id stringlengths 36 36 | text stringlengths 1 1.25M |
|---|---|
9fd76e91-9674-4405-ad17-4ee5f5d48f06 | @Override
public double test(double[][] calib, double[][] test) {
double ret = 0.0;
double N = 0.0;
for (int i = 0; i < calib.length; i++) {
for (int j = 0; j < calib[i].length; j++) {
N += calib[i][j];
ret += Math.abs(calib[i][j] - test[i][j]... |
23ecb6c0-ce1b-444e-9423-63d8ebcf8c21 | @Override
public String testName() {
return "Standard Absolute Error";
} |
57da0d85-f048-410b-8cd2-1a82fc5a1796 | @Override
public String fieldName() {
return "SAE";
} |
fea64f50-665f-4b5c-b2b3-6c054e8b1e62 | @Override
public boolean calibrateToLessThan() {
return true;
} |
130a52bc-ba95-45b0-9f32-5a6c75773db7 | @Override
public boolean isPerfect(double testStat) {
if (testStat == 0.0) { return true; } else { return false; }
} |
7d1d36f7-09c3-4e85-b7e2-44e631e669d9 | @Override
public String fieldName(){return "R2";} |
220f806e-483e-40ac-b969-cc40ca1849e9 | @Override
public String testName(){return "R squared";} |
d35f88e8-06a5-48f5-963b-86f89d65b1b1 | @Override
public boolean calibrateToLessThan(){return false;} |
3cbc5aee-cee2-4f74-9d46-0dffbdbf0246 | @Override
public double test(double[][] calib, double[][] test, double N){
return test(calib,test);
} |
c7b4c352-94b6-4947-868e-8c9714e3c9df | @Override
public double test(double[][] calib, double[][] test){
double eq1 = 0;
double eq2 = 0;
double eq3 = 0;
double obsMean;
double preMean;
double obsTot=0;
double preTot=0;
// Calculate averages
for (int i=0; i<calib.length; i++) {
... |
78bc2a88-6fc5-41dc-a16a-188bbfd60be7 | public boolean isPerfect(double testStat){
if ( testStat == 1.0 ){return true;}else{return false;}
} |
5dd1f2b4-4fe5-455d-a568-7013b2e65f3f | @Override
public double test(double[][] calib, double[][] test, double N){
return test(calib,test);
} |
b6969265-be96-4326-8de9-b60d28793eba | @Override
public double test(double[][] calib, double[][] test) {
double ret = 0.0;
for (int i = 0; i < calib.length; i++) {
for (int j = 0; j < calib[i].length; j++) {
ret += Math.abs(calib[i][j] - test[i][j]);
}
}
return ret ;
} |
e4511fba-63a0-443b-9963-3fe08e2cab98 | @Override
public String testName() {
return "Total Absolute Error";
} |
37870ac0-31c8-4bc1-acaf-ca953bdcec34 | @Override
public String fieldName() {
return "TAE";
} |
2c852298-3e92-4ed5-8bf6-7987babbf12b | @Override
public boolean calibrateToLessThan() {
return true;
} |
248eef40-024a-4c8e-afc1-383fefa6e763 | @Override
public boolean isPerfect(double testStat) {
if (testStat == 0.0) { return true; } else { return false; }
} |
88bb7aa3-6629-4eef-86ea-d3f9ef21bd5f | @Override
public double test(double[][] calib, double[][] test, double N){
return test(calib,test);
} |
d6f63626-dd52-4ac9-b549-a3ef8143cd58 | @Override
public double test(double[][] calib, double[][] test) {
double ret = 0.0;
double N = 0.0;
for (int i = 0; i < calib.length; i++) {
for (int j = 0; j < calib[i].length; j++) {
N += calib[i][j];
ret += Math.abs(calib[i][j] - test[i][j]... |
a4092100-afa3-4c8f-bab2-57e3037aeaab | @Override
public String testName() {
return "Percentage Error";
} |
5f120456-669f-4830-8986-092c3a098613 | @Override
public String fieldName() {
return "PE";
} |
cee0edd3-acef-4b4a-8647-f7a43bcb969b | @Override
public boolean calibrateToLessThan() {
return true;
} |
157c517a-3847-4770-afed-35df3aa4175c | @Override
public boolean isPerfect(double testStat) {
if (testStat == 0.0) { return true; } else { return false; }
} |
5307e5c1-bbc0-47c5-98e7-966e555143e0 | @Override
public double test(double[][] calib, double[][] test, double N){
return test(calib,test);
} |
3ab4cf41-8df3-44a5-a32a-2b8b62d6b68e | @Override
public double test(double[][] calib, double[][] test) {
double ret = 0.0;
for (int i = 0; i < calib.length; i++) {
for (int j = 0; j < calib[i].length; j++) {
ret += Math.abs(calib[i][j] - test[i][j]);
}
}
return ( ret / 2.0 );... |
e3998ac6-56ef-44e8-9406-988948cc3d1f | @Override
public String testName() {
return "Total Error";
} |
8c64b248-9379-436b-873e-4e0fbf2085b0 | @Override
public String fieldName() {
return "TE";
} |
5a89c2b2-c11d-4036-b744-5800e8fcefb9 | @Override
public boolean calibrateToLessThan() {
return true;
} |
d7fa71de-2b8b-4535-b8b7-132229b0f752 | @Override
public boolean isPerfect(double testStat) {
if (testStat == 0.0) { return true; } else { return false; }
} |
9fa46696-936b-4f9e-a8ad-2bda00d9a2f8 | public double test(double[][] calib, double[][] test); |
65288fb2-5cc9-4f40-9f21-f9b95aee553b | public double test(double[][] calib, double[][] test, double N); |
0995cf97-2eee-443d-9a94-4b3f10c640a4 | public String testName(); |
aaefcd59-6467-417c-b360-ea544b7f4558 | public String fieldName(); |
7098a653-bf62-4e40-a6bf-b8b56d308212 | public boolean calibrateToLessThan(); |
febaa798-2fab-4e81-9f6a-431a66c0bf50 | public boolean isPerfect(double testStat); |
d168e3b0-eb4d-45fe-ab5a-6376979dba7c | @Override
public String fieldName(){return "AED";} |
fb7a5ae8-7067-412b-83f7-b2f754155d6f | @Override
public String testName(){return "Absolute Entropy Difference";} |
b1137851-6db3-4f5f-ac92-bc304de921f6 | @Override
public boolean calibrateToLessThan(){return true;} |
8d451ac6-a65f-40c8-acbc-4512f9e460e1 | @Override
public double test(double[][] calib, double[][] test, double N){
return test(calib,test);
} |
6c97aa75-fe0a-47c4-a101-1805ad475a76 | @Override
public double test(double[][] calib, double[][]test){
//Pij=Tij/N
//where
//Tij is the number of interactions between origin i and destination j
//and N is the total number of trips in the matirx
//AED = |Hp-Hq|
//where
//(basically observed matri... |
915ce815-9831-4c14-9c49-75c04cfe5b9d | public boolean isPerfect(double testStat){
if ( testStat == 0.0 ){return true;}else{return false;}
} |
eea6fdc4-7809-4792-bcf8-7abb5690e9f9 | @Override
public String fieldName(){return "Entropy";} |
280d2aa7-26bc-4ba3-8751-ec03de51850f | @Override
public String testName(){return "Entropy (standard entropy measure)";} |
16228a4c-705b-4186-b1a1-cbf5c0bae04b | @Override
public boolean calibrateToLessThan(){return false;} |
4317f2a8-9af3-43f6-aed8-9eb0d9555787 | @Override
public double test(double[][] calib, double[][] test, double N){
return test(calib,test);
} |
55f90dce-01d5-4113-8c9d-f3b0a438aa13 | @Override
public double test(double[][] calib, double[][] test){
double Nq=0;
double Hq=0;
for (int i=0;i<test.length;i++){
for (int j=0;j<test[i].length;j++){
//get the total number of trips in the matrix
Nq+=test[i][j];
}
}... |
c5eb656d-8300-4ef4-8ad7-b27677eb5e6b | public boolean isPerfect(double testStat){
return false;
} |
fb9ffb23-f193-4b50-be46-c748e574c9b3 | @Override
public String fieldName(){return "Z sq";} |
8d363a49-56c4-4337-8ae9-f4aecdda859f | @Override
public String testName(){return "<html>Z<sup>2</sup></html>";} |
16b495ad-e732-4eef-96d7-6b081d5afec8 | @Override
public boolean calibrateToLessThan(){return true;} |
dbd32ce7-4eec-4079-acb1-4255f926dfae | @Override
public double test(double[][] calib, double[][] test, double N){
double Z = 0.0;
for (int i=0; i<calib.length; i++) {
for (int j=0; j<calib[i].length; j++) {
double z = ZScore.calcZScore( test[i][j], calib[i][j], N);
Z += (z*z);
}
... |
b17083b2-a407-47e2-b2fc-49e5fccabae3 | @Override
public double test(double[][] calib, double[][] test){
double N=0.0;
// Calculate total count
for (int i=0; i<calib.length; i++) {
for (int j=0; j<calib[i].length; j++) {
N += calib[i][j];
}
}
return test(calib, test, N);
... |
aeda1c5c-9f5c-4286-9ab5-7986192ea975 | @Override
public boolean isPerfect(double testStat){
//this method needs to be completed
//should return true if the testStat represents a perfect fit
return false;
} |
22c67fc1-29b7-43b6-a2c1-7f87cef706a8 | public IGOF createTest(int testType){
switch(testType){
case GOF_SRMSE:
return new SRMSE();
case GOF_AED:
return new AED();
case GOF_R2:
return new R2();
case GOF_ENTROPY:
return new Entropy();
... |
e117a951-5382-4c4f-9d39-8025c0454bb9 | public JPanel getGOFPanel(){
JPanel jp = new JPanel();
GridLayout grid = new GridLayout();
grid.setRows(cb.length);
jp.setLayout( grid );
for (int i = 0; i < cb.length; i++) {
cb[i] = new JCheckBox(createTest(i).testName());
jp.add(cb[i]);
... |
e78497b0-ed77-4788-bcd3-5e82c79671c2 | public IGOF[] getGOFTestsSelected(){
ArrayList<IGOF> selGof = new ArrayList<IGOF>();
for (int i = 0; i < cb.length; i++) {
if ( cb[i].isSelected() ){
selGof.add( createTest(i) );
}
}
IGOF[] g = new IGOF[selGof.size()];
selGof.toArray(g);
... |
218ddf59-009b-4c3f-8c9d-0b6c06e29c28 | @Override
public double test(double[][] calib, double[][] test, double N){
return test(calib,test);
} |
de1e8395-b6ad-4235-8245-f4e04c24dade | @Override
public double test(double[][] calib, double[][] test) {
double ret = 0.0;
double N = 0.0;
for (int i = 0; i < calib.length; i++) {
for (int j = 0; j < calib[i].length; j++) {
N += calib[i][j];
ret += Math.abs(calib[i][j] - test[i][j]... |
d95912af-3e99-417f-b027-ec626232f955 | @Override
public String testName() {
return "Cell Percentage Error";
} |
326b0dc5-a017-4dfa-83b3-88ce69966f0c | @Override
public String fieldName() {
return "CPE";
} |
9c4e5d95-1f11-449e-b0a4-0fbdc26f12ee | @Override
public boolean calibrateToLessThan() {
return true;
} |
5b6f6cba-6373-45f3-b452-459e0e20908f | @Override
public boolean isPerfect(double testStat) {
if (testStat == 0.0) { return true; } else { return false; }
} |
a016b411-8696-40c2-8eae-bd9289db8f98 | public static double calcZScore(double T, double P, double N){
double pij = P / N;
double tij = T / N;
double numerator = 0.0;
//if pij = 0 then the pij value in the denominator is altered to be a
//suitably small value 1/N.
if ( pij == 0 ){
pij = 1 / N;
... |
79bc20a7-3b0c-4129-b082-d7cbb9462b39 | public abstract void mutate(); |
a42804a9-9fdd-4907-9e54-fd705893a427 | @Override
public abstract String toString(); |
3c74d2f5-f276-4d6c-89b6-b819f433a43f | @Override
public abstract boolean equals(Object o); |
4e223f62-2e2c-49d6-a58f-104d63eb0f1e | @Override
public abstract Gene clone(); |
a855b42a-76c5-4b5c-8920-f02f177b2462 | @Override
public abstract int hashCode(); |
40294bb1-d83b-4f9f-ae3d-a03df89b2d18 | public void catchError(Exception e); |
7192a9eb-8da6-4965-912d-2c2647fee295 | protected Chromosome(){} |
d89b2f20-2cf7-4328-bf0b-0e2b8f2bb008 | protected Chromosome(GeneticAlgorithm parent){
this.parent = parent;
} |
e3beb8db-b578-4e13-a06f-726d1be4de88 | protected Chromosome(GeneticAlgorithm parent, ArrayList<Gene> genes){
this.parent = parent;
this.genes = genes;
} |
ae347f4b-7815-4878-96b9-fc6bb0fc1114 | Chromosome breed(Chromosome partner) throws InstantiationException, IllegalAccessException, IllegalArgumentException, InvocationTargetException, NoSuchMethodException{
int min = genes.size();
int max = genes.size();
if( partner.getGenes().size() > min ){
max = partner.getGen... |
e825559e-27d8-49e3-a575-156c620e141b | double getFitness(){
if ( fitness==null ){
fitness = new Double(calculateFitness(parent.getGof()));
}
return fitness.doubleValue();
} |
40205f3d-aa06-4e3d-8e2d-825c9dc5d861 | protected Chromosome createNewChromosome(GeneticAlgorithm parent) throws NoSuchMethodException,
InstantiationException, IllegalAccessException, IllegalArgumentException, InvocationTargetException{
Class[] parameterDefinition = {parent.getClass()};
Object[] parameter = {parent};
... |
d9cf66dd-6dcd-487d-a3a4-f88e53cb95b8 | protected abstract void populateGenes(); |
c51221f8-b101-49fa-9472-277363a0c9b8 | public abstract double calculateFitness(IGOF gof); |
bda0ab9c-8559-4aab-b779-cf29798f66e2 | public void mutate(){
if (!genes.isEmpty()){
genes.get( parent.getRandom().nextInt( genes.size() ) ).mutate();
}
} |
9d36bf04-28de-456a-b966-8303b692db6c | public ArrayList<Gene> getGenes(){
return genes;
} |
33baff13-ec8b-4504-9e4e-c035b7e15a2e | @Override
public String toString(){
String s = "Genes: ";
for (Gene e : genes) {
s+=e.toString()+" ";
}
s+= "Fitness: "+getFitness();
return s.trim();
} |
66e05ad4-65e6-48c3-a20c-047a7bb8d5c0 | @Override
public boolean equals(Object o){
//set up a boolean to track if the objects are the same
boolean same = true;
//check if we a comparing a Chromosome object
if ( o instanceof Chromosome ){
//get the array of Genes from the object passed in
ArrayList<G... |
21f5fc3b-f9bb-4b75-981f-ae4d79ae685b | private Chromosome instantiateNewChromosomeSubObject(Class[] parameterDefinition, Object[] parameters) throws
NoSuchMethodException, InstantiationException, IllegalAccessException,
IllegalArgumentException, InvocationTargetException{
//get the Class of this sub class
C... |
139d3c51-6e43-48a7-b401-d46c46d78453 | @Override
public int hashCode() {
int hash = 5;
hash = 47 * hash + Objects.hashCode(this.genes);
return hash;
} |
ccdab1f6-2088-486d-b4e7-3f513257c1e1 | private GeneticAlgorithm(){} |
f35e8169-dc18-4d63-bcf7-1fe7f8280f9d | public GeneticAlgorithm(Chromosome chromosome){
random = new Random();
this.chromosome = chromosome;
} |
30ff4969-8e43-4be1-81ca-e6800df34ac5 | public GeneticAlgorithm(Chromosome chromosome, long seed){
this(chromosome);
random = new Random(seed);
} |
b5793d81-853f-46b9-8e18-01521a5e2ec2 | @Override
public void run(){
//create the initial candidate population
//if there is an error report it and end.
for (int i = 0; i < candidatePopulationSize; i++) {
try{
candidatePopulation.add(chromosome.createNewChromosome(this));
}catch(Exc... |
a1f451b9-2610-4b4a-9121-cc43e6fb7e78 | public Random getRandom() {
return random;
} |
f30f248e-98c6-445b-9a28-f971a96cfa83 | public int getGenerations() {
return generations;
} |
4d7d01c1-e4b0-4d35-9033-5b14d766bec0 | public void setGenerations(int generations) {
this.generations = generations;
} |
4cd279a7-98d6-45f4-adb9-e77e211d57a8 | public int getBreedPopulationSize() {
return breedPopulationSize;
} |
150d872f-b2dd-4802-b472-457f20452b6e | public void setBreedPopulationSize(int breedPopulationSize) {
this.breedPopulationSize = breedPopulationSize;
} |
5612a808-8952-43f1-8ae0-4a9b56cbc48e | public int getCandidatePopulationSize() {
return candidatePopulationSize;
} |
bda1bdfa-be52-40dc-8802-7b25313e9fe1 | public void setCandidatePopulationSize(int candidatePopulationSize) {
this.candidatePopulationSize = candidatePopulationSize;
} |
c34cc783-41dd-45a3-994b-a76981b7ec6e | public double getMutationRate() {
return mutationRate;
} |
370f064a-7e17-4e6f-98e9-830cf4dcd897 | public void setMutationRate(double mutationRate) {
this.mutationRate = mutationRate;
} |
cd56ad20-ccb2-4f8e-ba62-e9f9101e98ca | public IGOF getGof() {
return gof;
} |
37beda5c-fa07-4513-95c7-d93d1dce7836 | public void setGof(IGOF gof) {
this.gof = gof;
} |
9bb21383-43df-42e6-bbe1-df8dbd5c2845 | private void reportError(Exception e){
if ( errorListeners.isEmpty() ){
Logger.getGlobal().log(Level.SEVERE, e.getMessage());
}else{
for (IErrorListener listener : errorListeners) {
listener.catchError(e);
}
}
} |
2b9d5505-c87d-44c1-aa3d-2dc7c6403c05 | public void addErrorListener(IErrorListener listener){
this.errorListeners.add(listener);
} |
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