text_prompt
stringlengths
157
13.1k
code_prompt
stringlengths
7
19.8k
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def GroupsUsersDelete(self, group_id, user_id): """ Delete a user from a group in CommonSense. @return (bool) - Boolean indicating whether GroupsPost was su...
if self.__SenseApiCall__('/groups/{group_id}/users/{user_id}.json'.format(group_id = group_id, user_id = user_id), 'DELETE'): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def SensorShare(self, sensor_id, parameters): """ Share a sensor with a user @param sensor_id (int) - Id of sensor to be shared @param parameters (dictiona...
if not parameters['user']['id']: parameters['user'].pop('id') if not parameters['user']['username']: parameters['user'].pop('username') if self.__SenseApiCall__("/sensors/{0}/users".format(sensor_id), "POST", parameters = parameters): return True ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def GroupsSensorsPost(self, group_id, sensors): """ Share a number of sensors within a group. @param group_id (int) - Id of the group to share sensors with ...
if self.__SenseApiCall__("/groups/{0}/sensors.json".format(group_id), "POST", parameters = sensors): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def GroupsSensorsGet(self, group_id, parameters): """ Retrieve sensors shared within the group. @param group_id (int) - Id of the group to retrieve sensors ...
if self.__SenseApiCall("/groups/{0}/sensors.json".format(group_id), "GET", parameters = parameters): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def GroupsSensorsDelete(self, group_id, sensor_id): """ Stop sharing a sensor within a group @param group_id (int) - Id of the group to stop sharing the sen...
if self.__SenseApiCall__("/groups/{0}/sensors/{1}.json".format(group_id, sensor_id), "DELETE"): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DomainsGet(self, parameters = None, domain_id = -1): """ This method returns the domains of the current user. The list also contains the domains to which...
url = '' if parameters is None and domain_id <> -1: url = '/domains/{0}.json'.format(domain_id) else: url = '/domains.json' if self.__SenseApiCall__(url, 'GET', parameters = parameters): return True else: self.__error__ ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DomainUsersGet(self, domain_id, parameters): """ Retrieve users of the specified domain. @param domain_id (int) - Id of the domain to retrieve users fro...
if self.__SenseApiCall__('/domains/{0}/users.json'.format(domain_id), 'GET', parameters = parameters): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DomainTokensGet(self, domain_id): """ T his method returns the list of tokens which are available for this domain. Only domain managers can list domain t...
if self.__SenseApiCall__('/domains/{0}/tokens.json'.format(domain_id), 'GET'): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DomainTokensCreate(self, domain_id, amount): """ This method creates tokens that can be used by users who want to join the domain. Tokens are automatical...
if self.__SenseApiCall__('/domains/{0}/tokens.json'.format(domain_id), 'POST', parameters = {"amount":amount}): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DataProcessorsGet(self, parameters): """ List the users data processors. @param parameters (dictonary) - Dictionary containing the parameters of the req...
if self.__SenseApiCall__('/dataprocessors.json', 'GET', parameters = parameters): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DataProcessorsDelete(self, dataProcessorId): """ Delete a data processor in CommonSense. @param dataProcessorId - The id of the data processor that will...
if self.__SenseApiCall__('/dataprocessors/{id}.json'.format(id = dataProcessorId), 'DELETE'): return True else: self.__error__ = "api call unsuccessful" return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def deriv(self, mu): """ Derivative of the negative binomial variance function. """
p = self._clean(mu) return 1 + 2 * self.alpha * p
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def iwls(y, x, family, offset, y_fix, ini_betas=None, tol=1.0e-8, max_iter=200, wi=None): """ Iteratively re-weighted least squares estimation routine Parameters...
n_iter = 0 diff = 1.0e6 if ini_betas is None: betas = np.zeros((x.shape[1], 1), np.float) else: betas = ini_betas if isinstance(family, Binomial): y = family.link._clean(y) if isinstance(family, Poisson): y_off = y / offset y_off = family.starting_mu(y_...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _next_regular(target): """ Find the next regular number greater than or equal to target. Regular numbers are composites of the prime factors 2, 3, and 5. Als...
if target <= 6: return target # Quickly check if it's already a power of 2 if not (target & (target - 1)): return target match = float('inf') # Anything found will be smaller p5 = 1 while p5 < target: p35 = p5 while p35 < target: # Ceiling integer ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def quantile_1D(data, weights, quantile): """ Compute the weighted quantile of a 1D numpy array. Parameters data : ndarray Input array (one dimension). weights :...
# Check the data if not isinstance(data, np.matrix): data = np.asarray(data) if not isinstance(weights, np.matrix): weights = np.asarray(weights) nd = data.ndim if nd != 1: raise TypeError("data must be a one dimensional array") ndw = weights.ndim if ndw != 1: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def quantile(data, weights, quantile): """ Weighted quantile of an array with respect to the last axis. Parameters data : ndarray Input array. weights : ndarray ...
# TODO: Allow to specify the axis nd = data.ndim if nd == 0: TypeError("data must have at least one dimension") elif nd == 1: return quantile_1D(data, weights, quantile) elif nd > 1: n = data.shape imr = data.reshape((np.prod(n[:-1]), n[-1])) result = np.appl...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def einfo(self, args=None): """ execute a NON-cached, throttled einfo query einfo.fcgi?db=<database> Input: Entrez database (&db) or None (returns info on all En...
if args is None: args = {} return self._query('/einfo.fcgi', args, skip_cache=True)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def native_obj(self): """Native storage object."""
if self.__native is None: self.__native = self._get_object() return self.__native
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def smart_content_type(self): """Smart content type."""
content_type = self.content_type if content_type in (None, '', 'application/octet-stream'): content_type, _ = mimetypes.guess_type(self.name) return content_type
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def smart_content_encoding(self): """Smart content encoding."""
encoding = self.content_encoding if not encoding: base_list = self.basename.split('.') while (not encoding) and len(base_list) > 1: _, encoding = mimetypes.guess_type('.'.join(base_list)) base_list.pop() return encoding
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def native_container(self): """Native container object."""
if self.__native is None: self.__native = self._get_container() return self.__native
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def native_conn(self): """Native connection object."""
if self.__native is None: self.__native = self._get_connection() return self.__native
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def validate(self, name, value): """Validate and return a value."""
if self.valid_set and value not in self.valid_set: raise ImproperlyConfigured( "%s: \"%s\" is not a valid setting (choose between %s)." % (name, value, ", ".join("\"%s\"" % x for x in self.valid_set))) return value
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get(self, name, default=None): """Get value."""
default = default if default is not None else self.default try: value = getattr(_settings, name) except AttributeError: value = os.environ.get(name, default) if self.from_env else default # Convert env variable. if value != default: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _container_whitelist(self): """Container whitelist."""
if self.__container_whitelist is None: self.__container_whitelist = \ set(self.CLOUD_BROWSER_CONTAINER_WHITELIST or []) return self.__container_whitelist
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _container_blacklist(self): """Container blacklist."""
if self.__container_blacklist is None: self.__container_blacklist = \ set(self.CLOUD_BROWSER_CONTAINER_BLACKLIST or []) return self.__container_blacklist
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def container_permitted(self, name): """Return whether or not a container is permitted. :param name: Container name. :return: ``True`` if container is permitted....
white = self._container_whitelist black = self._container_blacklist return name not in black and (not white or name in white)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def app_media_url(self): """Get application media root from real media root URL."""
url = None media_dir = self.CLOUD_BROWSER_STATIC_MEDIA_DIR if media_dir: url = os.path.join(self.MEDIA_URL, media_dir).rstrip('/') + '/' return url
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def module_getmtime(filename): """ Get the mtime associated with a module. If this is a .pyc or .pyo file and a corresponding .py file exists, the time of the .p...
if os.path.splitext(filename)[1].lower() in (".pyc", ".pyo") and os.path.exists(filename[:-1]): return os.path.getmtime(filename[:-1]) if os.path.exists(filename): return os.path.getmtime(filename) return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def module_reload_changed(key): """ Reload a module if it has changed since we last imported it. This is necessary if module a imports script b, script b is chan...
imp.acquire_lock() try: modkey = module_sys_modules_key(key) if not modkey: return False found = None if modkey: for second in WatchList: secmodkey = module_sys_modules_key(second) if secmodkey and sys.modules[modkey] == sy...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def module_sys_modules_key(key): """ Check if a module is in the sys.modules dictionary in some manner. If so, return the key used in that dictionary. :param key...
moduleparts = key.split(".") for partnum, part in enumerate(moduleparts): modkey = ".".join(moduleparts[partnum:]) if modkey in sys.modules: return modkey return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def reload_including_local(module): """ Reload a module. If it isn"t found, try to include the local service directory. This must be called from a thread that ha...
try: reload(module) except ImportError: # This can happen if the module was loaded in the immediate script # directory. Add the service path and try again. if not hasattr(cherrypy.thread_data, "modulepath"): raise path = os.path.abspath(cherrypy.thread_data....
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def reload_recent_submodules(module, mtime=0, processed=[]): """ Recursively reload submodules which are more recent than a specified timestamp. To be called fro...
if module.endswith(".py"): module = module[:-3] if module in processed: return False any_reloaded = False for key in WatchList: if WatchList[key]["parent"] == module: reloaded = reload_recent_submodules(key, mtime, processed) filemtime = module_getmtime(W...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def watch_import(name, globals=None, *args, **kwargs): """ When a module is asked to be imported, check if we have previously imported it. If so, check if the ti...
# Don"t monitor builtin modules. types seem special, so don"t monitor it # either. monitor = not imp.is_builtin(name) and name not in ("types", ) # Don"t monitor modules if we don"t know where they came from monitor = monitor and isinstance(globals, dict) and globals.get("__name__") if not mon...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def watch_module_cache_get(cache, module): """ When we ask to fetch a module with optional config file, check time stamps and dependencies to determine if it sho...
imp.acquire_lock() try: if not hasattr(cache, "timestamps"): cache.timestamps = {} mtime = os.path.getmtime(module) mtime = latest_submodule_time(module, mtime) if getattr(cache, "config", False): config_file = module[:-2] + "yaml" if os.path....
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_int(value, default, test_fn=None): """Convert value to integer. :param value: Integer value. :param default: Default value on failed conversion. :param t...
try: converted = int(value) except ValueError: return default test_fn = test_fn if test_fn else lambda x: True return converted if test_fn(converted) else default
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def requires(module, name=""): """Enforces module presence. The general use here is to allow conditional imports that may fail (e.g., a required python package i...
def wrapped(method): """Call and enforce method.""" if module is None: raise ImproperlyConfigured("Module '%s' is not installed." % name) return method return wrapped
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def dt_from_header(date_str): """Try various RFC conversions to ``datetime`` or return ``None``. :param date_str: Date string. :type date_str: ``string`` :return...
convert_fns = ( dt_from_rfc8601, dt_from_rfc1123, ) for convert_fn in convert_fns: try: return convert_fn(date_str) except ValueError: pass return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def basename(path): """Rightmost part of path after separator."""
base_path = path.strip(SEP) sep_ind = base_path.rfind(SEP) if sep_ind < 0: return path return base_path[sep_ind + 1:]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def path_parts(path): """Split path into container, object. :param path: Path to resource (including container). :type path: `string` :return: Container, storage...
path = path if path is not None else '' container_path = object_path = '' parts = path_list(path) if len(parts) >= 1: container_path = parts[0] if len(parts) > 1: object_path = path_join(*parts[1:]) return container_path, object_path
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def path_yield(path): """Yield on all path parts."""
for part in (x for x in path.strip(SEP).split(SEP) if x not in (None, '')): yield part
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def path_join(*args): """Join path parts to single path."""
return SEP.join((x for x in args if x not in (None, ''))).strip(SEP)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def relpath(path, start): """Get relative path to start. Note: Modeled after python2.6 :meth:`os.path.relpath`. """
path_items = path_list(path) start_items = path_list(start) # Find common parts of path. common = [] for pth, stt in zip(path_items, start_items): if pth != stt: break common.append(pth) # Shared parts index in both lists. common_ind = len(common) parent_nu...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def collective_dr_squared( self ): """ Squared sum of total displacements for these atoms. Args: None Returns: (Float): The square of the summed total displacem...
return sum( np.square( sum( [ atom.dr for atom in self.atoms ] ) ) )
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def occupations( self, site_label ): """ Number of these atoms occupying a specific site type. Args: site_label (Str): Label for the site type being considered....
return sum( atom.site.label == site_label for atom in self.atoms )
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_class(class_string): """ Convert a string version of a function name to the callable object. """
try: mod_name, class_name = get_mod_func(class_string) if class_name != '': cls = getattr(__import__(mod_name, {}, {}, ['']), class_name) return cls except (ImportError, AttributeError): pass raise ImportError('Failed to import %s' % class_string)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _is_gs_folder(cls, result): """Return ``True`` if GS standalone folder object. GS will create a 0 byte ``<FOLDER NAME>_$folder$`` key as a pseudo-directory p...
return (cls.is_key(result) and result.size == 0 and result.name.endswith(cls._gs_folder_suffix))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_prefix(cls, result): """Return ``True`` if result is a prefix object. .. note:: Boto uses the S3 Prefix object for GS prefixes. """
from boto.s3.prefix import Prefix return isinstance(result, Prefix) or cls._is_gs_folder(result)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def translate(self, exc): """Return whether or not to do translation."""
from boto.exception import StorageResponseError if isinstance(exc, StorageResponseError): if exc.status == 404: return self.error_cls(str(exc)) return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_result(cls, container, result): """Create from ambiguous result."""
if result is None: raise errors.NoObjectException elif cls.is_prefix(result): return cls.from_prefix(container, result) elif cls.is_key(result): return cls.from_key(container, result) raise errors.CloudException("Unknown boto result type: %s" % ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_key(cls, container, key): """Create from key object."""
if key is None: raise errors.NoObjectException # Get Key (1123): Tue, 13 Apr 2010 14:02:48 GMT # List Keys (8601): 2010-04-13T14:02:48.000Z return cls(container, name=key.name, size=key.size, content_type=key.conten...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_bucket(cls, connection, bucket): """Create from bucket object."""
if bucket is None: raise errors.NoContainerException # It appears that Amazon does not have a single-shot REST query to # determine the number of keys / overall byte size of a bucket. return cls(connection, bucket.name)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_settings(cls): """Create configuration from Django settings or environment."""
from cloud_browser.app_settings import settings from django.core.exceptions import ImproperlyConfigured conn_cls = conn_fn = None datastore = settings.CLOUD_BROWSER_DATASTORE if datastore == 'AWS': # Try AWS from cloud_browser.cloud.aws import AwsConnect...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_connection_cls(cls): """Return connection class. :rtype: :class:`type` """
if cls.__connection_cls is None: cls.__connection_cls, _ = cls.from_settings() return cls.__connection_cls
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_connection(cls): """Return connection object. :rtype: :class:`cloud_browser.cloud.base.CloudConnection` """
if cls.__connection_obj is None: if cls.__connection_fn is None: _, cls.__connection_fn = cls.from_settings() cls.__connection_obj = cls.__connection_fn() return cls.__connection_obj
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_path(cls, container, path): """Create object from path."""
from datetime import datetime path = path.strip(SEP) full_path = os.path.join(container.base_path, path) last_modified = datetime.fromtimestamp(os.path.getmtime(full_path)) obj_type = cls.type_cls.SUBDIR if is_dir(full_path)\ else cls.type_cls.FILE return c...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_path(cls, conn, path): """Create container from path."""
path = path.strip(SEP) full_path = os.path.join(conn.abs_root, path) return cls(conn, path, 0, os.path.getsize(full_path))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def cubic_lattice( a, b, c, spacing ): """ Generate a cubic lattice. Args: a (Int): Number of lattice repeat units along x. b (Int): Number of lattice repeat u...
grid = np.array( list( range( 1, a * b * c + 1 ) ) ).reshape( a, b, c, order='F' ) it = np.nditer( grid, flags=[ 'multi_index' ] ) sites = [] while not it.finished: x, y, z = it.multi_index r = np.array( [ x, y, z ] ) * spacing neighbours = [ np.roll( grid, +1, axis=0 )[x,y,z], ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def lattice_from_sites_file( site_file, cell_lengths ): """ Generate a lattice from a sites file. Args: site_file (Str): Filename for the file containing the si...
sites = [] site_re = re.compile( 'site:\s+([-+]?\d+)' ) r_re = re.compile( 'cent(?:er|re):\s+([-\d\.e]+)\s+([-\d\.e]+)\s+([-\d\.e]+)' ) r_neighbours = re.compile( 'neighbou{0,1}rs:((\s+[-+]?\d+)+)' ) r_label = re.compile( 'label:\s+(\S+)' ) r_energy = re.compile( 'energy:\s([-+\d\.]+)' ) wi...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_location(request): """ Redirect to a given url while setting the chosen location in the cookie. The url and the location_id need to be specified in the r...
next = request.GET.get('next', None) or request.POST.get('next', None) if not next: next = request.META.get('HTTP_REFERER', None) if not next: next = '/' response = http.HttpResponseRedirect(next) if request.method == 'POST': location_id = request.POST.get('location_id', Non...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def site_specific_nn_occupation( self ): """ Returns the number of occupied nearest neighbour sites, classified by site type. Args: None Returns: (Dict(Str:Int))...
to_return = { l : 0 for l in set( ( site.label for site in self.p_neighbours ) ) } for site in self.p_neighbours: if site.is_occupied: to_return[ site.label ] += 1 return to_return
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def cn_occupation_energy( self, delta_occupation=None ): """ The coordination-number dependent energy for this site. Args: delta_occupation (:obj:Dict(Str:Int), ...
nn_occupations = self.site_specific_nn_occupation() if delta_occupation: for site in delta_occupation: assert( site in nn_occupations ) nn_occupations[ site ] += delta_occupation[ site ] return sum( [ self.cn_occupation_energies[ s ][ n ] for s, n in ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def clear_database(self): """ Removes all geodata stored in database. Useful for development, never use on production. """
self.logger.info('Removing obsolete geoip from database...') IpRange.objects.all().delete() City.objects.all().delete() Region.objects.all().delete() Country.objects.all().delete()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _download_extract_archive(self, url): """ Returns dict with 2 extracted filenames """
self.logger.info('Downloading zipfile from ipgeobase.ru...') temp_dir = tempfile.mkdtemp() archive = zipfile.ZipFile(self._download_url_to_string(url)) self.logger.info('Extracting files...') file_cities = archive.extract(settings.IPGEOBASE_CITIES_FILENAME, path=temp_dir) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _line_to_dict(self, file, field_names): """ Converts file line into dictonary """
for line in file: delimiter = settings.IPGEOBASE_FILE_FIELDS_DELIMITER yield self._extract_data_from_line(line, field_names, delimiter)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _process_cidr_file(self, file): """ Iterate over ip info and extract useful data """
data = {'cidr': list(), 'countries': set(), 'city_country_mapping': dict()} allowed_countries = settings.IPGEOBASE_ALLOWED_COUNTRIES for cidr_info in self._line_to_dict(file, field_names=settings.IPGEOBASE_CIDR_FIELDS): city_id = cidr_info['city_id'] if cidr_info['city_id'] != '-' e...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _process_cities_file(self, file, city_country_mapping): """ Iterate over cities info and extract useful data """
data = {'all_regions': list(), 'regions': list(), 'cities': list(), 'city_region_mapping': dict()} allowed_countries = settings.IPGEOBASE_ALLOWED_COUNTRIES for geo_info in self._line_to_dict(file, field_names=settings.IPGEOBASE_CITIES_FIELDS): country_code = self._get_country_code_f...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _update_geography(self, countries, regions, cities, city_country_mapping): """ Update database with new countries, regions and cities """
existing = { 'cities': list(City.objects.values_list('id', flat=True)), 'regions': list(Region.objects.values('name', 'country__code')), 'countries': Country.objects.values_list('code', flat=True) } for country_code in countries: if country_code n...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def relative_probability( self, l1, l2, c1, c2 ): """ The relative probability for a jump between two sites with specific site types and coordination numbers. Ar...
if self.site_energies: site_delta_E = self.site_energies[ l2 ] - self.site_energies[ l1 ] else: site_delta_E = 0.0 if self.nn_energy: delta_nn = c2 - c1 - 1 # -1 because the hopping ion is not counted in the final site occupation number site_delta...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def generate_nearest_neighbour_lookup_table( self ): """ Construct a look-up table of relative jump probabilities for a nearest-neighbour interaction Hamiltonian...
self.jump_probability = {} for site_label_1 in self.connected_site_pairs: self.jump_probability[ site_label_1 ] = {} for site_label_2 in self.connected_site_pairs[ site_label_1 ]: self.jump_probability[ site_label_1 ][ site_label_2 ] = {} for coor...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def reset( self ): """ Reinitialise the stored displacements, number of hops, and list of sites visited for this `Atom`. Args: None Returns: None """
self.number_of_hops = 0 self.dr = np.array( [ 0.0, 0.0, 0.0 ] ) self.summed_dr2 = 0.0 self.sites_visited = [ self._site.number ]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def by_ip(self, ip): """ Find the smallest range containing the given IP. """
try: number = inet_aton(ip) except Exception: raise IpRange.DoesNotExist try: return self.filter(start_ip__lte=number, end_ip__gte=number)\ .order_by('end_ip', '-start_ip')[0] except IndexError: raise IpRange.DoesNo...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _manage(target, extra='', proj_settings=PROJ_SETTINGS): """Generic wrapper for ``django-admin.py``."""
local("export PYTHONPATH='' && " "export DJANGO_SETTINGS_MODULE='%s' && " "django-admin.py %s %s" % (proj_settings, target, extra), capture=False)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def types(**typefuncs): """ Decorate a function that takes strings to one that takes typed values. The decorator's arguments are functions to perform type conver...
def wrap(f): @functools.wraps(f) def typed_func(*pargs, **kwargs): # Analyze the incoming arguments so we know how to apply the # type-conversion functions in `typefuncs`. argspec = inspect.getargspec(f) # The `args` property contains the list of nam...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def return_type(rettype): """ Decorate a function to automatically convert its return type to a string using a custom function. Web-based service functions must ...
def wrap(f): @functools.wraps(f) def converter(*pargs, **kwargs): # Run the function to capture the output. result = f(*pargs, **kwargs) # Convert the result using the return type function. try: result = rettype(result) ex...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def excepts(cls): """Return tuple of underlying exception classes to trap and wrap. :rtype: ``tuple`` of ``type`` """
if cls._excepts is None: cls._excepts = tuple(cls.translations.keys()) return cls._excepts
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def translate(self, exc): """Return translation of exception to new class. Calling code should only raise exception if exception class is passed in, else ``None`...
# Find actual class. for key in self.translations.keys(): if isinstance(exc, key): # pylint: disable=unsubscriptable-object return self.translations[key](str(exc)) return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def settings_view_decorator(function): """Insert decorator from settings, if any. .. note:: Decorator in ``CLOUD_BROWSER_VIEW_DECORATOR`` can be either a callabl...
dec = settings.CLOUD_BROWSER_VIEW_DECORATOR # Trade-up string to real decorator. if isinstance(dec, str): # Split into module and decorator strings. mod_str, _, dec_str = dec.rpartition('.') if not (mod_str and dec_str): raise ImportError("Unable to import module: %s" ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _breadcrumbs(path): """Return breadcrumb dict from path."""
full = None crumbs = [] for part in path_yield(path): full = path_join(full, part) if full else part crumbs.append((full, part)) return crumbs
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def browser(request, path='', template="cloud_browser/browser.html"): """View files in a file path. :param request: The request. :param path: Path to resource, i...
from itertools import islice try: # pylint: disable=redefined-builtin from future_builtins import filter except ImportError: # pylint: disable=import-error from builtins import filter # Inputs. container_path, object_path = path_parts(path) incoming = request....
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def document(_, path=''): """View single document from path. :param path: Path to resource, including container as first part of path. """
container_path, object_path = path_parts(path) conn = get_connection() try: container = conn.get_container(container_path) except errors.NoContainerException: raise Http404("No container at: %s" % container_path) except errors.NotPermittedException: raise Http404("Access den...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: """Truncate string on character boundary. .. note:: Django ticket `5025 <http://code.djangoproject.com/ticket/5025>`_ has a patch for a more extensible and robust...
length = None try: length = int(num) except ValueError: pass if length is not None and len(value) > length: return value[:length - len(end_text)] + end_text return value
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def cloud_browser_media_url(_, token): """Get base media URL for application static media. Correctly handles whether or not the settings variable ``CLOUD_BROWSER...
bits = token.split_contents() if len(bits) != 2: raise TemplateSyntaxError("'%s' takes one argument" % bits[0]) rel_path = bits[1] return MediaUrlNode(rel_path)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def reset( self ): """ Reset all counters for this simulation. Args: None Returns: None """
self.lattice.reset() for atom in self.atoms.atoms: atom.reset()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_number_of_atoms( self, n, selected_sites=None ): """ Set the number of atoms for the simulation, and populate the simulation lattice. Args: n (Int): Num...
self.number_of_atoms = n self.atoms = species.Species( self.lattice.populate_sites( self.number_of_atoms, selected_sites=selected_sites ) )
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_initialised( self ): """ Check whether the simulation has been initialised. Args: None Returns: None """
if not self.lattice: raise AttributeError('Running a simulation needs the lattice to be initialised') if not self.atoms: raise AttributeError('Running a simulation needs the atoms to be initialised') if not self.number_of_jumps and not self.for_time: raise At...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def old_collective_correlation( self ): """ Returns the collective correlation factor, f_I Args: None Returns: (Float): The collective correlation factor, f_I. ...
if self.has_run: return self.atoms.collective_dr_squared() / float( self.number_of_jumps ) else: return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def collective_diffusion_coefficient( self ): """ Returns the collective or "jump" diffusion coefficient, D_J. Args: None Returns: (Float): The collective diffu...
if self.has_run: return self.atoms.collective_dr_squared() / ( 6.0 * self.lattice.time ) else: return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def setup_lookup_table( self, hamiltonian='nearest-neighbour' ): """ Create a jump-probability look-up table corresponding to the appropriate Hamiltonian. Args: ...
expected_hamiltonian_values = [ 'nearest-neighbour', 'coordination_number' ] if hamiltonian not in expected_hamiltonian_values: raise ValueError self.lattice.jump_lookup_table = lookup_table.LookupTable( self.lattice, hamiltonian )
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def update( self, jump ): """ Update the lattice state by accepting a specific jump Args: jump (Jump): The jump that has been accepted. Returns: None. """
atom = jump.initial_site.atom dr = jump.dr( self.cell_lengths ) #print( "atom {} jumped from site {} to site {}".format( atom.number, jump.initial_site.number, jump.final_site.number ) ) jump.final_site.occupation = atom.number jump.final_site.atom = atom jump.final_site...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def populate_sites( self, number_of_atoms, selected_sites=None ): """ Populate the lattice sites with a specific number of atoms. Args: number_of_atoms (Int): T...
if number_of_atoms > self.number_of_sites: raise ValueError if selected_sites: atoms = [ atom.Atom( initial_site = site ) for site in random.sample( [ s for s in self.sites if s.label in selected_sites ], number_of_atoms ) ] else: atoms = [ atom.Atom( initial...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def jump( self ): """ Select a jump at random from all potential jumps, then update the lattice state. Args: None Returns: None """
potential_jumps = self.potential_jumps() if not potential_jumps: raise BlockedLatticeError('No moves are possible in this lattice') all_transitions = transitions.Transitions( self.potential_jumps() ) random_jump = all_transitions.random() delta_t = all_transitions.ti...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def site_occupation_statistics( self ): """ Average site occupation for each site type Args: None Returns: (Dict(Str:Float)): Dictionary of occupation statistic...
if self.time == 0.0: return None occupation_stats = { label : 0.0 for label in self.site_labels } for site in self.sites: occupation_stats[ site.label ] += site.time_occupied for label in self.site_labels: occupation_stats[ label ] /= self.time ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_site_energies( self, energies ): """ Set the energies for every site in the lattice according to the site labels. Args: energies (Dict(Str:Float): Dicti...
self.site_energies = energies for site_label in energies: for site in self.sites: if site.label == site_label: site.energy = energies[ site_label ]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_cn_energies( self, cn_energies ): """ Set the coordination number dependent energies for this lattice. Args: cn_energies (Dict(Str:Dict(Int:Float))): Di...
for site in self.sites: site.set_cn_occupation_energies( cn_energies[ site.label ] ) self.cn_energies = cn_energies
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def site_specific_coordination_numbers( self ): """ Returns a dictionary of coordination numbers for each site type. Args: None Returns: (Dict(Str:List(Int))) : ...
specific_coordination_numbers = {} for site in self.sites: specific_coordination_numbers[ site.label ] = site.site_specific_neighbours() return specific_coordination_numbers
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def transmute_sites( self, old_site_label, new_site_label, n_sites_to_change ): """ Selects a random subset of sites with a specific label and gives them a diffe...
selected_sites = self.select_sites( old_site_label ) for site in random.sample( selected_sites, n_sites_to_change ): site.label = new_site_label self.site_labels = set( [ site.label for site in self.sites ] )
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def connected_sites( self, site_labels=None ): """ Searches the lattice to find sets of sites that are contiguously neighbouring. Mutually exclusive sets of cont...
if site_labels: selected_sites = self.select_sites( site_labels ) else: selected_sites = self.sites initial_clusters = [ cluster.Cluster( [ site ] ) for site in selected_sites ] if site_labels: blocking_sites = self.site_labels - set( site_labels ) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def select_sites( self, site_labels ): """ Selects sites in the lattice with specified labels. Args: site_labels (List(Str)|Set(Str)|Str): Labels of sites to se...
if type( site_labels ) in ( list, set ): selected_sites = [ s for s in self.sites if s.label in site_labels ] elif type( site_labels ) is str: selected_sites = [ s for s in self.sites if s.label is site_labels ] else: raise ValueError( str( site_labels ) ) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def merge( self, other_cluster ): """ Combine two clusters into a single cluster. Args: other_cluster (Cluster): The second cluster to combine. Returns: (Cluste...
new_cluster = Cluster( self.sites | other_cluster.sites ) new_cluster.neighbours = ( self.neighbours | other_cluster.neighbours ).difference( new_cluster.sites ) return new_cluster