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<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def count_intersections(self, line_segments_b): """ Count the intersections of two strokes with each other. Parameters line_segments_b : list A list of line sege...
line_segments_a = self.lineSegments # Calculate intersections intersection_points = [] for line1, line2 in itertools.product(line_segments_a, line_segments_b): intersection_points += get_segments_intersections(line1, line2) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_area(self): """Calculate area of bounding box."""
return (self.p2.x-self.p1.x)*(self.p2.y-self.p1.y)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_center(self): """ Get the center point of this bounding box. """
return Point((self.p1.x+self.p2.x)/2.0, (self.p1.y+self.p2.y)/2.0)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _list_ids(path_to_data): """List raw data IDs grouped by symbol ID from a pickle file ``path_to_data``."""
loaded = pickle.load(open(path_to_data, "rb")) raw_datasets = loaded['handwriting_datasets'] raw_ids = {} for raw_dataset in raw_datasets: raw_data_id = raw_dataset['handwriting'].raw_data_id if raw_dataset['formula_id'] not in raw_ids: raw_ids[raw_dataset['formula_id']] = [...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_system(model_folder): """Return the preprocessing description, the feature description and the model description."""
# Get model description model_description_file = os.path.join(model_folder, "info.yml") if not os.path.isfile(model_description_file): logging.error("You are probably not in the folder of a model, because " "%s is not a file. (-m argument)", model_descri...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def display_data(raw_data_string, raw_data_id, model_folder, show_raw): """Print ``raw_data_id`` with the content ``raw_data_string`` after applying the preproce...
print("## Raw Data (ID: %i)" % raw_data_id) print("```") print(raw_data_string) print("```") preprocessing_desc, feature_desc, _ = _get_system(model_folder) # Print model print("## Model") print("%s\n" % model_folder) # Get the preprocessing queue tmp = preprocessing_desc['qu...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def main(list_ids, model, contact_server, raw_data_id, show_raw, mysql_cfg='mysql_online'): """Main function of view.py."""
if list_ids: preprocessing_desc, _, _ = _get_system(model) raw_datapath = os.path.join(utils.get_project_root(), preprocessing_desc['data-source']) _list_ids(raw_datapath) else: if contact_server: data = _fetch_data_from_server(raw...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_parameters(folder): """Get the parameters of the preprocessing done within `folder`. Parameters folder : string Returns ------- tuple : (path of raw data...
# Read the model description file with open(os.path.join(folder, "info.yml"), 'r') as ymlfile: preprocessing_description = yaml.load(ymlfile) # Get the path of the raw data raw_datapath = os.path.join(utils.get_project_root(), preprocessing_description['data-so...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_preprocessed_dataset(path_to_data, outputpath, preprocessing_queue): """Create a preprocessed dataset file by applying `preprocessing_queue` to `path_...
# Log everything logging.info("Data soure %s", path_to_data) logging.info("Output will be stored in %s", outputpath) tmp = "Preprocessing Queue:\n" for preprocessing_class in preprocessing_queue: tmp += str(preprocessing_class) + "\n" logging.info(tmp) # Load from pickled file i...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def main(folder): """Main part of preprocess_dataset that glues things togeter."""
raw_datapath, outputpath, p_queue = get_parameters(folder) create_preprocessed_dataset(raw_datapath, outputpath, p_queue) utils.create_run_logfile(folder)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _create_index_formula_lookup(formula_id2index, feature_folder, index2latex): """ Create a lookup file where the index is mapped to the formula id and the LaT...
index2formula_id = sorted(formula_id2index.items(), key=lambda n: n[1]) index2formula_file = os.path.join(feature_folder, "index2formula_id.csv") with open(index2formula_file, "w") as f: f.write("index,formula_id,latex\n") for formula_id, index in index2formula_id: f.write("%i,%...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def main(feature_folder, create_learning_curve=False): """main function of create_ffiles.py"""
# Read the feature description file with open(os.path.join(feature_folder, "info.yml"), 'r') as ymlfile: feature_description = yaml.load(ymlfile) # Get preprocessed .pickle file from model description file path_to_data = os.path.join(utils.get_project_root(), f...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def training_set_multiplication(training_set, mult_queue): """ Multiply the training set by all methods listed in mult_queue. Parameters training_set : set of al...
logging.info("Multiply data...") for algorithm in mult_queue: new_trning_set = [] for recording in training_set: samples = algorithm(recording['handwriting']) for sample in samples: new_trning_set.append({'id': recording['id'], ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _calculate_feature_stats(feature_list, prepared, serialization_file): # pylint: disable=R0914 """Calculate min, max and mean for each feature. Store it in ob...
# Create feature only list feats = [x for x, _ in prepared] # Label is not necessary # Calculate all means / mins / maxs means = numpy.mean(feats, 0) mins = numpy.min(feats, 0) maxs = numpy.max(feats, 0) # Calculate, min, max and mean vector for each feature with # normalization ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def make_hdf5(dataset_name, feature_count, data, output_filename, create_learning_curve): """ Create the hdf5 file. Parameters filename : name of the file that h...
# create raw data file for hdf5_create if dataset_name == "traindata" and create_learning_curve: max_trainingexamples = 501 output_filename_save = output_filename steps = 10 for trainingexamples in range(100, max_trainingexamples, steps): # adjust output_filename ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_dataset(): """Create a dataset for machine learning of segmentations. Returns ------- tuple : (X, y) where X is a list of tuples. Each tuple is a feature...
seg_data = "segmentation-X.npy" seg_labels = "segmentation-y.npy" # seg_ids = "segmentation-ids.npy" if os.path.isfile(seg_data) and os.path.isfile(seg_labels): X = numpy.load(seg_data) y = numpy.load(seg_labels) with open('datasets.pickle', 'rb') as f: datasets = p...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_segmented_raw_data(top_n=10000): """Fetch data from the server. Parameters top_n : int Number of data sets which get fetched from the server. """
cfg = utils.get_database_configuration() mysql = cfg['mysql_online'] connection = pymysql.connect(host=mysql['host'], user=mysql['user'], passwd=mysql['passwd'], db=mysql['db'], ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_stroke_features(recording, strokeid1, strokeid2): """Get the features used to decide if two strokes belong to the same symbol or not. Parameters recordin...
stroke1 = recording[strokeid1] stroke2 = recording[strokeid2] assert isinstance(stroke1, list), "stroke1 is a %s" % type(stroke1) X_i = [] for s in [stroke1, stroke2]: hw = HandwrittenData(json.dumps([s])) feat1 = features.ConstantPointCoordinates(strokes=1, ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_segmentation(recording, single_clf, single_stroke_clf, stroke_segmented_classifier): """ Get a list of segmentations of recording with the probability of...
mst_wood = get_mst_wood(recording, single_clf) return [(normalize_segmentation([mst['strokes'] for mst in mst_wood]), 1.0)] # HandwrittenData(json.dumps(recording)).show() # return [([[i for i in range(len(recording))]], 1.0)] # #mst_wood = break_mst(mst, recording) # TODO # for...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def break_mst(mst, i): """ Break mst into multiple MSTs by removing one node i. Parameters mst : symmetrical square matrix i : index of the mst where to break Re...
for j in range(len(mst['mst'])): mst['mst'][i][j] = 0 mst['mst'][j][i] = 0 _, components = scipy.sparse.csgraph.connected_components(mst['mst']) comp_indices = {} for el in set(components): comp_indices[el] = {'strokes': [], 'strokes_i': []} for i, comp_nr in enumerate(compo...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _is_out_of_order(segmentation): """ Check if a given segmentation is out of order. Examples -------- False False True """
last_stroke = -1 for symbol in segmentation: for stroke in symbol: if last_stroke > stroke: return True last_stroke = stroke return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_bb_intersections(recording): """ Get all intersections of the bounding boxes of strokes. Parameters recording : list of lists of integers Returns -------...
intersections = numpy.zeros((len(recording), len(recording)), dtype=bool) for i in range(len(recording)-1): a = geometry.get_bounding_box(recording[i]).grow(0.2) for j in range(i+1, len(recording)): b = geometry.get_bounding_box(recording[j]).grow(0.2...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def p_strokes(symbol, count): """ Get the probability of a written `symbol` having `count` strokes. Parameters symbol : str LaTeX command count : int, >= 1 Retur...
global stroke_prob assert count >= 1 epsilon = 0.00000001 if stroke_prob is None: misc_path = pkg_resources.resource_filename('hwrt', 'misc/') stroke_prob_file = os.path.join(misc_path, 'prob_stroke_count_by_symbol.yml') with open(stroke_p...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _add_hypotheses_assuming_new_stroke(self, new_stroke, stroke_nr, new_beam): """ Get new guesses by assuming new_stroke is a new symbol. Parameters new_stroke...
guesses = single_clf.predict({'data': [new_stroke], 'id': None})[:self.m] for hyp in self.hypotheses: new_geometry = deepcopy(hyp['geometry']) most_right = new_geometry if len(hyp['symbols']) == 0: while 'right' i...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_stroke(self, new_stroke): """ Update the beam so that it considers `new_stroke`. When a `new_stroke` comes, it can either belong to a symbol for which at...
global single_clf if len(self.hypotheses) == 0: # Don't put this in the constructor! self.hypotheses = [{'segmentation': [], 'symbols': [], 'geometry': {}, 'probability': Decimal(1) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _prune(self): """Shorten hypotheses to the best k ones."""
self.hypotheses = sorted(self.hypotheses, key=lambda e: e['probability'], reverse=True)[:self.k]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_matrices(): """ Get the matrices from a pickled files. Returns ------- list List of all matrices. """
with open('hwrt/misc/is_one_symbol_classifier.pickle', 'rb') as f: a = pickle.load(f) arrays = [] for el1 in a.input_storage: for el2 in el1.__dict__['storage']: if isinstance(el2, cuda.CudaNdarray): arrays.append({'storage': numpy.asarray(el2), ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_model_tar(matrices, tarname="model-cuda-converted.tar"): """ Create a tar file which contains the model. Parameters matrices : list tarname : str Targ...
# Write layers filenames = [] for layer in range(len(matrices)): if matrices[layer]['name'] == 'W': weights = matrices[layer]['storage'] weights_file = h5py.File('W%i.hdf5' % (layer / 2), 'w') weights_file.create_dataset(weights_file.id.name, data=weights) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def check_python_version(): """Check if the currently running Python version is new enough."""
# Required due to multiple with statements on one line req_version = (2, 7) cur_version = sys.version_info if cur_version >= req_version: print("Python version... %sOK%s (found %s, requires %s)" % (Bcolors.OKGREEN, Bcolors.ENDC, str(platform.python_version()), str(r...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def main(): """Execute all checks."""
check_python_version() check_python_modules() check_executables() home = os.path.expanduser("~") print("\033[1mCheck files\033[0m") rcfile = os.path.join(home, ".hwrtrc") if os.path.isfile(rcfile): print("~/.hwrtrc... %sFOUND%s" % (Bcolors.OKGREEN, Bcolors.ENDC)) e...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def merge(d1, d2): """Merge two raw datasets into one. Parameters d1 : dict d2 : dict Returns ------- dict """
if d1['formula_id2latex'] is None: formula_id2latex = {} else: formula_id2latex = d1['formula_id2latex'].copy() formula_id2latex.update(d2['formula_id2latex']) handwriting_datasets = d1['handwriting_datasets'] for dataset in d2['handwriting_datasets']: handwriting_datasets.a...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_file_consistent(local_path_file, md5_hash): """Check if file is there and if the md5_hash is correct."""
return os.path.isfile(local_path_file) and \ hashlib.md5(open(local_path_file, 'rb').read()).hexdigest() == md5_hash
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def main(): """Main part of the download script."""
# Read config file. This has to get updated via git project_root = utils.get_project_root() infofile = os.path.join(project_root, "raw-datasets/info.yml") logging.info("Read '%s'...", infofile) with open(infofile, 'r') as ymlfile: datasets = yaml.load(ymlfile) for dataset in datasets: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def load_model(): """ Load a n-gram language model for mathematics in ARPA format which gets shipped with hwrt. Returns ------- A NgramLanguageModel object """
logging.info("Load language model...") ngram_arpa_t = pkg_resources.resource_filename('hwrt', 'misc/ngram.arpa.tar.bz2') with tarfile.open(ngram_arpa_t, 'r:bz2') as tar: tarfolder = tempfile.mkdtemp() tar.extractall(path=tarfolder) ngra...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def load_from_arpa_str(self, arpa_str): """ Initialize N-gram model by reading an ARPA language model string. Parameters arpa_str : str A string in ARPA language...
data_found = False end_found = False in_ngram_block = 0 for i, line in enumerate(arpa_str.split("\n")): if not end_found: if not data_found: if "\\data\\" in line: data_found = True else: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_probability(self, sentence): """ Calculate the probability of a sentence, given this language model. Parameters sentence : list A list of strings / token...
if len(sentence) == 1: return Decimal(10)**self.get_unigram_log_prob(sentence) elif len(sentence) == 2: return Decimal(10)**self.get_bigram_log_prob(sentence) else: log_prob = Decimal(0.0) for w1, w2, w3 in zip(sentence, sentence[1:], sentence[2:]...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def evaluate_dir(sample_dir): """Evaluate all recordings in `sample_dir`. Parameters sample_dir : string The path to a directory with *.inkml files. Returns ----...
results = [] if sample_dir[-1] == "/": sample_dir = sample_dir[:-1] for filename in glob.glob("%s/*.inkml" % sample_dir): results.append(evaluate_inkml(filename)) return results
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def evaluate_inkml(inkml_file_path): """Evaluate an InkML file. Parameters inkml_file_path : string path to an InkML file Returns ------- dictionary The dictiona...
logging.info("Start evaluating '%s'...", inkml_file_path) ret = {'filename': inkml_file_path} recording = inkml.read(inkml_file_path) results = evaluate(json.dumps(recording.get_sorted_pointlist()), result_format='LaTeX') ret['results'] = results return ret
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def generate_output_csv(evaluation_results, filename='results.csv'): """Generate the evaluation results in the format Parameters evaluation_results : list of dic...
with open(filename, 'w') as f: for result in evaluation_results: for i, entry in enumerate(result['results']): if entry['semantics'] == ',': result['results']['semantics'] = 'COMMA' f.write("%s, " % result['filename']) f.write(", ".joi...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_project_configuration(): """Get project configuration as dictionary."""
home = os.path.expanduser("~") rcfile = os.path.join(home, ".hwrtrc") if not os.path.isfile(rcfile): create_project_configuration(rcfile) with open(rcfile, 'r') as ymlfile: cfg = yaml.load(ymlfile) return cfg
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_project_configuration(filename): """Create a project configuration file which contains a configuration that might make sense."""
home = os.path.expanduser("~") project_root_folder = os.path.join(home, "hwr-experiments") config = {'root': project_root_folder, 'nntoolkit': None, 'dropbox_app_key': None, 'dropbox_app_secret': None, 'dbconfig': os.path.join(home, "hwrt-config/db.co...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_project_root(): """Get the project root folder as a string."""
cfg = get_project_configuration() # At this point it can be sure that the configuration file exists # Now make sure the project structure exists for dirname in ["raw-datasets", "preprocessed", "feature-files", "models", "re...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_template_folder(): """Get path to the folder where th HTML templates are."""
cfg = get_project_configuration() if 'templates' not in cfg: home = os.path.expanduser("~") rcfile = os.path.join(home, ".hwrtrc") cfg['templates'] = pkg_resources.resource_filename('hwrt', 'templates/') with open(rcfile...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_database_config_file(): """Get the absolute path to the database configuration file."""
cfg = get_project_configuration() if 'dbconfig' in cfg: if os.path.isfile(cfg['dbconfig']): return cfg['dbconfig'] else: logging.info("File '%s' was not found. Adjust 'dbconfig' in your " "~/.hwrtrc file.", cfg['dbconfig'...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_database_configuration(): """Get database configuration as dictionary."""
db_config = get_database_config_file() if db_config is None: return None with open(db_config, 'r') as ymlfile: cfg = yaml.load(ymlfile) return cfg
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def input_int_default(question="", default=0): """A function that works for both, Python 2.x and Python 3.x. It asks the user for input and returns it as a strin...
answer = input_string(question) if answer == "" or answer == "yes": return default else: return int(answer)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_run_logfile(folder): """Create a 'run.log' within folder. This file contains the time of the latest successful run. """
with open(os.path.join(folder, "run.log"), "w") as f: datestring = datetime.datetime.utcnow().strftime("%Y-%m-%d %H:%M:%S") f.write("timestamp: '%s'" % datestring)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def choose_raw_dataset(currently=""): """Let the user choose a raw dataset. Return the absolute path."""
folder = os.path.join(get_project_root(), "raw-datasets") files = [os.path.join(folder, name) for name in os.listdir(folder) if name.endswith(".pickle")] default = -1 for i, filename in enumerate(files): if os.path.basename(currently) == os.path.basename(filename): defa...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_readable_time(t): """ Format the time to a readable format. Parameters t : int Time in ms Returns ------- string """
ms = t % 1000 t -= ms t /= 1000 s = t % 60 t -= s t /= 60 minutes = t % 60 t -= minutes t /= 60 if t != 0: return "%ih, %i minutes %is %ims" % (t, minutes, s, ms) elif minutes != 0: return "%i minutes %is %ims" % (minutes, s, ms) elif s != 0: r...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def default_model(): """Get a path for a default value for the model. Start searching in the current directory."""
project_root = get_project_root() models_dir = os.path.join(project_root, "models") curr_dir = os.getcwd() if os.path.commonprefix([models_dir, curr_dir]) == models_dir and \ curr_dir != models_dir: latest_model = curr_dir else: latest_model = get_latest_folder(models_dir) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_adjusted_model_for_percentages(model_src, model_use): """Replace logreg layer by sigmoid to get probabilities."""
# Copy model file shutil.copyfile(model_src, model_use) # Adjust model file with open(model_src) as f: content = f.read() content = content.replace("logreg", "sigmoid") with open(model_use, "w") as f: f.write(content)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_hdf5(output_filename, feature_count, data): """ Create a HDF5 feature files. Parameters output_filename : string name of the HDF5 file that will be cr...
import h5py logging.info("Start creating of %s hdf file", output_filename) x = [] y = [] for features, label in data: assert len(features) == feature_count, \ "Expected %i features, got %i features" % \ (feature_count, len(features)) x.append(features) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def load_model(model_file): """Load a model by its file. This includes the model itself, but also the preprocessing queue, the feature list and the output semant...
# Extract tar with tarfile.open(model_file) as tar: tarfolder = tempfile.mkdtemp() tar.extractall(path=tarfolder) from . import features from . import preprocessing # Get the preprocessing with open(os.path.join(tarfolder, "preprocessing.yml"), 'r') as ymlfile: preproc...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def evaluate_model_single_recording_preloaded(preprocessing_queue, feature_list, model, output_semantics, recording, recording_id=None): """ Evaluate a model for...
handwriting = handwritten_data.HandwrittenData(recording, raw_data_id=recording_id) handwriting.preprocessing(preprocessing_queue) x = handwriting.feature_extraction(feature_list) import nntoolkit.evaluate model_output = nntoolkit.evaluate.get_mode...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def evaluate_model_single_recording_preloaded_multisymbol(preprocessing_queue, feature_list, model, output_semantics, recording): """ Evaluate a model for a sing...
import json import nntoolkit.evaluate recording = json.loads(recording) logging.info(("## start (%i strokes)" % len(recording)) + "#" * 80) hypotheses = [] # [[{'score': 0.123, symbols: [123, 123]}] # split0 # []] # Split i... for split in get_possible_splits(len(recordi...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def evaluate_model_single_recording_multisymbol(model_file, recording): """ Evaluate a model for a single recording where possibly multiple symbols are. Paramete...
(preprocessing_queue, feature_list, model, output_semantics) = load_model(model_file) logging.info("multiple symbol mode") logging.info(recording) results = evaluate_model_single_recording_preloaded(preprocessing_queue, feature_list, ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def evaluate_model(recording, model_folder, verbose=False): """Evaluate model for a single recording."""
from . import preprocess_dataset from . import features for target_folder in get_recognizer_folders(model_folder): # The source is later than the target. That means we need to # refresh the target if "preprocessed" in target_folder: logging.info("Start applying preproce...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_index2latex(model_description): """ Get a dictionary that maps indices to LaTeX commands. Parameters model_description : string A model description file ...
index2latex = {} translation_csv = os.path.join(get_project_root(), model_description["data-source"], "index2formula_id.csv") with open(translation_csv) as csvfile: csvreader = csv.DictReader(csvfile, delimiter=',', quotechar='"'...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_online_symbol_data(database_id): """Get from the server."""
import pymysql import pymysql.cursors cfg = get_database_configuration() mysql = cfg['mysql_online'] connection = pymysql.connect(host=mysql['host'], user=mysql['user'], passwd=mysql['passwd'], db=mys...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def classify_single_recording(raw_data_json, model_folder, verbose=False): """ Get the classification as a list of tuples. The first value is the LaTeX code, the...
evaluation_file = evaluate_model(raw_data_json, model_folder, verbose) with open(os.path.join(model_folder, "info.yml")) as ymlfile: model_description = yaml.load(ymlfile) index2latex = get_index2latex(model_description) # Map line to probabilites for LaTeX commands with open(evaluation_f...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_objectlist(description, config_key, module): """ Take a description and return a list of classes. Parameters description : list of dictionaries Each dict...
object_list = [] for feature in description: for feat, params in feature.items(): feat = get_class(feat, config_key, module) if params is None: object_list.append(feat()) else: parameters = {} for dicts in params: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_class(name, config_key, module): """Get the class by its name as a string."""
clsmembers = inspect.getmembers(module, inspect.isclass) for string_name, act_class in clsmembers: if string_name == name: return act_class # Check if the user has specified a plugin and if the class is in there cfg = get_project_configuration() if config_key in cfg: mo...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_mysql_cfg(): """ Get the appropriate MySQL configuration """
environment = get_project_configuration()['environment'] cfg = get_database_configuration() if environment == 'production': mysql = cfg['mysql_online'] else: mysql = cfg['mysql_dev'] return mysql
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def softmax(w, t=1.0): """Calculate the softmax of a list of numbers w. Parameters w : list of numbers Returns ------- a list of the same length as w of non-nega...
w = [Decimal(el) for el in w] e = numpy.exp(numpy.array(w) / Decimal(t)) dist = e / numpy.sum(e) return dist
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_beam_cache_directory(): """ Get a directory where pickled Beam Data can be stored. Create that directory, if it doesn't exist. Returns ------- str Path t...
home = os.path.expanduser("~") cache_dir = os.path.join(home, '.hwrt-beam-cache') if not os.path.exists(cache_dir): os.makedirs(cache_dir) return cache_dir
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_beam(secret_uuid): """ Get a beam from the session with `secret_uuid`. Parameters secret_uuid : str Returns ------- The beam object if it exists, otherwi...
beam_dir = get_beam_cache_directory() beam_filename = os.path.join(beam_dir, secret_uuid) if os.path.isfile(beam_filename): with open(beam_filename, 'rb') as handle: beam = pickle.load(handle) return beam else: return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_valid_uuid(uuid_to_test, version=4): """ Check if uuid_to_test is a valid UUID. Parameters uuid_to_test : str version : {1, 2, 3, 4} Returns ------- `True...
try: uuid_obj = UUID(uuid_to_test, version=version) except ValueError: return False return str(uuid_obj) == uuid_to_test
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def prepare_table(table): """Make the table 'symmetric' where the lower left part of the matrix is the reverse probability """
n = len(table) for i, row in enumerate(table): assert len(row) == n for j, el in enumerate(row): if i == j: table[i][i] = 0.0 elif i > j: table[i][j] = 1-table[j][i] return table
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def neclusters(l, K): """Partition list ``l`` in ``K`` partitions, without empty parts. [[[0, 1], [2]], [[1], [0, 2]], [[0], [1, 2]]] [[[0, 1, 2]]] """
for c in clusters(l, K): if all(x for x in c): yield c
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def all_segmentations(l): """Get all segmentations of a list ``l``. This gets bigger fast. See https://oeis.org/A000110 For len(l) = 14 it is 190,899,322 [[[0, 1...
for K in range(1, len(l)+1): gen = neclusters(l, K) for el in gen: yield el
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def q(segmentation, s1, s2): """Test if ``s1`` and ``s2`` are in the same symbol, given the ``segmentation``. """
index1 = find_index(segmentation, s1) index2 = find_index(segmentation, s2) return index1 == index2
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def score_segmentation(segmentation, table): """Get the score of a segmentation."""
stroke_nr = sum(1 for symbol in segmentation for stroke in symbol) score = 1 for i in range(stroke_nr): for j in range(i+1, stroke_nr): qval = q(segmentation, i, j) if qval: score *= table[i][j] else: score *= table[j][i] retur...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def push(self, element, value): """Push an ``element`` into the datastrucutre together with its value and only save it if it currently is one of the top n elemen...
insert_pos = 0 for index, el in enumerate(self.tops): if not self.find_min and el[1] >= value: insert_pos = index+1 elif self.find_min and el[1] <= value: insert_pos = index+1 self.tops.insert(insert_pos, [element, value]) self.top...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _array2cstr(arr): """ Serializes a numpy array to a compressed base64 string """
out = StringIO() np.save(out, arr) return b64encode(out.getvalue())
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _str2array(d): """ Reconstructs a numpy array from a plain-text string """
if type(d) == list: return np.asarray([_str2array(s) for s in d]) ins = StringIO(d) return np.loadtxt(ins)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_output_semantics(model_folder, outputs): """ Create a 'output_semantics.csv' file which contains information what the output of the single output neur...
with open('output_semantics.csv', 'wb') as csvfile: model_description_file = os.path.join(model_folder, "info.yml") with open(model_description_file, 'r') as ymlfile: model_description = yaml.load(ymlfile) logging.info("Start fetching translation dict...") translation_d...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def elementtree_to_dict(element): """Convert an xml ElementTree to a dictionary."""
d = dict() if hasattr(element, 'text') and element.text is not None: d['text'] = element.text d.update(element.items()) # element's attributes for c in list(element): # element's children if c.tag not in d: d[c.tag] = elementtree_to_dict(c) # an element with the ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def strip_end(text, suffix): """Strip `suffix` from the end of `text` if `text` has that suffix."""
if not text.endswith(suffix): return text return text[:len(text)-len(suffix)]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def formula_to_dbid(formula_str, backslash_fix=False): """ Convert a LaTeX formula to the database index. Parameters formula_str : string The formula as LaTeX co...
global __formula_to_dbid_cache if __formula_to_dbid_cache is None: mysql = utils.get_mysql_cfg() connection = pymysql.connect(host=mysql['host'], user=mysql['user'], passwd=mysql['passwd'], ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def insert_recording(hw): """Insert recording `hw` into database."""
mysql = utils.get_mysql_cfg() connection = pymysql.connect(host=mysql['host'], user=mysql['user'], passwd=mysql['passwd'], db=mysql['db'], charset='utf8mb4', ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def insert_symbol_mapping(raw_data_id, symbol_id, user_id, strokes): """ Insert data into `wm_strokes_to_symbol`. Parameters raw_data_id : int user_id : int stro...
mysql = utils.get_mysql_cfg() connection = pymysql.connect(host=mysql['host'], user=mysql['user'], passwd=mysql['passwd'], db=mysql['db'], charset='utf8mb4', ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def filter_label(label, replace_by_similar=True): """Some labels currently don't work together because of LaTeX naming clashes. Those will be replaced by simple ...
bad_names = ['celsius', 'degree', 'ohm', 'venus', 'mars', 'astrosun', 'fullmoon', 'leftmoon', 'female', 'male', 'checked', 'diameter', 'sun', 'Bowtie', 'sqrt', 'cong', 'copyright', 'dag', 'parr', 'notin', 'dotsc', 'mathds', 'mathfrak'] if any(...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def analyze_feature(raw_datasets, feature, basename="aspect_ratios"): """ Apply ``feature`` to all recordings in ``raw_datasets``. Store the results in two files...
# Prepare files csv_file = dam.prepare_file(basename + '.csv') raw_file = dam.prepare_file(basename + '.raw') csv_file = open(csv_file, 'a') raw_file = open(raw_file, 'a') csv_file.write("label,mean,std\n") # Write header raw_file.write("latex,raw_data_id,value\n") # Write header ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def main(handwriting_datasets_file, analyze_features): """Start the creation of the wanted metric."""
# Load from pickled file logging.info("Start loading data '%s' ...", handwriting_datasets_file) loaded = pickle.load(open(handwriting_datasets_file)) raw_datasets = loaded['handwriting_datasets'] logging.info("%i datasets loaded.", len(raw_datasets)) logging.info("Start analyzing...") if a...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def remove_matching_braces(latex): """ If `latex` is surrounded by matching braces, remove them. They are not necessary. Parameters latex : string Returns ------...
if latex.startswith('{') and latex.endswith('}'): opened = 1 matches = True for char in latex[1:-1]: if char == '{': opened += 1 elif char == '}': opened -= 1 if opened == 0: matches = False if match...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def read_folder(folder): """Read all files of `folder` and return a list of HandwrittenData objects. Parameters folder : string Path to a folder Returns ------- ...
recordings = [] for filename in glob.glob(os.path.join(folder, '*.ink')): recording = parse_scg_ink_file(filename) recordings.append(recording) return recordings
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_colors(segmentation): """Get a list of colors which is as long as the segmentation. Parameters segmentation : list of lists Returns ------- list A list ...
symbol_count = len(segmentation) num_colors = symbol_count # See http://stackoverflow.com/a/20298116/562769 color_array = [ "#000000", "#FFFF00", "#1CE6FF", "#FF34FF", "#FF4A46", "#008941", "#006FA6", "#A30059", "#FFDBE5", "#7A4900", "#0000A6", "#63FFAC", "#B79762", "#004D43", ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def fix_times(self): """ Some recordings have wrong times. Fix them so that nothing after loading a handwritten recording breaks. """
pointlist = self.get_pointlist() times = [point['time'] for stroke in pointlist for point in stroke] times_min = max(min(times), 0) # Make sure this is not None for i, stroke in enumerate(pointlist): for j, point in enumerate(stroke): if point['time'] is Non...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_pointlist(self): """ Get a list of lists of tuples from JSON raw data string. Those lists represent strokes with control points. Returns ------- list : A...
try: pointlist = json.loads(self.raw_data_json) except Exception as inst: logging.debug("pointStrokeList: strokelistP") logging.debug(self.raw_data_json) logging.debug("didn't work") raise inst if len(pointlist) == 0: logg...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_sorted_pointlist(self): """ Make sure that the points and strokes are in order. Returns ------- list A list of all strokes in the recording. Each stroke ...
pointlist = self.get_pointlist() for i in range(len(pointlist)): pointlist[i] = sorted(pointlist[i], key=lambda p: p['time']) pointlist = sorted(pointlist, key=lambda stroke: stroke[0]['time']) return pointlist
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_pointlist(self, pointlist): """Overwrite pointlist. Parameters pointlist : a list of strokes; each stroke is a list of points The inner lists represent s...
assert type(pointlist) is list, \ "pointlist is not of type list, but %r" % type(pointlist) assert len(pointlist) >= 1, \ "The pointlist of formula_id %i is %s" % (self.formula_id, self.get_pointlist()) self.raw_data_...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_bounding_box(self): """ Get the bounding box of a pointlist. """
pointlist = self.get_pointlist() # Initialize bounding box parameters to save values minx, maxx = pointlist[0][0]["x"], pointlist[0][0]["x"] miny, maxy = pointlist[0][0]["y"], pointlist[0][0]["y"] mint, maxt = pointlist[0][0]["time"], pointlist[0][0]["time"] # Adjust p...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_bitmap(self, time=None, size=32, store_path=None): """ Get a bitmap of the object at a given instance of time. If time is `None`,`then the bitmap is gene...
# bitmap_width = int(self.get_width()*size) + 2 # bitmap_height = int(self.get_height()*size) + 2 img = Image.new('L', (size, size), 'black') draw = ImageDraw.Draw(img, 'L') bb = self.get_bounding_box() for stroke in self.get_sorted_pointlist(): for p1, p2 in...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def preprocessing(self, algorithms): """Apply preprocessing algorithms. Parameters algorithms : a list objects Preprocessing allgorithms which get applied in ord...
assert type(algorithms) is list for algorithm in algorithms: algorithm(self)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def feature_extraction(self, algorithms): """Get a list of features. Every algorithm has to return the features as a list."""
assert type(algorithms) is list features = [] for algorithm in algorithms: new_features = algorithm(self) assert len(new_features) == algorithm.get_dimension(), \ "Expected %i features from algorithm %s, got %i features" % \ (algorithm.get...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def show(self): """Show the data graphically in a new pop-up window."""
# prevent the following error: # '_tkinter.TclError: no display name and no $DISPLAY environment # variable' # import matplotlib # matplotlib.use('GTK3Agg', warn=False) import matplotlib.pyplot as plt pointlist = self.get_pointlist() if 'pen_down' i...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def count_single_dots(self): """Count all strokes of this recording that have only a single dot. """
pointlist = self.get_pointlist() single_dots = 0 for stroke in pointlist: if len(stroke) == 1: single_dots += 1 return single_dots
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def to_single_symbol_list(self): """ Convert this HandwrittenData object into a list of HandwrittenData objects. Each element of the list is a single symbol. Ret...
symbol_stream = getattr(self, 'symbol_stream', [None for symbol in self.segmentation]) single_symbols = [] pointlist = self.get_sorted_pointlist() for stroke_indices, label in zip(self.segmentation, symbol_stream): ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_git_postversion(addon_dir): """ return the addon version number, with a developmental version increment if there were git commits in the addon_dir after ...
addon_dir = os.path.realpath(addon_dir) last_version = read_manifest(addon_dir).get('version', '0.0.0') last_version_parsed = parse_version(last_version) if not is_git_controlled(addon_dir): return last_version if get_git_uncommitted(addon_dir): uncommitted = True count = 1 ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_odoo_version_info(addons_dir, odoo_version_override=None): """ Detect Odoo version from an addons directory """
odoo_version_info = None addons = os.listdir(addons_dir) for addon in addons: addon_dir = os.path.join(addons_dir, addon) if is_installable_addon(addon_dir): manifest = read_manifest(addon_dir) _, _, addon_odoo_version_info = _get_version( addon_dir, ...