id stringlengths 36 36 | text stringlengths 1 1.25M |
|---|---|
2bf99c5b-ad74-48a1-a7fe-4f509d8ecc36 | public verificationException() {super();} |
425cd825-70b2-4a51-b92c-0ebb4e2823e3 | public verificationException(String message){super(message);} |
d6192029-9549-404c-aa03-f82573466c45 | public static void main (String [] args) throws SQLException
{
// Unique table names. Either the user supplies a unique identifier as a command line argument, or the program makes one up.
String tableName = "";
int sqlCode=0; // Variable to hold SQLCODE
String sqlState="00000"; // Var... |
cc0134ae-a3c2-498f-bc02-9331fdf950a4 | public Venue(int venueID, Connection con) {
this.venueID = venueID;
this.con = con;
} |
3c33c7d3-71b3-48cb-abe9-8a92b6e38068 | public boolean isExist() throws SQLException{
PreparedStatement pState = con.prepareStatement("SELECT venue_id FROM venue where venue_id=?");
pState.setInt(1, this.venueID);
ResultSet rs = pState.executeQuery();
while (rs.next()) {
if (rs.getInt(1) == this.venueID) {
... |
093aaf72-7205-4383-9185-8450fe0cf826 | public Account(String email, Connection con)
{
this.email = email;
this.con = con;
this.exist = false;
this.attendee = false;
this.organizer = false;
} |
aa01120d-7c04-4baf-b400-c503f49193d6 | public void createNewAccount(String pw) throws SQLException
{
try {
PreparedStatement pState = con.prepareStatement("INSERT INTO account VALUES(?, ?)");
pState.setString(1,this.email);
pState.setString(2,pw);
pState.execute();
} catch (SQLException e) ... |
37dc7ebd-e9fa-4bd4-a303-8740876cf63f | public void createAttendeeAccount(String fname, String lname, String phone, String home, String billing) throws SQLException
{
try {
PreparedStatement pState = con.prepareStatement("INSERT INTO attendee VALUES(?, ?, ?, ?, ?, ?)");
pState.setString(1,this.email);
pState.se... |
c4bcadf3-9368-41a2-9025-43240c0500d9 | public void createOrganizerAccount(String name, String logo, String about, String website) throws SQLException
{
try {
PreparedStatement pState = con.prepareStatement("INSERT INTO organizer VALUES(?, ?, ?, ?, ?)");
pState.setString(1,this.email);
pState.setString(2,name);... |
6d8946cf-be97-4b59-b34c-d26412cc65ba | public void checkAccount() throws SQLException
{
try {
checkExist();
checkAttendee();
checkOrganizer();
} catch (SQLException e) {
System.out.println("Error checking account");
throw e;
}
} |
85d1fb82-a664-420e-8e18-4d1c66026943 | private void checkExist() throws SQLException{
PreparedStatement pState = con.prepareStatement("SELECT email FROM account where email=?");
pState.setString(1,this.email);
ResultSet rs = pState.executeQuery();
while (rs.next()) {
exist = (rs.getString(1).equals(this.email));
... |
01cba367-0823-410a-983e-34d98f8c5e57 | private void checkAttendee() throws SQLException{
PreparedStatement pState = con.prepareStatement("SELECT email FROM attendee where email=?");
pState.setString(1,this.email);
ResultSet rs = pState.executeQuery();
while (rs.next()) {
attendee = (rs.getString(1).equals(this.ema... |
af7430e0-324a-4fff-bb75-6e89cc0a0cd0 | private void checkOrganizer() throws SQLException{
PreparedStatement pState = con.prepareStatement("SELECT email FROM organizer where email=?");
pState.setString(1,this.email);
ResultSet rs = pState.executeQuery();
while (rs.next()) {
organizer = (rs.getString(1).equals(this.... |
de2fb7c1-06d8-4882-94ed-107bd104ed50 | public void getAttendingEvents() throws SQLException{
this.checkAttendee();
if (!attendee) {
System.out.println("Account is not an Attendee.");
return;
}
try {
PreparedStatement pState = con.prepareStatement("SELECT title FROM ticket t, event e WHERE (... |
fda68e18-4f1f-46f7-a92b-42b7755f236a | public void getCreatedEvents() throws SQLException{
this.checkOrganizer();
if (!organizer) {
System.out.println("Account is not an Organizer.");
return;
}
try {
PreparedStatement pState = con.prepareStatement("SELECT title FROM event WHERE email=?",Res... |
9b8c4da5-b499-483b-ad27-d704086aff8f | public boolean isAuthorized(String password) throws SQLException{
Boolean auth = false;
try {
PreparedStatement pState = con.prepareStatement("SELECT password FROM account WHERE email=?",ResultSet.TYPE_SCROLL_INSENSITIVE,ResultSet.CONCUR_READ_ONLY);
pState.setString(1,this.email)... |
de2151b1-874d-4fd4-adc1-7aa5fd0b05ea | public boolean isOrganizer() {
return organizer;
} |
987ec421-c1ff-46a6-87dc-760d8884f7b4 | public boolean isExist() {
return exist;
} |
f6eca013-6b66-4789-a6a5-2c81ec61f5de | public boolean isAttendee() {
return attendee;
} |
9b54d653-e9b4-4ca9-83e7-ccb15896fb9f | public Transaction(Connection con,int ticketID, double fee) {
this.con = con;
this.ticketID = ticketID;
this.processingFee = fee;
} |
89f6a724-a022-4c1b-82c6-5a40c098a423 | public void create(String email) throws SQLException{
try {
//Need to handle big decimal.
pState = con.prepareStatement("SELECT price from ticket WHERE ticket_ID=?");
pState.setInt(1, this.ticketID);
BigDecimal price = BigDecimal.ZERO;
ResultSet rs = ... |
bfa06aab-493d-4bc5-a571-1150b0a42fc0 | private void generateTransactionID() throws SQLException{
try {
pState=con.prepareStatement("SELECT MAX(Transaction_ID) from transaction");
ResultSet rs = pState.executeQuery();
int id = 0;
while (rs.next()) {
id = rs.getInt(1);
}
... |
5ff780f6-2114-40a7-9150-7c0d10eac80f | public Ticket (int ticket, String email, Connection con)
{
this.ticket = ticket;
this.email = email;
this.con = con;
} |
9edb1289-8394-4097-8242-04dfc1bd73e5 | public void buyTicket() throws SQLException
{
try
{
/*state = con.createStatement();
String query = "UPDATE ticket SET email=" + email +" WHERE ticket_id=" + ticket;
state.executeUpdate(query);*/
state = con.prepareStatement("UPDATE ticket SET email = ? WHERE ticket_id = ?");
state.setString(1, ... |
4ae3b4d5-c493-4c18-856b-78fb4367bcfb | public Event(Connection con) {
this.con = con;
} |
b523d1a6-5596-4818-989a-ed68452b40b5 | public void generateEventID() throws SQLException{
// Get latest Event ID
try {
pState = con.prepareStatement("SELECT Max(event_id) from event");
String newestEventIDQuery = "SELECT Max(event_id) from event";
ResultSet rs = pState.executeQuery();
int id... |
7ed5c608-ad71-4648-8b6e-49fdaa357192 | public void insertEventData(int venueID, String organizerEmail, String title, String logo, String desc, String cat, java.util.Date sDate, java.util.Date eDate) throws SQLException{
try {
pState = con.prepareStatement("INSERT INTO event VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?)");
pState.setInt(... |
a9f367bc-c8ea-4ba2-9b70-912f64810660 | public void getEvent() {
} |
1269d75f-a33c-4091-b2be-d74898bfd586 | public MenuLeaf(){
this('A',"Description");
} |
f9a4dbd8-5c41-4b59-ad17-1511391ca047 | public MenuLeaf(char label, String description)
{
this.label = label;
this.description = description;
} |
0ebad95d-d71e-4cd1-b777-3e5f76708c60 | public void display() {
System.out.println(label + " - " + description);
} |
f5df95ef-041f-4934-9e70-09dd8710e920 | public char getLabel() {
return label;
} |
daa5b167-8d35-4714-9137-2faa47ef006a | public void setLabel(char Label) {
this.label = label;
} |
1cc8b7aa-ba5d-4e1d-bfb5-11bb21f4aeb9 | public String getDescription() {
return description;
} |
52344ae5-d888-4275-a05b-093dd7174bc6 | public void setDescription(String desc) {
this.description = desc;
} |
11713f36-0e02-4afb-a0c8-1194b06f38f6 | public boolean isNode() {
return false;
} |
f30ecf11-48f0-407a-aada-731d08229ac9 | public void display(); |
80e26241-11e9-41f8-8642-2ed98f281d07 | public char getLabel(); |
bdf7b36e-7913-4787-b7fc-15935252cedb | public void setLabel(char label); |
15cc5f1f-6f99-4a05-a50b-d096f512429c | public String getDescription(); |
6c424367-2f74-480c-8510-18eda185c2d6 | public void setDescription(String desc); |
22afa0e2-6e22-49bb-a603-ba1e5b8246e9 | public boolean isNode(); |
c43064b6-af9a-48c9-8ca8-8b74f631b1e5 | public MenuNode() {
this('A',"Default","Default prompt");
} |
41df20ca-abae-4f2e-b955-359a0164d7c9 | public MenuNode(String title, String Prompt) {
this('A',title,Prompt);
} |
a8161c8f-ffa9-42f6-9e43-4e1bda991da5 | public MenuNode(char label, String title, String prompt) {
this.setTitle(title);
this.setPrompt(prompt);
this.selectedItem = new MenuLeaf();
selectedItem.setLabel(label);
selectedItem.setDescription(title);
this.tree = new ArrayList<MenuItem>();
} |
e7c38541-5da9-4357-8d5f-8c27bad41640 | public void display() {
selectedItem.display();
} |
dbc3013e-aea3-4767-8968-7c055ec74552 | private void displayPrompt() {
System.out.println("");
System.out.print(this.prompt);
} |
2a60717d-ac2c-409c-8df9-38043d0b650c | private void displayMenu() {
System.out.println(this.title);
for (MenuItem item:tree) {
item.display();
}
displayPrompt();
} |
63b56a69-2845-45eb-8c19-00cbd6e1b317 | private char readChoice() throws IOException {
BufferedReader br = new BufferedReader(new InputStreamReader(System.in));
String choice = br.readLine();
return choice.charAt(0);
} |
a1f0a3c2-aeb5-4e07-bbe8-7c6c89afaf54 | public void addMenuItem(MenuItem item) {
tree.add(item);
} |
4c207a93-cc94-44eb-8cdd-4ff1a65f6c83 | public MenuItem askUser() {
MenuItem chosen = null;
displayMenu();
while (chosen == null) {
char choice = 'Z';
try {
choice = readChoice();
} catch (IOException e) {
System.out.println("Error reading choice");
}
... |
4a223cbc-b309-454a-99c1-274d0acf94d8 | public char getLabel() {
return selectedItem.getLabel();
} |
2b1e3705-150c-40a7-924f-2e453b8938a7 | public void setLabel(char label) {
selectedItem.setLabel(label);
} |
20f55c1b-6046-4421-b501-d143b632384b | public String getDescription() {
return selectedItem.getDescription();
} |
dd4aee21-9954-4346-9257-f74eb61f62db | public void setDescription(String desc) {
selectedItem.setDescription(desc);
} |
64ca2a20-a88f-4799-a865-c41044994c66 | public boolean isNode() {
return true;
} |
8a373a0d-def4-49b8-9015-1f2eac9385da | public String getTitle() {
return title;
} |
4debc1cf-6d9d-43ae-908a-b93f95c11bb3 | public void setTitle(String title) {
this.title = title;
} |
e6029184-01a3-4950-8950-f6387b92e03a | public String getPrompt() {
return prompt;
} |
e9ecdea1-610f-45e7-b28d-4bdf11a40cb0 | public void setPrompt(String prompt) {
this.prompt = prompt;
} |
f60af753-35d0-45bc-a3f3-53c7537c9cf5 | public FragmentReadEntry(SAMRecord samRecord) {
this.setSamRecord(samRecord);
} |
41d473c0-9c73-4ee0-bde3-deaea09adc2e | public SAMRecord getSamRecord() {
return super.getSamRecord();
} |
3d42b706-4dd0-4e49-8c35-e83210b79cd5 | public void setSamRecord(SAMRecord samRecord) {
super.setSamRecord(samRecord);
} |
f7f3ada8-509c-4a70-b43f-4607dc6f0fd6 | public static int getFragmentReadCount() {
return fragmentReadCount;
} |
3c13f904-4b14-4a70-b757-e1a333e2f79b | public static void setFragmentReadCount(int fragmentReadCount) {
FragmentReadEntry.fragmentReadCount = fragmentReadCount;
} |
77a108b7-7a5e-40ab-909d-34ddc18fd2e6 | public static long getReadUnmappedCount() {
return readUnmappedCount;
} |
db08e62e-a9d0-4c60-8665-cab2ab9eb1e8 | public static void setReadUnmappedCount(long readUnmappedCount) {
FragmentReadEntry.readUnmappedCount = readUnmappedCount;
} |
9a45ca08-5c54-4c10-a9c4-94f0fec3e6ad | public ArrayList<String> getCigarTokens() {
return cigarTokens;
} |
b35bfc8a-c924-47e3-81e4-e8d9d877a6b0 | public void setCigarTokens(ArrayList<String> cigarTokens) {
this.cigarTokens = cigarTokens;
} |
72dd096e-1839-4f58-91c1-dcb8e97bbd9a | public static int[] getEffLengthCounterArray() {
return effLengthCounterArray;
} |
d1421a7e-3deb-4a83-b4b4-b516fc4dd6f5 | public static void setEffLengthCounterArray(int[] effLengthCounterArray) {
FragmentReadEntry.effLengthCounterArray = effLengthCounterArray;
} |
3c40070d-736b-4c46-a11d-db11bf05668b | public static int[] getRawLengthCounterArray() {
return rawLengthCounterArray;
} |
2f1723ca-8f43-4888-855e-362352053150 | public static void setRawLengthCounterArray(int[] rawLengthCounterArray) {
FragmentReadEntry.rawLengthCounterArray = rawLengthCounterArray;
} |
1aa92be6-4bf1-47bd-bd8e-e4174db108a5 | public static int getOnTargetReadCount() {
return onTargetReadCount;
} |
cd95001f-af46-41f2-8a85-8982ebeda8d0 | public static void setOnTargetReadCount(int onTargetReadCount) {
FragmentReadEntry.onTargetReadCount = onTargetReadCount;
} |
e0223125-4bde-4e0e-a983-38e93777a941 | public static int getOffTargetReadCount() {
return offTargetReadCount;
} |
8c194c0c-38ee-43ff-bef3-d916069b6a1a | public static void setOffTargetReadCount(int offTargetReadCount) {
FragmentReadEntry.offTargetReadCount = offTargetReadCount;
} |
2adb18b1-00b4-4eed-a0a7-4261dda88a1e | @Override
public String toString() {
return String.format("%s", getSamRecord().getReadName());
} |
80f2678f-3fa7-41fd-847e-2e81f0cd9f4a | @Override
public void analyzeCoverage() {
// in this analysis, skip and count the reads which are flagged as
// unmapped and return for getting next read
if (this.getSamRecord().getReadUnmappedFlag()) {
readUnmappedCount++;
return;
} else {
// get the offset for the absolute localization
long offse... |
90a19cb4-7740-459b-ac92-650116cd4a11 | @Override
public void analyseQuality() {
// CigarString is splitted using StringTokenizer
String cigarString = getSamRecord().getCigarString();
StringTokenizer st = new StringTokenizer(cigarString, "MIDNSHPX", true);
while (st.hasMoreTokens()) {
cigarTokens.add(st.nextToken());
}
int posInRead = 0;
i... |
f90b4f97-83cc-4141-8db7-ab81c607edae | public void printUsefulDebuggingData() {
Cigar cigar = getSamRecord().getCigar();
System.out
.printf("%n%s%n",
"=====================================================================");
// ReadName
System.out.printf("%-10s%-40s", "Readname: ", getSamRecord()
.getReadName());
// Koordinates
Syst... |
7e68a3d9-f0e7-406a-ac2b-145c21079baa | public static long getEndTime() {
return endTime;
} |
f595b791-0b22-4f8b-8fef-f62ec85bbbbe | public static void setEndTime(long endTime) {
FragmentReadEntry.endTime = endTime;
} |
491efa07-8285-451b-aa2c-1c52a90b792d | public static long getStartTime() {
return startTime;
} |
801c9fc1-1ab9-49f2-878a-a30e6114e32b | public static void setStartTime(long startTime) {
FragmentReadEntry.startTime = startTime;
} |
253265e1-810a-4826-b440-a969186f1a23 | ChromosomeOffset(short num, String name, long offset) {
this.num = num;
this.offset = offset;
this.name = name;
} |
1aa9e612-38d7-472c-82af-d42e8c4babd6 | public long getOffset() {
return this.offset;
} |
574a7d0c-20b7-4ea5-b4f0-e0357a800ead | public short getChromosomeNumber() {
return this.num;
} |
ca88ec34-6973-4515-ae98-b2146732e85a | public String getChromosomeName() {
return this.name;
} |
15952b12-e7d0-4214-afdd-c643ead64e57 | public static ChromosomeOffset getChromosomeOffsetbyNumber(short num){
return num_to_offset.get(num);
} |
74f8a8d7-1ef0-4e4b-bdb1-27b69851d401 | public static short chromosomeNumber(String name) {
name = name.toLowerCase();
if(name_to_offset.containsKey(name)){
return name_to_offset.get(name).num;
} else if(name.startsWith("chr")){
return num_to_offset.get(Short.parseShort(name.substring(3))).num;
} else if (! name.startsWith("chr")) {
return ... |
3bfe8168-054a-49af-bec1-dc0ea3ea71a9 | public static long offset(short i) {
return num_to_offset.get(i).offset;
} |
0cccc3af-0c44-44ac-aaa1-f9cc27e00937 | public PairedReadEntry(SAMRecord samRecord) {
super(samRecord);
// TODO Auto-generated constructor stub
} |
972f5689-fa26-48af-9f49-f1beeeb11504 | @Override
public SAMRecord getSamRecord() {
// TODO Auto-generated method stub
return super.getSamRecord();
} |
a66b0abf-21ce-47dd-9d8b-f820123a9d86 | @Override
public void setSamRecord(SAMRecord samRecord) {
// TODO Auto-generated method stub
super.setSamRecord(samRecord);
} |
1a629217-42c3-4b2a-9670-19097118331e | public static long getReadMateUnmappedCount() {
return readMateUnmappedCount;
} |
9ad82d45-a256-42bd-97ce-864c58fb5294 | public static void setReadMateUnmappedCount(long readMateUnmappedCount) {
PairedReadEntry.readMateUnmappedCount = readMateUnmappedCount;
} |
64773521-d8f7-4f36-8de7-2de5b75d6612 | public static long getReadMateSplittedChromosome() {
return readMateSplittedChromosome;
} |
722df487-296f-4b54-b209-c32f09ef46ba | public static void setReadMateSplittedChromosome(long readMateSplittedChromosome) {
PairedReadEntry.readMateSplittedChromosome = readMateSplittedChromosome;
} |
e1f1100d-efa3-48f3-984d-addc3e555da6 | public static long getBothSameOrientated() {
return bothSameOrientated;
} |
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