, 0x30, 0x23, 0x29, 0x28, 0x40, 0x31, 0x40, 0x29, 0x3... | {
"fields": [
{
"declarator": "TABLE[] = { 0x00000000, 0x77073096, 0xee0e612c, 0x990951ba, 0x076dc419, 0x706af48f, 0xe963a535, 0x9e6495a3, 0x0edb8832, 0x79dcb8a4, 0xe0d5e91e, 0x97d2d988, 0x09b64c2b, 0x7eb17cbd, 0xe7b82d07, 0x90bf1d91, 0x1db71064, 0x6ab020f2,\n\t\t\t0xf3b97148, 0x84be41de, 0x1adad47d, 0x6ddd... | {
"body": "public static int calculate(byte[] array) {\n\t\tint crc = 0xffffffff;\n\t\tfor (byte b : array) {\n\t\t\tcrc = crc >>> 8 ^ TABLE[(crc ^ b) & 0xff];\n\t\t}\n\t\treturn crc ^ 0xffffffff;\n\t}",
"class_method_signature": "Crc32Utils.calculate(byte[] array)",
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148116142_62 | {
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{
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},
{
"declarator": "list = new ArrayList<>()",
"modifier": "",
"original_string": "List<Pe... | {
"body": "@Test\n\tpublic void testGroupingBy2() {\n\t\tPairMap<Integer, Integer, List<Pet>> result = CollectionUtils.groupingBy(list, Pet::getId, Pet::getLevel);\n\t\tassertTrue(result.size() == 20);\n\t}",
"class_method_signature": "CollectionUtilsTest.testGroupingBy2()",
"constructor": false,
"full_signatur... | {
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{
"class_method_signature": "CollectionUtils.isEmpty(final Collection<?> collection)",
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"full_signature": "pub... | {
"body": "public static <K, V> Map<K, List<V>> groupingBy(final Collection<V> collection, Function<? super V, ? extends K> keyMapper) {\n\t\treturn collection.stream().collect(Collectors.groupingBy(keyMapper));\n\t}",
"class_method_signature": "CollectionUtils.groupingBy(final Collection<V> collection, Function<? ... | {
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} |
148116142_19 | {
"fields": [
{
"declarator": "benchmark = new Benchmark(1000)",
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"type": "Benchmark",
"var_name": "benchmark"
}
],
"file": "noark-core/src/test/java/xyz/noark/core/util... | {
"body": "@Test\n\tpublic void testSplit() throws Exception {\n\t\tassertTrue(StringUtils.split(\"1,2,3\", \",\").length == 3);\n\t\tassertTrue(StringUtils.split(\"1,2,3,\", \",\").length == 3);\n\t\tassertTrue(StringUtils.split(\"1,2,3,,,\", \",\").length == 3);\n\t\tassertTrue(StringUtils.split(\"127.0.0.1\", \".\... | {
"fields": [
{
"declarator": "EMPTY = \"\"",
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},
{
"declarator": "SPACE = \" \"",
"modifier": "public static final",
"orig... | {
"body": "public static String[] split(final String str, final String separatorChars) {\n\t\treturn splitWorker(str, separatorChars, -1, false);\n\t}",
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148116142_0 | {
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"superclass": ""
} | {
"body": "@Test\n\tpublic void testMessageAnalyzer() {\n\t\tMessageAnalyzer analyzer = new MessageAnalyzer(\"1111{}1{}{}1{}\");\n\t\tassertTrue(analyzer.getCount() == 4);\n\t}",
"class_method_signature": "MessageAnalyzerTest.testMessageAnalyzer()",
"constructor": false,
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{
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},
{
"declarator": "DELIMIT_STOP = '}'",
"modifier": "private ... | {
"body": "MessageAnalyzer(String key) {\n\t\tinit(key);\n\t\tthis.caches.trimToSize();\n\t}",
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"constructor": true,
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"invocations": [],
"modifiers": "... | {
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148116142_58 | {
"fields": [
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},
{
"declarator": "list = new ArrayList<>()",
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"original_string": "List<Pe... | {
"body": "@Test\n\tpublic void testIsEmpty() {\n\t\tassertFalse(CollectionUtils.isEmpty(list));\n\t}",
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"constructor": false,
"full_signature": "@Test public void testIsEmpty()",
"identifier": "testIsEmpty",
"invocations": [
"assertFalse",
... | {
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"methods": [
{
"class_method_signature": "CollectionUtils.isEmpty(final Collection<?> collection)",
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"full_signature": "pub... | {
"body": "public static boolean isEmpty(final Collection<?> collection) {\n\t\treturn collection == null || collection.isEmpty();\n\t}",
"class_method_signature": "CollectionUtils.isEmpty(final Collection<?> collection)",
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"full_signature": "public static boolean isEmpty(final Collection<?... | {
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} |
52478731_59 | {
"fields": [
{
"declarator": "log = LogFactory.getLog( DatasetCombinerTest.class.getName() )",
"modifier": "private static final",
"original_string": "private static final Log log = LogFactory.getLog( DatasetCombinerTest.class.getName() );",
"type": "Log",
"var_name": "log"
},
... | {
"body": "@Test\n public void testFindGSE611() throws Exception {\n GeoFamilyParser parser = new GeoFamilyParser();\n\n try (InputStream is = new GZIPInputStream(\n this.getClass().getResourceAsStream( \"/data/loader/expression/geo/GSE611Short/GDS428.soft.gz\" ) )) {\n pars... | {
"fields": [
{
"declarator": "factory = DocumentBuilderFactory.newInstance()",
"modifier": "static final",
"original_string": "static final DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();",
"type": "DocumentBuilderFactory",
"var_name": "factory"
},
{
... | {
"body": "public GeoSampleCorrespondence findGSECorrespondence( Collection<GeoDataset> dataSets ) {\n\n if ( dataSets == null )\n return null;\n if ( dataSets.size() == 0 ) {\n throw new IllegalArgumentException( \"No datasets!\" );\n }\n\n this.checkPlatformsMatchSe... | {
"created": null,
"fork": null,
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"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/PavlidisLab/Gemma"
} |
52478731_2 | {
"fields": [
{
"declarator": "suc",
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"type": "SignupController",
"var_name": "suc"
},
{
"declarator": "expressionExperimentService",
"modifier": "@Autowired\... | {
"body": "@SuppressWarnings(\"Duplicates\") // Not in this project\n @Test\n public void testSignup() throws Exception {\n int numThreads = 10; // too high and we run out of connections, which is not what we're testing.\n final int numsignupsperthread = 20;\n final Random random = new Rand... | {
"fields": [
{
"declarator": "passwordEncoder",
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"original_string": "@Autowired\n private PasswordEncoder passwordEncoder;",
"type": "PasswordEncoder",
"var_name": "passwordEncoder"
},
{
"declarator": "userManager",
"modif... | {
"body": "@RequestMapping(value = \"/signup.html\", method = RequestMethod.POST)\n public void signup( HttpServletRequest request, HttpServletResponse response ) throws Exception {\n\n JSONUtil jsonUtil = new JSONUtil( request, response );\n String jsonText = null;\n\n String password = reque... | {
"created": null,
"fork": null,
"fork_count": 1,
"is_fork": false,
"language": "Java",
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"size": 460145,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/PavlidisLab/Gemma"
} |
52478731_18 | {
"fields": [
{
"declarator": "log = LogFactory.getLog( PubMedXMLFetcherTest.class.getName() )",
"modifier": "private static final",
"original_string": "private static final Log log = LogFactory.getLog( PubMedXMLFetcherTest.class.getName() );",
"type": "Log",
"var_name": "log"
},... | {
"body": "@Test\n public final void testRetrieveByHTTP2() {\n try {\n BibliographicReference br = pmf.retrieveByHTTP( 24850731 );\n\n assertNotNull( br );\n\n assertEquals(\n \"Iwata-Yoshikawa, Naoko; Uda, Akihiko; Suzuki, Tadaki; Tsunetsugu-Yokota, Yasuk... | {
"fields": [
{
"declarator": "log = LogFactory.getLog( PubMedXMLFetcher.class )",
"modifier": "private static final",
"original_string": "private static final Log log = LogFactory.getLog( PubMedXMLFetcher.class );",
"type": "Log",
"var_name": "log"
},
{
"declarator": "... | {
"body": "public Collection<BibliographicReference> retrieveByHTTP( Collection<Integer> pubMedIds ) throws IOException {\n StringBuilder buf = new StringBuilder();\n for ( Integer integer : pubMedIds ) {\n buf.append( integer ).append( \",\" );\n }\n URL toBeGotten = new URL( u... | {
"created": null,
"fork": null,
"fork_count": 1,
"is_fork": false,
"language": "Java",
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"repo_id": 52478731,
"size": 460145,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/PavlidisLab/Gemma"
} |
52478731_63 | {
"fields": [
{
"declarator": "log = LogFactory.getLog( DatasetCombinerTest.class.getName() )",
"modifier": "private static final",
"original_string": "private static final Log log = LogFactory.getLog( DatasetCombinerTest.class.getName() );",
"type": "Log",
"var_name": "log"
},
... | {
"body": "@Test\n public void testGDS186() throws Exception {\n GeoFamilyParser parser = new GeoFamilyParser();\n\n try (InputStream is = new GZIPInputStream(\n this.getClass().getResourceAsStream( \"/data/loader/expression/geo/gse106Short/GDS186.soft.gz\" ) )) {\n parser.p... | {
"fields": [
{
"declarator": "factory = DocumentBuilderFactory.newInstance()",
"modifier": "static final",
"original_string": "static final DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();",
"type": "DocumentBuilderFactory",
"var_name": "factory"
},
{
... | {
"body": "public GeoSampleCorrespondence findGSECorrespondence( Collection<GeoDataset> dataSets ) {\n\n if ( dataSets == null )\n return null;\n if ( dataSets.size() == 0 ) {\n throw new IllegalArgumentException( \"No datasets!\" );\n }\n\n this.checkPlatformsMatchSe... | {
"created": null,
"fork": null,
"fork_count": 1,
"is_fork": false,
"language": "Java",
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"repo_id": 52478731,
"size": 460145,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/PavlidisLab/Gemma"
} |
52478731_34 | {
"fields": [],
"file": "gemma-core/src/test/java/ubic/gemma/core/loader/genome/gene/ncbi/NCBIGeneHistoryParserTest.java",
"identifier": "NCBIGeneHistoryParserTest",
"interfaces": "",
"superclass": ""
} | {
"body": "@Test\n public void testParseB() throws Exception {\n\n NcbiGeneHistoryParser parser = new NcbiGeneHistoryParser();\n parser.parse( NCBIGeneHistoryParserTest.class.getResourceAsStream( \"/data/loader/genome/gene/gene_history.rat.sample\" ) );\n\n String r = parser.discontinuedIdForS... | {
"fields": [
{
"declarator": "GENE_HISTORY_FILE_NUM_FIELDS = 5",
"modifier": "private static final",
"original_string": "private static final int GENE_HISTORY_FILE_NUM_FIELDS = 5;",
"type": "int",
"var_name": "GENE_HISTORY_FILE_NUM_FIELDS"
},
{
"declarator": "id2histor... | {
"body": "public String discontinuedIdForSymbol( String geneSymbol, Integer taxonId ) {\n if ( !discontinuedGenes.containsKey( taxonId ) )\n return null;\n return discontinuedGenes.get( taxonId ).get( geneSymbol );\n }",
"class_method_signature": "NcbiGeneHistoryParser.discontinuedIdFor... | {
"created": null,
"fork": null,
"fork_count": 1,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 52478731,
"size": 460145,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/PavlidisLab/Gemma"
} |
52478731_22 | {
"fields": [
{
"declarator": "log = LogFactory.getLog( PubMedSearchTest.class.getName() )",
"modifier": "private static final",
"original_string": "private static final Log log = LogFactory.getLog( PubMedSearchTest.class.getName() );",
"type": "Log",
"var_name": "log"
}
],
"... | {
"body": "@Test\n public void testSearchAndRetrieveByHTTPInChunks() throws Exception {\n try {\n PubMedSearch pms = new PubMedSearch();\n Collection<String> searchTerms = new HashSet<>();\n searchTerms.add( \"brain\" );\n searchTerms.add( \"hippocampus\" );\n ... | {
"fields": [
{
"declarator": "log = LogFactory.getLog( PubMedSearch.class )",
"modifier": "private static final",
"original_string": "private static final Log log = LogFactory.getLog( PubMedSearch.class );",
"type": "Log",
"var_name": "log"
},
{
"declarator": "CHUNK_SI... | {
"body": "public Collection<BibliographicReference> searchAndRetrieveByHTTP( Collection<String> searchTerms )\n throws IOException, SAXException, ParserConfigurationException {\n StringBuilder builder = new StringBuilder();\n builder.append( uri );\n builder.append( \"&term=\" );\n ... | {
"created": null,
"fork": null,
"fork_count": 1,
"is_fork": false,
"language": "Java",
"license": "licensed",
"repo_id": 52478731,
"size": 460145,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/PavlidisLab/Gemma"
} |
52478731_75 | {
"fields": [
{
"declarator": "experimentalFactorService",
"modifier": "@Autowired",
"original_string": "@Autowired\n ExperimentalFactorService experimentalFactorService;",
"type": "ExperimentalFactorService",
"var_name": "experimentalFactorService"
}
],
"file": "gemma-cor... | {
"body": "@Test\n public void testOrderByExperimentalDesignB() {\n\n BioAssayDimension bad = BioAssayDimension.Factory.newInstance();\n\n /*\n * Five factors. Factor4 is a measurmeent.\n */\n\n Collection<ExperimentalFactor> factors = new HashSet<>();\n for ( int i = 0;... | {
"fields": [
{
"declarator": "log = LogFactory.getLog( ExpressionDataMatrixColumnSort.class.getName() )",
"modifier": "private static final",
"original_string": "private static final Log log = LogFactory.getLog( ExpressionDataMatrixColumnSort.class.getName() );",
"type": "Log",
"var... | {
"body": "public static <R> DoubleMatrix<R, BioAssay> orderByExperimentalDesign( DoubleMatrix<R, BioAssay> mat ) {\n\n List<BioAssay> bioAssays = mat.getColNames();\n\n List<BioMaterial> start = new ArrayList<>();\n Map<BioMaterial, BioAssay> bm2ba = new HashMap<>();\n for ( BioAssay bioA... | {
"created": null,
"fork": null,
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"language": "Java",
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"repo_id": 52478731,
"size": 460145,
"stargazer_count": 6,
"stars": null,
"updates": null,
"url": "https://github.com/PavlidisLab/Gemma"
} |
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