id stringlengths 36 36 | text stringlengths 1 1.25M |
|---|---|
d9b2b25a-ac22-4e41-8a70-5791a404a7c9 | public Boolean getIncludeExtension() {
return includeExtension;
} |
b5457963-07a8-440c-b901-ef04d68a55c3 | @CreoleParameter(
comment="If all subdirectories should be recursively be used too",
defaultValue="false")
public void setRecurseDirectories(Boolean yesno) {
recurseDirectories = yesno;
} |
f68340b7-c5ee-4113-80b2-925826b13d14 | public Boolean getRecurseDirectories() {
return recurseDirectories;
} |
f1e53601-ad3c-4078-a87c-b3ad70ae6512 | @CreoleParameter(
comment="A regular expression pattern that must match for the file to be used",
defaultValue="")
public void setFilenamePattern(String pattern) {
filenamePattern = pattern;
} |
b52d5cd1-5ee5-4842-b393-7c31b526f45a | public String getFilenamePattern() {
return filenamePattern;
} |
0f510931-29b8-4175-8483-6e20d8562944 | public List<String> soso() {
return fileNames;
} |
b466bd3b-1b2b-43a4-a7ce-adf43f4a4dbc | public Resource init() throws ResourceInstantiationException {
if(getDirectoryURL() == null) {
throw new ResourceInstantiationException("directoryURL must not be empty");
}
File theDir = gate.util.Files.fileFromURL(getDirectoryURL());
try {
theDir = theDir.getCanonicalFile();
} catch (IO... |
519108d0-b99f-4175-8c98-3a6700644851 | private String getRelativePathName(File theDir, File theFile) {
String dirName = theDir.getAbsolutePath();
String fileName = theFile.getAbsolutePath();
return fileName.substring(dirName.length()+1);
} |
b51176f0-7134-4f5d-8555-ad987055b80f | @Override
public int getTotalNumberOfDocuments() {
return fileNames.size();
} |
6d7ea66c-d366-452a-8642-ab11428fc52e | public void open() {
fileNamesIterator = fileNames.iterator();
} |
204b1c61-56ec-4aa1-a1b0-4207eae09b71 | public void close() {
fileNamesIterator = null;
} |
7ae93299-769d-419f-a8af-30b7c2d3da89 | public boolean hasNext() {
return fileNamesIterator.hasNext();
} |
5fef5c8d-9970-4b6f-9ed7-75592405aa3d | public Document next() {
Document doc = null;
if(!fileNamesIterator.hasNext()) {
return null;
}
String fileName = fileNamesIterator.next();
// TODO: get the document and return it
// if there is an error and we do not fail on conversion, return null
try {
// TODO: create the full... |
8f003b00-b11f-44b1-afdf-d4d127e56af4 | public String getStringFromFile(String filename)
throws FileNotFoundException, IOException {
String content = "";
// if input compression is allowed, check if the name ends in .gz
// if yes, read the file using a decompressing stream, otherwise using
// a normal stream
InputStream isorig = new F... |
1e4c1374-e846-45fd-aa35-a42b11c614ae | @Option(shortName="l",longName="listfrom",pattern="^stdin|file|dir|dircorpus$",defaultValue="dir",description="Where to get the list of filenames from: stdin, file, dir, dircorpus (default: dir)")
String getListFrom(); |
a98c73d2-f138-42dc-b1fc-d3c9e3324833 | boolean isListFrom(); |
25f55cc1-38f1-406c-ab15-69470d4749a4 | @Option(longName="indir",defaultValue="",description="Directory that contains the files to process (default: current)")
String getInDir(); |
4769209e-7022-4f11-bf5c-808442f549b3 | boolean isInDir(); |
5c1eaade-edfd-425e-9327-c242886c7793 | @Option(longName="outdir",defaultValue="",description="Directory where processed files are strored (default: same es indir)")
String getOutDir(); |
3d1502fb-b6db-4be4-9bbe-63db34c154aa | boolean isOutDir(); |
ee839dfb-4352-4952-a235-924aae05205e | @Option(shortName="c",longName="controller",description="Name of the controller/pipeline file")
String getController(); |
9c4d2a19-790b-403c-987a-b26e116d1650 | @Option(longName="saveas",defaultValue="xml",description="Save as xml, xmlorig, xmlfull, string (default: xml, ignored for dircorpus)")
String getSaveAs(); |
bf8c1cdd-96eb-44f2-8c30-1f3fea5a1707 | boolean isSaveAs(); |
3cb0a6f7-a666-4c0b-9d21-df953cbec166 | @Option(longName="saveto",defaultValue="file",description="Save to file, none, stdout (default: file, ignored for dircorpus)")
String getSaveTo(); |
c355caf9-7c83-4f17-9f24-636dec4e8348 | boolean isSaveTo(); |
f59737b9-3fc6-4582-8675-b1430de58665 | @Option(longName="replext",description="Replace existing extension with this (include dot, ignored for dircorpus)")
String getReplExt(); |
85d574e5-7833-40a0-a6e2-cc7826101369 | boolean isReplExt(); |
f8d213a6-15e1-49b0-b487-135e20303efd | @Option(longName="pluginsdir",description="The directory where the needed plugins are located")
String getPluginsDir(); |
d3325d4f-d436-4a7a-9ecb-b06a1150846a | boolean isPluginsDir(); |
d0841faf-ec2d-4301-b2b2-52c28f278b0f | @Option(longName="compressout",description="If output should be compressed using gzip")
boolean isCompressOut(); |
357b8bef-4bbe-468e-acff-6313da758765 | @Option(longName="allowcompressedin",description="If specified, .gz indicates compressed files")
boolean isAllowCompressedIn(); |
d1f83b88-f99a-40b9-8c81-c1dabed9f1fc | @Option(longName="namepattern",description="Regular expression pattern that must match a name for it to be used")
String getNamePattern(); |
9e8825be-be9b-43c7-bd8e-47b578005867 | boolean isNamePattern(); |
3082d151-6d5f-47ee-bed7-3333fbe4425a | @Option(longName="outputEncoding",description="Encoding to use for the output if string, default is system encoding, XML is always encoded as UTF-8")
String getOutputEncoding(); |
74b57f0a-ca77-4222-bca1-c8af50aba8d8 | boolean isOutputEncoding(); |
eb6074f1-67be-4fd7-85c5-8c722dc1003c | @Option(longName="inputEncoding",description="Encoding to use for the input, default is system encoding for non XML files, XML is always read as UTF-8")
String getInputEncoding(); |
4aabefdf-4995-4552-bea5-36bb04dcaa4c | boolean isInputEncoding(); |
8781a0c7-d971-4203-a55b-25da4fad395a | @Option(longName="nrthreads",defaultValue="1",description="Number of threads to use. Use with care!")
String getNrThreads(); |
e73c0c5d-7063-45ce-b3d0-b7486db9b0d2 | @Option(longName="log4jconfig",description="Path to a log4j configuration properties file")
String getLog4jConfig(); |
d7f52ba4-c970-4b7e-a204-b16197858a92 | boolean isLog4jConfig(); |
8b144b36-8331-4ade-8e13-8ae2d8c17b7a | @Option(shortName="d")
boolean isDebug(); |
282f16cd-8ff3-4a14-8d6a-dbaed73ff961 | @Option(helpRequest=true,description="Display help and exit")
boolean isHelp(); |
58e42904-ce06-4f43-8d9a-f5ce251ddd93 | @Unparsed
List<String> getArgs(); |
5e116145-b6d5-4575-9355-7b21140a4be8 | boolean isArgs(); |
a65574f2-4cc4-4b3f-9eba-d9eb40d38d5f | public static void main( String[] args ) throws MalformedURLException, GateException {
try {
options =
CliFactory.parseArguments(BatchProcessingOptions.class, args);
} catch(ArgumentValidationException e) {
System.err.println("Error parsing options: "+e);
System.e... |
9a9ea5e8-38ee-482a-8492-a2c8494f69e9 | public static void runUsingGetters (DocumentGetter getter) {
int optionNrThreads = Integer.parseInt(options.getNrThreads());
if(mDocumentGetter == null) {
System.err.println("Could not initialize the file getter for filefrom "+optionListFrom+"\n");
System.exit(2);
}
runners = new... |
96a43733-3077-41e9-a27f-67e9f0025db1 | private static void shutdownAndAwaitTermination(ExecutorService pool) {
System.err.println("Requesting shutdown");
pool.shutdown(); // Disable new tasks from being submitted
try {
// Wait half an hour for all tasks to complete
if (!pool.awaitTermination(60 * 30, TimeUnit.SECONDS)) {
Syst... |
c4d99097-5197-44f2-9168-b32381e8fcc6 | protected static PipelineRunner getRunner()
throws InterruptedException {
PipelineRunner runner = runners.take();
System.err.println("Getting running nr "+runner.getNr()+ " size is now "+runners.size());
return runner;
} |
66b82306-1fca-4270-8303-c918c2985313 | protected static void putRunner(PipelineRunner runner) throws InterruptedException {
System.err.println("Putting back running nr "+runner.getNr());
runners.put(runner);
} |
6d5b3b29-323e-49cd-812e-f477cac8050e | public static void runUsingGettersOld (DocumentGetter getter) {
if(mDocumentGetter == null) {
System.err.println("Could not initialize the file getter for filefrom "+optionListFrom+"\n");
System.exit(2);
}
// TODO: make this multithreaded .
// Maybe by doing this: if n threads a... |
46a9a193-592a-4772-92b9-0c0b375b7b7c | public static void runUsingCorpus (Corpus corpus) throws ExecutionException {
// load the processing pipeline description from the file
// specified
File controllerFile = new File(optionController);
gate.CorpusController controller = null;
try {
controller =
(gate.CorpusC... |
a5fad7c0-5cfd-4acc-b026-4499cb9a049e | static public void saveStringToFile(
String string, OutputStream out, BatchProcessingOptions options) throws UnsupportedEncodingException, IOException {
// convert the string to a byte buffer using the encoding specified
// as an option or the default encoding if the output format is string,
// ot... |
afacfcc2-d644-4599-a4b6-18e45c93dc04 | static public String getStringFromFile(String filename, String indir, BatchProcessingOptions options) throws FileNotFoundException, IOException {
String content = "";
// if input compression is allowed, check if the name ends in .gz
// if yes, read the file using a decompressing stream, otherwise using
... |
9cb7aaed-d3f2-41ee-9324-2d5725dbff5a | static public String getDefaultEncoding() {
return Charset.defaultCharset().toString();
} |
c926b68d-ce53-4f47-9504-e4cbc35f22a2 | static public Document newDocument(String content, String fileName)
throws ResourceInstantiationException {
return Factory.newDocument(content);
} |
b198dc9d-4662-428b-a7b1-aefac4db6749 | public abstract gate.Document getNextDocument(); |
3c9d9d57-e3e7-414f-b7dc-4f8493f8491b | public boolean haveNext() {
return mHaveNext;
} |
a6250cff-a2fa-498f-9f95-1eb00163ccdf | public abstract void init(); |
d4f18f74-562d-4d54-8298-07919e2585ee | public abstract void close(); |
24579425-42d4-4486-a047-21878c1faca1 | public String getFileName() {
return null;
} |
31989c37-423a-4bcd-9efe-a78ac6f4d8ae | public void setDebug(Boolean onOff) {
mDebug = onOff;
} |
b6e288cf-a6b0-4bf3-a40f-2a644b0e221d | public DocumentGetterFileNamesFromDir(BatchProcessingOptions options, String filepath) {
mOptions = options;
mIndirName = filepath;
init();
} |
8f60a1d5-9c27-400d-959c-e72ac5b39130 | public void setIndir(String inDirName) {
mIndirName = inDirName;
System.err.println("Set input directory to: "+mIndirName+"\n");
} |
98b68d47-5b33-4a1a-bf97-8964477545a5 | public void init() {
File theDir = new File(mIndirName);
System.err.println("Getting filenames in directory "+theDir.toString());
if(!theDir.isDirectory()) {
System.err.println("Not a directory: "+theDir.getAbsolutePath());
System.exit(2);
}
String[] filenames = theDir.list();
for(St... |
92ba021a-cf6b-433a-b59a-78b90788bf14 | public void setDebug(Boolean onOff) {
mDebug = onOff;
} |
8dbddf2a-933e-4733-a261-da694dca7549 | public String getFileName() {
return mFileName;
} |
f415a445-bdc3-4e73-bfcc-342b1e27c073 | public gate.Document getNextDocument() {
gate.Document d = null;
String fileName = null;
if(!fileNamesIterator.hasNext()) {
mHaveNext = false;
mFileName = null;
return null;
} else {
mFileName = fileNamesIterator.next();
}
fileName = mFileName;
if(mDebug.booleanValue... |
fae46821-4974-4517-a864-0edd46dd2e1f | public void close() {} |
f26fc628-29cb-4a38-bf80-c0d6f842919d | public DocumentGetterFileNamesFromStdin(BatchProcessingOptions options) {
mOptions = options;
} |
d4a5201f-56db-4c2a-a99f-e8ec37360852 | public void setIndir(String inDirName) {
mIndirName = inDirName;
System.err.println("Set input directory to: "+mIndirName+"\n");
} |
7eaec7fb-6ae4-448f-99ee-a5f82d1dd2f1 | public void init() {
mReader = new BufferedReader(new InputStreamReader(System.in));
} |
ab1e5da1-d308-4bdf-b928-b232be178eaf | public void setDebug(Boolean onOff) {
mDebug = onOff;
} |
311796da-f74c-486e-9f39-b8cc53fb3d12 | public String getFileName() {
return mFileName;
} |
c0fbfaf2-d909-431d-8402-1918e1260237 | public gate.Document getNextDocument() {
gate.Document d = null;
String fileName = null;
try {
fileName = mReader.readLine();
while(fileName != null && !isAcceptableFileName(fileName)) {
fileName = mReader.readLine();
}
} catch (IOException ioe) {
System.err.println("IO ... |
418e12e3-73c1-48b8-9a1a-608131982af0 | public void close() {
// close mReader here?
} |
1417e98d-50b3-40ce-853f-edeed882fb22 | public void setDocument(Document doc, String filename) {
mDocument = doc;
mFileName = filename;
} |
47c30fec-b55f-4cbe-9e6e-c609902aba9a | public int getNr() {
return mThreadNr;
} |
302a6029-b0a3-4f02-a91a-aca86779a7fe | private PipelineRunner() {} |
5b868cd8-3e54-43bb-9a8e-fff786fdc93e | public PipelineRunner(BatchProcessingOptions options, int nr)
throws ResourceInstantiationException {
mOptions = options;
mThreadNr = nr;
String filename = options.getController();
File controllerFile = new File(filename);
try {
mController =
(gate.CorpusController)gate.u... |
7c82a6e7-76fc-4923-96eb-356d794c8843 | public void run() {
if(mOptions.isDebug()) {
System.err.println("Processing document "+mDocument.getName()+" in thread "+mThreadNr+" using "+mController.getName()+"\n");
}
mCorpus.add(mDocument);
try {
mController.execute();
System.err.println("Document "+mDocument.getName()+" pro... |
b05ba5e4-e7ae-42af-bbe5-409e84d154f4 | protected void saveStringToFile(
String string, OutputStream out) throws UnsupportedEncodingException, IOException {
// convert the string to a byte buffer using the encoding specified
// as an option or the default encoding if the output format is string,
// otherwise use UTF-8
String outputE... |
722497dc-cd0c-471d-85f7-0ff2c748957e | protected Document newDocumentFromFile(String fileName) {
Document d = null;
mFileName = fileName;
if(mOptions.isAllowCompressedIn()) {
mFileName = mFileName.replaceAll(".gz$", "");
}
try {
String content = Utils.getStringFromFile(fileName, mIndirName, mOptions);
d = Utils.newDocum... |
d9586162-5346-48ef-940b-7ab9a03c2d9a | protected boolean isAcceptableFileName(String name) {
boolean acceptable = true;
if(mOptions.isNamePattern()) {
// compile the pattern only once
if(mPattern == null) {
mPattern = Pattern.compile(mOptions.getNamePattern());
}
acceptable = mPattern.matcher(name).matches();
}
... |
3d458dff-6da8-411c-9753-38e405c7bb91 | public DocumentGetterFileNamesFromFile(BatchProcessingOptions options, String filepath) {
mOptions = options;
mFileName = filepath;
init();
} |
17af74e2-75e2-40e3-8af9-13f4c6616e8a | public void setIndir(String inDirName) {
mIndirName = inDirName;
System.err.println("Set input directory to: "+mIndirName+"\n");
} |
15adb398-123e-4334-ad34-59b8dc17ed7f | public void init() {
File filenamesFile = new File(mFileName);
System.err.println("Reading filenames from file "+filenamesFile.toString());
FileReader inFileStream = null;
try {
inFileStream = new FileReader(filenamesFile);
} catch(IOException ioe) {
System.err.println("IO error trying ... |
f8384a0e-64fd-45c4-9187-79e2c7324f35 | public void setDebug(Boolean onOff) {
mDebug = onOff;
} |
94d21e13-de32-40e3-99c8-e708d550a415 | public String getFileName() {
return mFileName;
} |
5158c7ff-d8f7-4da1-9749-c84bd8460312 | public gate.Document getNextDocument() {
gate.Document d = null;
String fileName = null;
try {
fileName = mInstream.readLine();
while(fileName != null && !isAcceptableFileName(fileName)) {
fileName = mInstream.readLine();
}
} catch (IOException ioe) {
System.err.println... |
8773ba36-1326-4907-a4ca-f91444b3071e | public void close() {
try {
mInstream.close();
} catch (IOException ex) {
throw new GateRuntimeException("Error when closing file: "+ex);
}
} |
f5b9394d-e28b-434f-bb64-27485c1d8b81 | public abstract Document next(); |
2a7f86b2-2fb3-4c61-beff-68a8cd7afa61 | public abstract boolean hasNext(); |
fea9ce72-1528-4fa8-b96b-a7aff71a2d30 | public abstract Resource init() throws ResourceInstantiationException; |
c6e422f2-8272-4ee0-bc41-b3f2acc6e8d2 | public abstract void open(); |
90cb22e5-6480-4c0b-a1ff-ae375958a80b | public abstract void close(); |
015ce07c-def1-4532-8302-cb8bf40e5bd1 | public int getTotalNumberOfDocuments() { return -1; } |
491aa0f8-528d-4a9b-b186-357c6e2e1979 | public void remove() {
throw new MethodNotImplementedException("Remove not implemented for DocSource");
} |
8400b150-7a7c-428d-a79c-8746e0e0df3d | @CreoleParameter(
comment="Directory that should contain the random index data",
defaultValue = "true")
public void setFailOnConversionError(Boolean yesno) {
failOnConversionError = yesno;
} |
3a3f8063-0e22-4f2a-98c3-d1ee0660c0b6 | public Boolean getFailOnConversionError() {
return failOnConversionError;
} |
51b6c315-b0cb-4042-94ed-6d3a228a7b96 | public void init(final FilterConfig config) throws ServletException {
// Empty method
} |
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