id stringlengths 36 36 | text stringlengths 1 1.25M |
|---|---|
8a00b741-b927-422e-b17c-d8c336157aca | public void detectQRS(DetectQRSOptions options) throws IOException,
InterruptedException {
ProcessBuilder pb = createProcessBuilder(options.getCommand());
pb.redirectErrorStream(true);
File baseDirectory = options.getBaseDirectory();
if (baseDirectory != null && baseDirectory.exists()) {
pb... |
af31e606-3703-403d-8a1c-c2b165a78f31 | public String edf2mit(Edf2MitOptions options) throws IOException,
InterruptedException {
List<String> command = options.getCommand();
ProcessBuilder pb = createProcessBuilder(command);
File baseDirectory = options.getBaseDirectory();
if (baseDirectory != null && baseDirectory.exists()) {
pb.... |
ab14e86e-1fed-413e-8931-5a75b75ed709 | public HRV hrv(File edf, String annotator, LocalTime startTime,
LocalTime endTime, String... params) throws Exception {
List<String> cmd = new ArrayList<String>();
cmd.add("get_hrv");
if (params != null && params.length > 0) {
cmd.addAll(Arrays.asList(params));
}
cmd.add(edf.getName());... |
ee94455b-ba69-4c60-8433-68a5e640aef0 | public HRV hrv(File edf, String annotator, String... params) throws Exception {
return hrv(edf, annotator, null, null, params);
} |
58eea4da-bc18-4703-a12c-59ec472e5eeb | public HRV hrv(HRVOptions options) throws Exception {
ProcessBuilder pb = createProcessBuilder(options.getCommand());
pb.redirectErrorStream(true);
File baseDirectory = options.getBaseDirectory();
if (baseDirectory != null && baseDirectory.exists()) {
pb.directory(baseDirectory);
}
Process... |
6f41f916-d6e6-41ad-bdca-db3ca1fa1510 | public boolean isInstalled() throws IOException, InterruptedException {
/**
* Implementation: check if every needed command is available. This is done
* by executing the hash command and looking at the exit code. The exit code
* 0 indicates the command is installed correctly. Assuming every needed
... |
583af35b-d3ca-4d9e-bed7-ff6b185d535d | public void rdsamp(File edf) throws IOException, InterruptedException {
ProcessBuilder pb = createProcessBuilder("rdsamp", edf.getName());
pb.directory(edf.getParentFile());
Process process = pb.start();
process.waitFor();
} |
f0577378-f2d3-4750-a644-98c9d57167f8 | public File rdsamp(RdsampOptions options) throws IOException,
InterruptedException {
ProcessBuilder pb = createProcessBuilder(options.getCommand());
File baseDirectory = options.getBaseDirectory();
pb.directory(baseDirectory);
File outputFile = new File(baseDirectory, options.getOutputName());
... |
6e4897c0-a590-4fdf-9f65-93f5ae49ccc5 | public void sqrs(File testFile) throws IOException, InterruptedException {
ProcessBuilder pb = createProcessBuilder("sqrs", "-r", testFile.getName());
pb.redirectErrorStream(true);
pb.directory(testFile.getParentFile());
Process process = pb.start();
process.waitFor();
InputStream in = process.g... |
392cc5a7-3f7d-41f0-ad18-d8555c558c04 | public void testLocale() throws Exception {
ProcessBuilder pb = createProcessBuilder("locale");
Process process = pb.start();
process.waitFor();
InputStream in = process.getInputStream();
System.out.println(IOUtils.toString(in));
} |
124db10d-aef6-402c-88e0-ec5ebb4229dd | protected ProcessBuilder createProcessBuilder(List<String> command) {
ProcessBuilder pb = new ProcessBuilder(command);
setLocale(pb);
return pb;
} |
580bbde8-d9e0-4352-aa8b-9a2922b5ba79 | protected ProcessBuilder createProcessBuilder(String... command) {
return createProcessBuilder(Arrays.asList(command));
} |
9119f5d2-1d5c-49e7-bbfd-4ef4f7868bb5 | protected int execute(String... command) throws IOException,
InterruptedException {
ProcessBuilder pb = createProcessBuilder(command);
Process process = pb.start();
return process.waitFor();
} |
a4d06c40-8843-434d-92bb-17cf8584b142 | private void setLocale(Map<String, String> env) {
String lang = "en_US.UTF-8";
env.put("LANG", lang);
env.put("LC_COLLATE", lang);
env.put("LC_CTYPE", lang);
env.put("LC_MESSAGES", lang);
env.put("LC_MONETARY", lang);
env.put("LC_NUMERIC", lang);
env.put("LC_TIME", lang);
// env.put(... |
49de656e-50ba-49eb-b94e-66eb8e95782a | private void setLocale(ProcessBuilder pb) {
this.setLocale(pb.environment());
} |
071a4550-124b-4158-b62c-19d3e99ca9eb | public DetectQRSOptions(File record) {
super();
this.command = "sqrs";
this.record = record;
if (record != null) {
this.baseDirectory = record.getParentFile();
}
} |
041fc3a1-c17e-4492-a009-112d4e059946 | public File getBaseDirectory() {
return baseDirectory;
} |
8441f9d7-040c-46fa-8c17-5b0d08826bee | public List<String> getCommand() {
List<String> cmd = new LinkedList<String>();
cmd.add(command);
cmd.add("-r");
cmd.add(record.getName());
if (startTime != null) {
cmd.add("-f");
cmd.add(startTime.toString("HH:mm:ss"));
}
if (endTime != null) {
cmd.add("-t");
cmd.a... |
a1a26f03-9300-4edf-9db7-a7de29fcb2c6 | public LocalTime getEndTime() {
return endTime;
} |
4001bf17-d22d-4706-a1e6-3cec74241559 | public File getRecord() {
return record;
} |
e35ee842-3ef5-40c7-8862-62106e8cf095 | public int getSignal() {
return signal;
} |
047e4c00-3004-475c-b44f-2dd6a16fb667 | public LocalTime getStartTime() {
return startTime;
} |
945269b4-4175-4138-9718-56f0282dc71c | public int getTreshold() {
return treshold;
} |
1ba5f41a-0f1c-4084-b5bf-717f14034208 | public boolean isHighResolutionMode() {
return highResolutionMode;
} |
f0da0994-c839-4b14-9fa2-b1062bcefad2 | public DetectQRSOptions setBaseDirectory(File baseDirectory) {
this.baseDirectory = baseDirectory;
return this;
} |
43affae7-4931-4b15-96d7-a79271ae2699 | public DetectQRSOptions setCommand(String command) {
this.command = command;
return this;
} |
f6799333-2554-4430-acba-d49dc463101e | public DetectQRSOptions setEndTime(LocalTime endTime) {
this.endTime = endTime;
return this;
} |
72dfbe5f-db18-4554-8bd4-f43fb4665627 | public DetectQRSOptions setHighResolutionMode(boolean highResolutionMode) {
this.highResolutionMode = highResolutionMode;
return this;
} |
7e609e08-618a-4e31-9a41-bc092494ef3d | public DetectQRSOptions setSignal(int signal) {
this.signal = signal;
return this;
} |
f43b0bf9-5cd3-473b-a295-9f8c8154ea53 | public DetectQRSOptions setStartTime(LocalTime startTime) {
this.startTime = startTime;
return this;
} |
a189d4a4-7a44-4c7f-9d88-e99a23621301 | public DetectQRSOptions setTreshold(int treshold) {
this.treshold = treshold;
return this;
} |
eb21557e-4673-4cb4-a3d9-13d45ee13b06 | public HRVOptions(File rrFile) {
super();
if (rrFile != null) {
this.file = rrFile.getName();
this.baseDirectory = rrFile.getParentFile();
this.isRR = true;
}
} |
162c639a-50ee-440a-a753-7e6f166befcb | public HRVOptions(File recordFile, String annotation) {
super();
if (recordFile != null) {
this.file = recordFile.getName();
this.baseDirectory = recordFile.getParentFile();
}
this.annotation = annotation;
} |
50abaca8-b043-4632-8edb-004707dbbbe1 | public HRVOptions(String file) {
super();
this.file = file;
this.isRR = true;
} |
77e2b01e-e731-46f5-9c43-f69cb454fb41 | public HRVOptions(String file, String annotation) {
super();
this.file = file;
this.annotation = annotation;
} |
8a5c6608-ff36-4635-9a4c-c18311e8a47c | public String getAnnotation() {
return annotation;
} |
20c3948d-e082-459e-80e0-ec69473e8eea | public File getBaseDirectory() {
return baseDirectory;
} |
3a45d725-388a-4fd7-9e0e-c7022041317c | public List<String> getCommand() {
List<String> cmd = new ArrayList<String>();
cmd.add("get_hrv");
if (outputMsec) {
cmd.add("-M");
}
if (shortTermStats) {
cmd.add("-s");
}
if (StringUtils.isNotBlank(filter)) {
cmd.add("-f " + filter);
}
if (StringUtils.isNotBlank(n... |
000c0531-e564-4437-9716-a0007ae37786 | public LocalTime getEnd() {
return end;
} |
a5eaa894-ffb9-48bb-9739-96a44b2bf687 | public String getFile() {
return file;
} |
87d9404e-3027-4508-8b01-a008ca8e3828 | public double getFilt() {
return filt;
} |
77fe1171-8d85-4e72-9275-f160ac7d35d4 | public double getHi1() {
return hi1;
} |
02fa5c77-dec3-49d8-a725-8c6fa33439c2 | public double getHi2() {
return hi2;
} |
83126a0e-511b-4e07-ac95-ade7ec491e86 | public double getHi3() {
return hi3;
} |
de504070-300a-49ea-b233-c649430e7a29 | public double getHi4() {
return hi4;
} |
14186ad2-a1cb-4308-869a-c500f5cd375a | public double getHwin() {
return hwin;
} |
65781711-cd75-4e90-8fcb-a8d24a331780 | public String getInputTimeFormat() {
return inputTimeFormat;
} |
d5e7dc98-bff6-472a-8de3-6618027ad2d8 | public double getLo1() {
return lo1;
} |
6f074af3-2166-47e1-b852-0d42c5c8a168 | public double getLo2() {
return lo2;
} |
4def5d77-3009-4228-941a-5c855bbd1853 | public double getLo3() {
return lo3;
} |
b33e6bbc-21b7-4d2c-9e85-0646b57b2c43 | public double getLo4() {
return lo4;
} |
803b2743-47cd-40ff-a9df-1e87d2c6fa59 | public String getNnDiff() {
return nnDiff;
} |
cdb54ada-5777-4133-9b7d-b221d82c3f2b | public LocalTime getStart() {
return start;
} |
296b7644-59b8-40de-8ba9-8a3c969ff032 | public boolean isOutputMsec() {
return outputMsec;
} |
9da60aba-6880-4fbd-935e-fa269a1f81a4 | public boolean isRrInMSec() {
return rrInMSec;
} |
288b3531-78bd-4ff0-8b46-f4abd7b3e48d | public boolean isShortTermStats() {
return shortTermStats;
} |
97238d31-377b-4308-97d2-55b7ca916896 | public HRVOptions setAnnotation(String annotation) {
this.annotation = annotation;
return this;
} |
f1f705af-8d17-4039-aa77-85e0be9fd8fa | public HRVOptions setBaseDirectory(File baseDirectory) {
this.baseDirectory = baseDirectory;
return this;
} |
3916140c-924e-470f-8c42-5467204a9fdf | public HRVOptions setEnd(int m, int s) {
setEnd(new LocalTime(0, m, s));
return this;
} |
4e9aff3a-347b-40c4-a58b-0029a7427b9d | public HRVOptions setEnd(LocalTime end) {
this.end = end;
if (this.start == null) {
this.start = new LocalTime(0, 0, 0);
}
return this;
} |
f60a6d12-bbc8-41d3-a63c-299a66090e23 | public HRVOptions setFile(String file) {
this.file = file;
return this;
} |
12646e68-aaca-49f9-ac1d-145d4c8cfaa7 | public HRVOptions setFilt(double filt) {
this.filt = filt;
return this;
} |
1e09d609-9997-4312-82eb-e4bfe05b9e47 | public HRVOptions setFilter(String filter) {
this.filter = filter;
return this;
} |
3a3c99c2-e2fa-4393-b196-908449450f28 | public HRVOptions setHi1(double hi1) {
this.hi1 = hi1;
return this;
} |
b47e30d2-aa64-43d1-84bd-0668a6dec7b6 | public HRVOptions setHi2(double hi2) {
this.hi2 = hi2;
return this;
} |
8c84267c-a4a0-4c1e-b4ee-bfadd5ce6c18 | public HRVOptions setHi3(double hi3) {
this.hi3 = hi3;
return this;
} |
b18aecaf-963a-4cdb-b6a9-b04e34360841 | public HRVOptions setHi4(double hi4) {
this.hi4 = hi4;
return this;
} |
7da8b165-40ea-4b4b-8110-1c4b2f800276 | public HRVOptions setHwin(double hwin) {
this.hwin = hwin;
return this;
} |
fcfbf975-025c-4e78-ac5c-1814fc2365ed | public HRVOptions setInputTimeFormat(String inputTimeFormat) {
this.inputTimeFormat = inputTimeFormat;
return this;
} |
ebe0708a-990a-4006-844e-d8dfe9dbad3b | public HRVOptions setLo1(double lo1) {
this.lo1 = lo1;
return this;
} |
f333c703-3ab8-47e6-8f06-2c72a0888bcd | public HRVOptions setLo2(double lo2) {
this.lo2 = lo2;
return this;
} |
293e1005-c9e7-40ce-ac51-1b7d6f414217 | public HRVOptions setLo3(double lo3) {
this.lo3 = lo3;
return this;
} |
e046146c-8b6b-4ae1-be49-184b0c517462 | public HRVOptions setLo4(double lo4) {
this.lo4 = lo4;
return this;
} |
3e115a18-6f47-4ef1-b735-83bf80f1305c | public HRVOptions setNnDiff(String nnDiff) {
this.nnDiff = nnDiff;
return this;
} |
8ba988cc-5953-4c72-90bd-baf36293c792 | public HRVOptions setOutputMsec(boolean outputMsec) {
this.outputMsec = outputMsec;
return this;
} |
17c0c41f-1b99-4479-af6c-f3518bb668fc | public HRVOptions setRrInMSec(boolean rrInMSec) {
this.rrInMSec = rrInMSec;
return this;
} |
11f70aad-c9a6-4685-ba6d-685237417802 | public HRVOptions setShortTermStats(boolean shortTermStats) {
this.shortTermStats = shortTermStats;
return this;
} |
e251a58b-0ea3-4d0b-b9e2-77ed1690016e | public HRVOptions setStart(int m, int s) {
return setStart(new LocalTime(0, m, s));
} |
8cac77df-e735-4bed-a5f9-20606a5a0f17 | public HRVOptions setStart(LocalTime start) {
this.start = start;
return this;
} |
cfb48e87-fc7c-4df4-ae8c-492210ad04ee | public HRVOptions startTime(LocalTime start) {
this.start = start;
return this;
} |
b0dd0aaf-feb8-45ad-b2ae-7a4b93f26459 | public WqrsOptions(File record) {
super(record);
setCommand("wqrs");
} |
9d12932f-a460-41a4-91e0-baf83e889ffc | @Override
public List<String> getCommand() {
List<String> cmd = super.getCommand();
if (annotateJPoints) {
cmd.add("-j");
}
if (resample) {
cmd.add("-R");
}
if (powerLine != -1) {
cmd.add("-p");
cmd.add(Integer.toString(powerLine));
}
return cmd;
} |
dc30f8b5-bbfa-4fc0-a015-b8d1d18fd40b | public int getPowerLine() {
return powerLine;
} |
2792f839-b37a-41cc-8357-212a092a1b71 | public boolean isAnnotateJPoints() {
return annotateJPoints;
} |
97978912-1b6a-4afe-9598-dfedf3201958 | public boolean isResample() {
return resample;
} |
4841a8ac-f088-40a0-9799-4baead123670 | public WqrsOptions setAnnotateJPoints(boolean annotateJPoints) {
this.annotateJPoints = annotateJPoints;
return this;
} |
e763008f-43e7-49b8-8fb7-c33f0fff76d3 | public WqrsOptions setPowerLine(int powerLine) {
this.powerLine = powerLine;
return this;
} |
598925b6-c187-4c61-8cf5-006ff37d1e61 | public WqrsOptions setResample(boolean resample) {
this.resample = resample;
return this;
} |
74204255-7c68-4e5e-a566-60941ad8d9e3 | public String getParameter() {
return "-" + name();
} |
61cc4199-9be6-4805-915b-719cbfd6fc80 | public Edf2MitOptions(File edfFile) {
super();
this.outputName = UUID.randomUUID().toString();
this.edfFile = edfFile;
if (edfFile != null && edfFile.exists()) {
this.baseDirectory = edfFile.getParentFile();
}
} |
1b8d43dc-6bcf-4ed7-9ff2-deffd49b642b | public File getBaseDirectory() {
return baseDirectory;
} |
90201b3f-f952-44c4-8bbd-1514b448b337 | public List<String> getCommand() {
List<String> command = new ArrayList<String>();
command.add("edf2mit");
if (edfFile != null) {
command.add("-i");
command.add(edfFile.getName());
}
command.add("-r");
command.add(outputName);
if (isBigEndian) {
command.add("-b");
}
... |
8ef8ad5d-d482-4237-8fb2-38e3a371211a | public String getOutputName() {
return outputName;
} |
05968f3a-fca3-4bcb-a05c-9c5c2a9d547d | public boolean isBigEndian() {
return isBigEndian;
} |
16d30677-db36-4cb2-8bbe-a062fdcb7c4c | public Edf2MitOptions setBaseDirectory(File baseDirectory) {
this.baseDirectory = baseDirectory;
return this;
} |
3833adfc-0872-4fec-8033-ad087827b60f | public Edf2MitOptions setBigEndian(boolean isBigEndian) {
this.isBigEndian = isBigEndian;
return this;
} |
fbf5faa4-28b9-4099-98dd-b668541aa46e | public Edf2MitOptions setSignals(int... signals) {
this.signals = signals;
return this;
} |
951ff8b8-e4f0-4223-b2aa-dfb39369a429 | public RdsampOptions(File record) {
super();
this.outputName = UUID.randomUUID().toString();
this.record = record;
if (record != null) {
this.baseDirectory = record.getParentFile();
}
} |
127383c2-cb57-4f93-a097-0dbbc3db74c8 | public File getBaseDirectory() {
return baseDirectory;
} |
db1e0ffa-1efc-47e2-bba7-5afada246e2e | public List<String> getCommand() {
List<String> cmd = new LinkedList<String>();
cmd.add("rdsamp");
cmd.add("-r");
cmd.add(record.getName());
if (useCSV) {
cmd.add("-c");
}
if (printColumHeadings) {
cmd.add("-v");
}
if (ArrayUtils.isNotEmpty(signals)) {
cmd.add("-s... |
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