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<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def match_tweet(self, tweet, user_stream): """ Check if a tweet matches the defined criteria :param tweet: The tweet in question :type tweet: :class:`~responsebo...
if user_stream: if len(self.track) > 0: return self.is_tweet_match_track(tweet) return True return self.is_tweet_match_track(tweet) or self.is_tweet_match_follow(tweet)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def connectMSExchange(server): """ Creates a connection for the inputted server to a Microsoft Exchange server. :param server | <smtplib.SMTP> :return (<bool> su...
if not sspi: return False, 'No sspi module found.' # send the SMTP EHLO command code, response = server.ehlo() if code != SMTP_EHLO_OKAY: return False, 'Server did not respond to EHLO command.' sspi_client = sspi.ClientAuth('NTLM') # generate NTLM Type 1 message sec_buffe...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_entries(self, entries: List[Tuple[str, str]], titles, resources): """ Provide the template the data for the toc entries """
self.entries = [] for flag, pagename in entries: title = titles[pagename].children[0] resource = resources.get(pagename, None) if resource and hasattr(resource, 'is_published') and not \ resource.is_published: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def render(self, builder, context, sphinx_app: Sphinx): """ Given a Sphinx builder and context with site in it, generate HTML """
context['sphinx_app'] = sphinx_app context['toctree'] = self html = builder.templates.render(self.template + '.html', context) return html
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def parse_code(url): """ Parse the code parameter from the a URL :param str url: URL to parse :return: code query parameter :rtype: str """
result = urlparse(url) query = parse_qs(result.query) return query['code']
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def user_token(scopes, client_id=None, client_secret=None, redirect_uri=None): """ Generate a user access token :param List[str] scopes: Scopes to get :param str...
webbrowser.open_new(authorize_url(client_id=client_id, redirect_uri=redirect_uri, scopes=scopes)) code = parse_code(raw_input('Enter the URL that you were redirected to: ')) return User(code, client_id=client_id, client_secret=client_secret, redirect_uri=redirect_uri)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def consume_file(self, infile): """Load the specified GFF3 file into memory."""
reader = tag.reader.GFF3Reader(infilename=infile) self.consume(reader)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def consume(self, entrystream): """ Load a stream of entries into memory. Only Feature objects and sequence-region directives are loaded, all other entries are d...
for entry in entrystream: if isinstance(entry, tag.directive.Directive) and \ entry.type == 'sequence-region': self.consume_seqreg(entry) elif isinstance(entry, tag.feature.Feature): self.consume_feature(entry)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def query(self, seqid, start, end, strict=True): """ Query the index for features in the specified range. :param seqid: ID of the sequence to query :param start:...
return sorted([ intvl.data for intvl in self[seqid].search(start, end, strict) ])
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def cli(ctx, stage): """Show the functions that are available, bubble system and custom."""
if not ctx.bubble: ctx.say_yellow( 'There is no bubble present, will not show any transformer functions') raise click.Abort() rule_functions = get_registered_rule_functions() ctx.gbc.say('before loading functions:' + str(len(rule_functions))) load_rule_functions(ctx) ctx...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def to_utc(a_datetime, keep_utc_tzinfo=False): """ Convert a time awared datetime to utc datetime. :param a_datetime: a timezone awared datetime. (If not, then j...
if a_datetime.tzinfo: utc_datetime = a_datetime.astimezone(utc) # convert to utc time if keep_utc_tzinfo is False: utc_datetime = utc_datetime.replace(tzinfo=None) return utc_datetime else: return a_datetime
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def utc_to_tz(utc_datetime, tzinfo, keep_tzinfo=False): """ Convert a UTC datetime to a time awared local time :param utc_datetime: :param tzinfo: :param keep_tz...
tz_awared_datetime = utc_datetime.replace(tzinfo=utc).astimezone(tzinfo) if keep_tzinfo is False: tz_awared_datetime = tz_awared_datetime.replace(tzinfo=None) return tz_awared_datetime
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def repr_data_size(size_in_bytes, precision=2): # pragma: no cover """Return human readable string represent of a file size. Doesn"t support size greater than 1E...
if size_in_bytes < 1024: return "%s B" % size_in_bytes magnitude_of_data = ["B", "KB", "MB", "GB", "TB", "PB", "EB", "ZB", "YB"] index = 0 while 1: index += 1 size_in_bytes, mod = divmod(size_in_bytes, 1024) if size_in_bytes < 1024: break template = "{0:...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def render_toctrees(kb_app: kb, sphinx_app: Sphinx, doctree: doctree, fromdocname: str): """ Look in doctrees for toctree and replace with custom render """
# Only do any of this if toctree support is turned on in KaybeeSettings. # By default, this is off. settings: KaybeeSettings = sphinx_app.config.kaybee_settings if not settings.articles.use_toctree: return # Setup a template and context builder: StandaloneHTMLBuilder = sphinx_app.buil...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def stamp_excerpt(kb_app: kb, sphinx_app: Sphinx, doctree: doctree): """ Walk the tree and extract excert into resource.excerpt """
# First, find out which resource this is. Won't be easy. resources = sphinx_app.env.resources confdir = sphinx_app.confdir source = PurePath(doctree.attributes['source']) # Get the relative path inside the docs dir, without .rst, then # get the resource docname = str(source.relative_to(co...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def bitfieldify(buff, count): """Extract a bitarray out of a bytes array. Some hardware devices read from the LSB to the MSB, but the bit types available prefer ...
databits = bitarray() databits.frombytes(buff) return databits[len(databits)-count:]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_byte_align_buff(bits): """Pad the left side of a bitarray with 0s to align its length with byte boundaries. Args: bits: A bitarray to be padded and ali...
bitmod = len(bits)%8 if bitmod == 0: rdiff = bitarray() else: #KEEP bitarray rdiff = bitarray(8-bitmod) rdiff.setall(False) return rdiff+bits
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create(self, name, cidr, **kwargs): """This function will create a user network. Within OpenStack, it will create a network and a subnet Within AWS, it will ...
return self.driver.create(name, cidr, **kwargs)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def find_whole_word(w): """ Scan through string looking for a location where this word produces a match, and return a corresponding MatchObject instance. Return ...
return re.compile(r'\b({0})\b'.format(w), flags=re.IGNORECASE).search
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def GetCompressedFilesInDir(fileDir, fileList, ignoreDirList, supportedFormatList = ['.rar',]): """ Get all supported files from given directory folder. Appends ...
goodlogging.Log.Info("EXTRACT", "Parsing file directory: {0}".format(fileDir)) if os.path.isdir(fileDir) is True: for globPath in glob.glob(os.path.join(fileDir, '*')): if os.path.splitext(globPath)[1] in supportedFormatList: fileList.append(globPath)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def MultipartArchiving(firstPartExtractList, otherPartSkippedList, archiveDir, otherPartFilePath = None): """ Archive all parts of multi-part compressed file. If...
if otherPartFilePath is None: for filePath in list(otherPartSkippedList): MultipartArchiving(firstPartExtractList, otherPartSkippedList, archiveDir, filePath) else: baseFileName = re.findall("(.+?)[.]part.+?rar", otherPartFilePath)[0] if baseFileName in firstPartExtractList: util.ArchivePr...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DoRarExtraction(rarArchive, targetFile, dstDir): """ RAR extraction with exception catching Parameters rarArchive : RarFile object RarFile object to extract....
try: rarArchive.extract(targetFile, dstDir) except BaseException as ex: goodlogging.Log.Info("EXTRACT", "Extract failed - Exception: {0}".format(ex)) return False else: return True
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def GetRarPassword(skipUserInput): """ Get password for rar archive from user input. Parameters skipUserInput : boolean Set to skip user input. Returns string or...
goodlogging.Log.Info("EXTRACT", "RAR file needs password to extract") if skipUserInput is False: prompt = "Enter password, 'x' to skip this file or 'exit' to quit this program: " response = goodlogging.Log.Input("EXTRACT", prompt) response = util.CheckEmptyResponse(response) else: response = 'x' ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def CheckPasswordReuse(skipUserInput): """ Check with user for password reuse. Parameters skipUserInput : boolean Set to skip user input. Returns int Integer fro...
goodlogging.Log.Info("EXTRACT", "RAR files needs password to extract") if skipUserInput is False: prompt = "Enter 't' to reuse the last password for just this file, " \ "'a' to reuse for all subsequent files, " \ "'n' to enter a new password for this file " \ "or 's' to e...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def register(self, func, singleton=False, threadlocal=False, name=None): """ Register a dependency function """
func._giveme_singleton = singleton func._giveme_threadlocal = threadlocal if name is None: name = func.__name__ self._registered[name] = func return func
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_value(self, name): """ Get return value of a dependency factory or a live singleton instance. """
factory = self._registered.get(name) if not factory: raise KeyError('Name not registered') if factory._giveme_singleton: if name in self._singletons: return self._singletons[name] self._singletons[name] = factory() return self._sin...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def trace(fun, *a, **k): """ define a tracer for a rule function for log and statistic purposes """
@wraps(fun) def tracer(*a, **k): ret = fun(*a, **k) print('trace:fun: %s\n ret=%s\n a=%s\nk%s\n' % (str(fun), str(ret), str(a), str(k))) return ret return tracer
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def timer(fun, *a, **k): """ define a timer for a rule function for log and statistic purposes """
@wraps(fun) def timer(*a, **k): start = arrow.now() ret = fun(*a, **k) end = arrow.now() print('timer:fun: %s\n start:%s,end:%s, took [%s]' % ( str(fun), str(start), str(end), str(end - start))) return ret return timer
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_function(self, fun=None): """get function as RuleFunction or return a NoRuleFunction function"""
sfun = str(fun) self.say('get_function:' + sfun, verbosity=100) if not fun: return NoRuleFunction() # dummy to execute via no_fun if sfun in self._rule_functions: return self._rule_functions[sfun] else: self.add_function(name=sfun, ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_function(self, fun=None, name=None, fun_type=FUN_TYPE): """actually replace function"""
if not name: if six.PY2: name = fun.func_name else: name = fun.__name__ self.say('adding fun(%s)' % name, verbosity=50) self.say('adding fun_type:%s' % fun_type, verbosity=50) if self.function_exists(name): self.cry('...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def function_exists(self, fun): """ get function's existense """
res = fun in self._rule_functions self.say('function exists:' + str(fun) + ':' + str(res), verbosity=10) return res
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def rule_function_not_found(self, fun=None): """ any function that does not exist will be added as a dummy function that will gather inputs for easing into the p...
sfun = str(fun) self.cry('rule_function_not_found:' + sfun) def not_found(*a, **k): return(sfun + ':rule_function_not_found', k.keys()) return not_found
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def parse_value(val): """ Parse values from html """
val = val.replace("%", " ")\ .replace(" ","")\ .replace(",", ".")\ .replace("st","").strip() missing = ["Ejdeltagit", "N/A"] if val in missing: return val elif val == "": return None return float(val)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_html(self, url): """ Get html from url """
self.log.info(u"/GET {}".format(url)) r = requests.get(url) if hasattr(r, 'from_cache'): if r.from_cache: self.log.info("(from cache)") if r.status_code != 200: throw_request_err(r) return r.content
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_json(self, url): """ Get json from url """
self.log.info(u"/GET " + url) r = requests.get(url) if hasattr(r, 'from_cache'): if r.from_cache: self.log.info("(from cache)") if r.status_code != 200: throw_request_err(r) return r.json()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def regions(self): """ Get a list of all regions """
regions = [] elem = self.dimensions["region"].elem for option_elem in elem.find_all("option"): region = option_elem.text.strip() regions.append(region) return regions
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_region_slug(self, id_or_label): """ Get the regional slug to be used in url "Norrbotten" => "Norrbottens" :param id_or_label: Id or label of region """
#region = self.dimensions["region"].get(id_or_label) region = id_or_label slug = region\ .replace(u" ","-")\ .replace(u"ö","o")\ .replace(u"Ö","O")\ .replace(u"ä","a")\ .replace(u"å","a") + "s" EXCEPTIONS = { "Jamt...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def default_value(self): """ The default category when making a query """
if not hasattr(self, "_default_value"): if self.elem_type == "select": try: # Get option marked "selected" def_value = get_option_value(self.elem.select_one("[selected]")) except AttributeError: # ...or if t...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _parse_horizontal_scroll_table(self, table_html): """ Get list of dicts from horizontally scrollable table """
row_labels = [parse_text(x.text) for x in table_html.select(".DTFC_LeftBodyWrapper tbody tr")] row_label_ids = [None] * len(row_labels) cols = [parse_text(x.text) for x in table_html.select(".dataTables_scrollHead th")] value_rows = table_html.select(".dataTables_scrollBody tbody tr") ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_json_file(filename, show_warnings = False): """Check configuration file type is JSON Return a boolean indicating wheather the file is JSON format or not "...
try: config_dict = load_config(filename, file_type = "json") is_json = True except: is_json = False return(is_json)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_yaml_file(filename, show_warnings = False): """Check configuration file type is yaml Return a boolean indicating wheather the file is yaml format or not "...
if is_json_file(filename): return(False) try: config_dict = load_config(filename, file_type = "yaml") if(type(config_dict) == str): is_yaml = False else: is_yaml = True except: is_yaml = False return(is_yaml)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_ini_file(filename, show_warnings = False): """Check configuration file type is INI Return a boolean indicating wheather the file is INI format or not """
try: config_dict = load_config(filename, file_type = "ini") if config_dict == {}: is_ini = False else: is_ini = True except: is_ini = False return(is_ini)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_toml_file(filename, show_warnings = False): """Check configuration file type is TOML Return a boolean indicating wheather the file is TOML format or not "...
if is_yaml_file(filename): return(False) try: config_dict = load_config(filename, file_type = "toml") is_toml = True except: is_toml = False return(is_toml)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _collect_settings(self, apps): """ Iterate over given apps or INSTALLED_APPS and collect the content of each's settings file, which is expected to be in JSON...
contents = {} if apps: for app in apps: if app not in settings.INSTALLED_APPS: raise CommandError("Application '{0}' not in settings.INSTALLED_APPS".format(app)) else: apps = settings.INSTALLED_APPS for app in apps: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def required_unique(objects, key): """ A pyrsistent invariant which requires all objects in the given iterable to have a unique key. :param objects: The objects ...
keys = {} duplicate = set() for k in map(key, objects): keys[k] = keys.get(k, 0) + 1 if keys[k] > 1: duplicate.add(k) if duplicate: return (False, u"Duplicate object keys: {}".format(duplicate)) return (True, u"")
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def item_by_name(self, name): """ Find an item in this collection by its name metadata. :param unicode name: The name of the object for which to search. :raise K...
for obj in self.items: if obj.metadata.name == name: return obj raise KeyError(name)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _init_name_core(self, name: str): """Runs whenever a new instance is initialized or `sep` is set."""
self.__regex = re.compile(rf'^{self._pattern}$') self.name = name
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_name(self, **values) -> str: """Get a new name string from this object's name values. :param values: Variable keyword arguments where the **key** should r...
if not values and self.name: return self.name if values: # if values are provided, solve compounds that may be affected for ck, cvs in _sorted_items(self.compounds): if ck in cvs and ck in values: # redefined compound name to outer scope e.g. fifth =...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def cast_config(cls, config: typing.Mapping[str, str]) -> typing.Dict[str, str]: """Cast `config` to grouped regular expressions."""
return {k: cls.cast(v, k) for k, v in config.items()}
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _execute_primitives(self, commands): """Run a list of executable primitives on this controller, and distribute the returned data to the associated TDOPromise...
for p in commands: if self._scanchain and self._scanchain._debug: print(" Executing", p)#pragma: no cover p.execute(self)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def pretty_version_text(): """Return pretty version text listing all plugins."""
version_lines = ["dtool, version {}".format(dtool_version)] version_lines.append("\nBase:") version_lines.append("dtoolcore, version {}".format(dtoolcore.__version__)) version_lines.append("dtool-cli, version {}".format(__version__)) # List the storage broker packages. version_lines.append("\n...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def dtool(debug): """Tool to work with datasets."""
level = logging.WARNING if debug: level = logging.DEBUG logging.basicConfig( format='%(asctime)s - %(name)s - %(levelname)s - %(message)s', level=level)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_nic(self, instance_id, net_id): """Add a Network Interface Controller"""
#TODO: upgrade with port_id and fixed_ip in future self.client.servers.interface_attach( instance_id, None, net_id, None) return True
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def delete_nic(self, instance_id, port_id): """Delete a Network Interface Controller"""
self.client.servers.interface_detach(instance_id, port_id) return True
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def disassociate_public_ip(self, public_ip_id): """Disassociate a external IP"""
floating_ip = self.client.floating_ips.get(public_ip_id) floating_ip = floating_ip.to_dict() instance_id = floating_ip.get('instance_id') address = floating_ip.get('ip') self.client.servers.remove_floating_ip(instance_id, address) return True
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def split(self, bitindex): """Split a promise into two promises at the provided index. A common operation in JTAG is reading/writing to a register. During the op...
if bitindex < 0: raise ValueError("bitindex must be larger or equal to 0.") if bitindex > len(self): raise ValueError( "bitindex larger than the array's size. " "Len: %s; bitindex: %s"%(len(self), bitindex)) if bitindex == 0: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _fulfill(self, bits, ignore_nonpromised_bits=False): """Supply the promise with the bits from its associated primitive's execution. The fulfillment process m...
if self._allsubsfulfilled(): if not self._components: if ignore_nonpromised_bits: self._value = bits[self._bitstartselective: self._bitstartselective + self._bitlength] ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def makesubatoffset(self, bitoffset, *, _offsetideal=None): """Create a copy of this promise with an offset, and use it as this promise's child. If this promise'...
if _offsetideal is None: _offsetideal = bitoffset if bitoffset is 0: return self newpromise = TDOPromise( self._chain, self._bitstart + bitoffset, self._bitlength, _parent=self, bitstartselective=self._bitstarts...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add(self, promise, bitoffset, *, _offsetideal=None): """Add a promise to the promise collection at an optional offset. Args: promise: A TDOPromise to add to ...
#This Assumes that things are added in order. #Sorting or checking should likely be added. if _offsetideal is None: _offsetideal = bitoffset if isinstance(promise, TDOPromise): newpromise = promise.makesubatoffset( bitoffset, _offsetideal=_offseti...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def split(self, bitindex): """Split a promise into two promises. A tail bit, and the 'rest'. Same operation as the one on TDOPromise, except this works with a co...
if bitindex < 0: raise ValueError("bitindex must be larger or equal to 0.") if bitindex == 0: return None, self lastend = 0 split_promise = False for splitindex, p in enumerate(self._promises): if bitindex in range(lastend, p._bitstart): ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def makesubatoffset(self, bitoffset, *, _offsetideal=None): """Create a copy of this PromiseCollection with an offset applied to each contained promise and regis...
if _offsetideal is None: _offsetideal = bitoffset if bitoffset is 0: return self newpromise = TDOPromiseCollection(self._chain) for promise in self._promises: newpromise.add(promise, bitoffset, _offsetideal=_offsetideal) return newpromise
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def cli(ctx, stage): """Show transformer rules"""
if not ctx.bubble: ctx.say_yellow('There is no bubble present, ' + 'will not show any transformer rules') raise click.Abort() path = ctx.home + '/' RULES = None ctx.say('Stage:'+stage, verbosity=10) if stage in STAGES: if stage in ctx.cfg.CFG: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def connectExec(connection, protocol, commandLine): """Connect a Protocol to a ssh exec session """
deferred = connectSession(connection, protocol) @deferred.addCallback def requestSubsystem(session): return session.requestExec(commandLine) return deferred
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def connectShell(connection, protocol): """Connect a Protocol to a ssh shell session """
deferred = connectSession(connection, protocol) @deferred.addCallback def requestSubsystem(session): return session.requestShell() return deferred
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def connectSubsystem(connection, protocol, subsystem): """Connect a Protocol to a ssh subsystem channel """
deferred = connectSession(connection, protocol) @deferred.addCallback def requestSubsystem(session): return session.requestSubsystem(subsystem) return deferred
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def connectSession(connection, protocol, sessionFactory=None, *args, **kwargs): """Open a SSHSession channel and connect a Protocol to it @param connection: the ...
factory = sessionFactory or defaultSessionFactory session = factory(*args, **kwargs) session.dataReceived = protocol.dataReceived session.closed = lambda: protocol.connectionLost(connectionDone) deferred = defer.Deferred() @deferred.addCallback def connectProtocolAndReturnSession(specificD...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def requestSubsystem(self, subsystem): """Request a subsystem and return a deferred reply. """
data = common.NS(subsystem) return self.sendRequest('subsystem', data, wantReply=True)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def requestPty(self, term=None, rows=0, cols=0, xpixel=0, ypixel=0, modes=''): """Request allocation of a pseudo-terminal for a channel @param term: TERM environ...
#TODO: Needs testing! term = term or os.environ.get('TERM', '') data = packRequest_pty_req(term, (rows, cols, xpixel, ypixel), modes) return self.sendRequest('pty-req', data)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def requestEnv(self, env={}): """Send requests to set the environment variables for the channel """
for variable, value in env.items(): data = common.NS(variable) + common.NS(value) self.sendRequest('env', data)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def commandstr(command): """Convert command into string."""
if command == CMD_MESSAGE_ERROR: msg = "CMD_MESSAGE_ERROR" elif command == CMD_MESSAGE_LIST: msg = "CMD_MESSAGE_LIST" elif command == CMD_MESSAGE_PASSWORD: msg = "CMD_MESSAGE_PASSWORD" elif command == CMD_MESSAGE_MP3: msg = "CMD_MESSAGE_MP3" elif command == CMD_MESSA...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def run(): """Command for reflection database objects"""
parser = OptionParser( version=__version__, description=__doc__, ) parser.add_option( '-u', '--url', dest='url', help='Database URL (connection string)', ) parser.add_option( '-r', '--render', dest='render', default='dot', choices=['plantuml', 'dot'], ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def refresh(self): """ Refresh all class attributes. """
strawpoll_response = requests.get('{api_url}/{poll_id}'.format(api_url=api_url, poll_id=self.id)) raise_status(strawpoll_response) self.status_code = strawpoll_response.status_code self.response_json = strawpoll_response.json() self.id = self.response_json['id'] self.tit...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def write_json_file(self, path): """ Serialize this VariantCollection to a JSON representation and write it out to a text file. """
with open(path, "w") as f: f.write(self.to_json())
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def read_json_file(cls, path): """ Construct a VariantCollection from a JSON file. """
with open(path, 'r') as f: json_string = f.read() return cls.from_json(json_string)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def dumps(data, escape=False, **kwargs): """A wrapper around `json.dumps` that can handle objects that json module is not aware. This function is aware of a list...
if 'sort_keys' not in kwargs: kwargs['sort_keys'] = True converted = json.dumps(data, default=_converter, **kwargs) if escape: # We're escaping the whole dumped string here cause there's no (easy) # way to hook into the native json library and change how they process # valu...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def deserialize(klass, data): """Helper function to access a method that creates objects of a given `klass` with the received `data`. """
handler = DESERIALIZE_REGISTRY.get(klass) if handler: return handler(data) raise TypeError("There is no deserializer registered to handle " "instances of '{}'".format(klass.__name__))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _convert_from(data): """Internal function that will be hooked to the native `json.loads` Find the right deserializer for a given value, taking into account t...
try: module, klass_name = data['__class__'].rsplit('.', 1) klass = getattr(import_module(module), klass_name) except (ImportError, AttributeError, KeyError): # But I still haven't found what I'm looking for # # Waiting for three different exceptions here. KeyError will ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _converter(data): """Internal function that will be passed to the native `json.dumps`. This function uses the `REGISTRY` of serializers and try to convert a ...
handler = REGISTRY.get(data.__class__) if handler: full_name = '{}.{}'.format( data.__class__.__module__, data.__class__.__name__) return { '__class__': full_name, '__value__': handler(data), } raise TypeError(repr(data) + " is not JSO...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def handle_error(self, error): """ Try to detect repetitive errors and sleep for a while to avoid being marked as spam """
logging.exception("try to sleep if there are repeating errors.") error_desc = str(error) now = datetime.datetime.now() if error_desc not in self.error_time_log: self.error_time_log[error_desc] = now return time_of_last_encounter = self.error_time_log[str...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def parse_isodate(datestr): """Parse a string that loosely fits ISO 8601 formatted date-time string """
m = isodate_rx.search(datestr) assert m, 'unrecognized date format: ' + datestr year, month, day = m.group('year', 'month', 'day') hour, minute, second, fraction = m.group('hour', 'minute', 'second', 'fraction') tz, tzhh, tzmm = m.group('tz', 'tzhh', 'tzmm') dt = datetime.datetime(int(year), in...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def ls( self, rev, path, recursive=False, recursive_dirs=False, directory=False, report=() ): """List directory or file :param rev: The revision to use. :param p...
raise NotImplementedError
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def log( self, revrange=None, limit=None, firstparent=False, merges=None, path=None, follow=False ): """Get commit logs :param revrange: Either a single revision...
raise NotImplementedError
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def user_create(self, cloudflare_email, cloudflare_pass, unique_id=None): """ Create new cloudflare user with selected email and id. Optionally also select uniqu...
params = { 'act': 'user_create', 'cloudflare_email': cloudflare_email, 'cloudflare_pass': cloudflare_pass } if unique_id: params['unique_id'] = unique_id return self._request(params)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def zone_set(self, user_key, zone_name, resolve_to, subdomains): """ Create new zone for user associated with this user_key. :param user_key: The unique 3auth st...
params = { 'act': 'zone_set', 'user_key': user_key, 'zone_name': zone_name, 'resolve_to': resolve_to, 'subdomains': subdomains, } return self._request(params)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def full_zone_set(self, user_key, zone_name): """ Create new zone and all subdomains for user associated with this user_key. :param user_key: The unique 3auth st...
params = { 'act': 'full_zone_set', 'user_key': user_key, 'zone_name': zone_name, } return self._request(params)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def user_lookup(self, cloudflare_email=None, unique_id=None): """ Lookup user data based on either his cloudflare_email or his unique_id. :param cloudflare_email...
if not cloudflare_email and not unique_id: raise KeyError( 'Either cloudflare_email or unique_id must be present') params = {'act': 'user_lookup'} if cloudflare_email: params['cloudflare_email'] = cloudflare_email else: params['unique...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def user_auth( self, cloudflare_email=None, cloudflare_pass=None, unique_id=None ): """ Get user_key based on either his email and password or unique_id. :param ...
if not (cloudflare_email and cloudflare_pass) and not unique_id: raise KeyError( 'Either cloudflare_email and cloudflare_pass or unique_id must be present') params = {'act': 'user_auth'} if cloudflare_email and cloudflare_pass: params['cloudflare_email'] ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def zone_list( self, user_key, limit=100, offset=0, zone_name=None, sub_id=None, zone_status='ALL', sub_status='ALL', ): """ List zones for a user. :param user_k...
if zone_status not in ['V', 'D', 'ALL']: raise ValueError('zone_status has to be V, D or ALL') if sub_status not in ['V', 'CNL', 'ALL']: raise ValueError('sub_status has to be V, CNL or ALL') params = { 'act': 'zone_list', 'user_key': user_key, ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def attr_exists(self, attr): """Returns True if at least on instance of the attribute is found """
gen = self.attr_gen(attr) n_instances = len(list(gen)) if n_instances > 0: return True else: return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def datasets(self): """Method returns a list of dataset paths. Examples -------- print(dataset) '/dataset1/data1/data' '/dataset1/data2/data' '/dataset2/data1/da...
HiisiHDF._clear_cache() self.visititems(HiisiHDF._is_dataset) return HiisiHDF.CACHE['dataset_paths']
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_from_filedict(self, filedict): """ Creates h5 file from dictionary containing the file structure. Filedict is a regular dictinary whose keys are hdf5 ...
if self.mode in ['r+','w', 'w-', 'x', 'a']: for h5path, path_content in filedict.iteritems(): if path_content.has_key('DATASET'): # If path exist, write only metadata if h5path in self: for key, value in path_content.it...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def search(self, attr, value, tolerance=0): """Find paths with a key value match Parameters attr : str name of the attribute value : str or numerical value value...
found_paths = [] gen = self.attr_gen(attr) for path_attr_pair in gen: # if attribute is numerical use numerical_value_tolerance in # value comparison. If attribute is string require exact match if isinstance(path_attr_pair.value, str): type_na...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _extractReporterIons(ionArrays, reporterMz, mzTolerance): """Find and a list of reporter ions and return mz and intensity values. Expected reporter mz values...
reporterIons = {'mz': [], 'i': []} for reporterMzValue in reporterMz: limHi = reporterMzValue * (1+mzTolerance) limLo = reporterMzValue * (1-mzTolerance) loPos = bisect.bisect_left(ionArrays['mz'], limLo) upPos = bisect.bisect_right(ionArrays['mz'], limHi) matchingValue...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _correctIsotopeImpurities(matrix, intensities): """Corrects observed reporter ion intensities for isotope impurities. :params matrix: a matrix (2d nested lis...
correctedIntensities, _ = scipy.optimize.nnls(matrix, intensities) return correctedIntensities
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _normalizeImpurityMatrix(matrix): """Normalize each row of the matrix that the sum of the row equals 1. :params matrix: a matrix (2d nested list) containing ...
newMatrix = list() for line in matrix: total = sum(line) if total != 0: newMatrix.append([i / total for i in line]) else: newMatrix.append(line) return newMatrix
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _padImpurityMatrix(matrix, preChannels, postChannels): """Align the values of an isotope impurity matrix and fill up with 0. NOTE: The length of the rows in ...
extendedMatrix = list() lastMatrixI = len(matrix)-1 for i, line in enumerate(matrix): prePadding = itertools.repeat(0., i) postPadding = itertools.repeat(0., lastMatrixI-i) newLine = list(itertools.chain(prePadding, line, postPadding)) extendedMatrix.append(newLine[preChanne...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _processImpurityMatrix(self): """Process the impurity matrix so that it can be used to correct observed reporter intensities. """
processedMatrix = _normalizeImpurityMatrix(self.impurityMatrix) processedMatrix = _padImpurityMatrix( processedMatrix, self.matrixPreChannels, self.matrixPostChannels ) processedMatrix = _transposeMatrix(processedMatrix) return processedMatrix
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def exception(message): """Exception method convenience wrapper."""
def decorator(method): """Inner decorator so we can accept arguments.""" @wraps(method) def wrapper(self, *args, **kwargs): """Innermost decorator wrapper - this is confusing.""" if self.messages: kwargs['message'] = args[0] if args else kwargs.get(...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def to_dict(self): """Convert Exception class to a Python dictionary."""
val = dict(self.payload or ()) if self.message: val['message'] = self.message return val
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def init_app(self, app, config=None, statsd=None): """Init Flask Extension."""
if config is not None: self.config = config elif self.config is None: self.config = app.config self.messages = self.config.get('EXCEPTION_MESSAGE', True) self.prefix = self.config.get('EXCEPTION_PREFIX', DEFAULT_PREFIX) self.statsd = statsd