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Given the following text description, write Python code to implement the functionality described below step by step Description: This is the <a href="https Step1: How do we define direction of an earth magnetic field? Earth magnetic field is a vector. To define a vector we need to choose a coordinate system. We use r...
Python Code: import numpy as np from geoscilabs.mag import Mag, Simulator %matplotlib inline Explanation: This is the <a href="https://jupyter.org/">Jupyter Notebook</a>, an interactive coding and computation environment. For this lab, you do not have to write any code, you will only be running it. To use the notebook...
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Given the following text description, write Python code to implement the functionality described below step by step Description: How many tweets are about the 'wall'? Step1: What is the average twitter tenure of people who tweeted about the wall? Step2: There are a couple of users tweeting multiple times, but most t...
Python Code: # Lowercase the hashtags and tweet body df['hashtags'] = df['hashtags'].str.lower() df['text'] = df['text'].str.lower() print("Total number of tweets containing hashtag 'wall' = {}".format(len(df[df['hashtags'].str.contains('wall')]))) print("Total number of tweets whose body contains 'wall' = {}".format(l...
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Given the following text description, write Python code to implement the functionality described below step by step Description: We're wasting a bunch of time waiting for our iterators to produce minibatches when we're running epochs. Seems like we should probably precompute them while the minibatch is being run on th...
Python Code: import multiprocessing import numpy as np p = multiprocessing.Pool(4) x = range(3) f = lambda x: x*2 def f(x): return x**2 print(x) Explanation: We're wasting a bunch of time waiting for our iterators to produce minibatches when we're running epochs. Seems like we should probably precompute them while ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Intialize a spark instance- Step1: Get number of RDD partitions- Step2: We will define a square function for our map operation- Step3: The above map function maps generated two types of k...
Python Code: sc = pyspark.SparkContext(appName="spark-notebook") ss = SparkSession(sc) myRDD = sc.textFile("file:///path/to/part3/numbers.txt", 10) Explanation: Intialize a spark instance- End of explanation myRDD.getNumPartitions() print myRDD.take(20) # get first 20 values Explanation: Get number of RDD partitions- E...
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Given the following text description, write Python code to implement the functionality described below step by step Description: 1. Observation and clean of the data Step1: 1.1. Missing values Step2: Where are the missing values ? Step3: To clean the data, we will go step by step Step4: Check now how many incomple...
Python Code: print('Number of diad: ', len(data)) print('Number of players: ', len(data.playerShort.unique())) print('Number of referees: ', len(data.refNum.unique())) Explanation: 1. Observation and clean of the data End of explanation complete = len(data.dropna()) all_ = len(data_total) print('Number of row with comp...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Primer Design One of the first things anyone learns in a molecular biology lab is how to design primers. The exact strategies vary a lot and are sometimes polymerase-specific. coral uses the...
Python Code: import coral as cor Explanation: Primer Design One of the first things anyone learns in a molecular biology lab is how to design primers. The exact strategies vary a lot and are sometimes polymerase-specific. coral uses the Klavins' lab approach of targeting a specific melting temperature (Tm) and nothing ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Preprocess data Step1: Conversion and cleaning Surprise forces you to use schema ["user_id", "doc_id", "rating"] CF models are often sensitive to NA values -> replace NaN with 0 (TBD Step2:...
Python Code: # Import data path = "../data/petdata_1000_100.csv" raw_data = pd.read_csv(path, index_col="doc_uri") assert raw_data.shape == (1000,100), "Import error, df has false shape" Explanation: Preprocess data End of explanation # Convert df data = raw_data.unstack().to_frame().reset_index() data.columns = ["user...
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Given the following text problem statement, write Python code to implement the functionality described below in problem statement Problem: Tuning XGBoost Hyperparameters with Grid Search
Python Code:: from sklearn.model_selection import GridSearchCV import xgboost as xgb # create a dictionary containing the hyperparameters # to tune and the range of values to try PARAMETERS = {"subsample":[0.75, 1], "colsample_bytree":[0.75, 1], "max_depth":[2, 6], "min_child_w...
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Given the following text description, write Python code to implement the functionality described below step by step Description: <h1>Table of Contents<span class="tocSkip"></span></h1> <div class="toc" style="margin-top Step1: Because the Seasons 2 and 3 together only use about 1.7 GB of RAM, no need of special on-di...
Python Code: import planet4 as p4 import pandas as pd from planet4 import io db = io.DBManager() db_fname = db.dbname db.dbname Explanation: <h1>Table of Contents<span class="tocSkip"></span></h1> <div class="toc" style="margin-top: 1em;"><ul class="toc-item"><li><span><a href="#Task:-Define-status-of-Planet-4" data-to...
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Given the following text description, write Python code to implement the functionality described below step by step Description: WMI Win32_Process Class and Create Method for Remote Execution Metadata | | | | Step1: Download & Process Mordor Dataset Step2: Analytic I Look for wmiprvse.exe spawni...
Python Code: from openhunt.mordorutils import * spark = get_spark() Explanation: WMI Win32_Process Class and Create Method for Remote Execution Metadata | | | |:------------------|:---| | collaborators | ['@Cyb3rWard0g', '@Cyb3rPandaH'] | | creation date | 2019/08/10 | | modification date |...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Data Structures Data structures are a concrete implementation of the specification provided by one or more particular abstract data types (ADT), which specify the operations that can be perf...
Python Code: from openanalysis.data_structures import DataStructureBase, DataStructureVisualization import gi.repository.Gtk as gtk # for displaying GUI dialogs Explanation: Data Structures Data structures are a concrete implementation of the specification provided by one or more particular abstract data types (ADT),...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Processing a LexisNexus text export into CSV Preparation download the file Step1: Show the number of characters in the text file Step2: Downloading the text file directly from github using...
Python Code: text = open('data/LexisNexusVapingExample.txt', 'r').read() Explanation: Processing a LexisNexus text export into CSV Preparation download the file: https://github.com/mbod/intro_python_for_comm/blob/master/data/LexisNexusVapingExample.txt place it in the data folder of your IPython notebook Task Load the ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Fixed and Random Effect Models Step1: Exploring Within-Group Variation and Between-Group Variation Multilevel models make sense in cases where we might expect there to be variation between ...
Python Code: # THINGS TO IMPORT # This is a baseline set of libraries I import by default if I'm rushed for time. %matplotlib inline import codecs # load UTF-8 Content import json # load JSON files import pandas as pd # Pandas handles dataframes import numpy as np...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Since we announced our collaboration with the World Bank and more partners to create the Open Traffic platform, we’ve been busy. We’ve shared two technical previews of the OSMLR linear refer...
Python Code: import os import sys; sys.path.insert(0, os.path.abspath('..')); import validator.validator as val import numpy as np import glob import pandas as pd import pickle import seaborn as sns from matplotlib import pyplot as plt from IPython.display import Image from IPython.core.display import HTML %matplotlib...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Hodograph Inset Layout a Skew-T plot with a hodograph inset into the plot. Step1: Upper air data can be obtained using the siphon package, but for this example we will use some of MetPy's s...
Python Code: import matplotlib.pyplot as plt from mpl_toolkits.axes_grid1.inset_locator import inset_axes import numpy as np import pandas as pd import metpy.calc as mpcalc from metpy.cbook import get_test_data from metpy.plots import add_metpy_logo, Hodograph, SkewT from metpy.units import units Explanation: Hodograph...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Chapter 4 - Inferences with Gaussians 4.1 Inferring a mean and standard deviation Inferring the mean and variance of a Gaussian distribution. $$ \mu \sim \text{Gaussian}(0, .001) $$ $$ \si...
Python Code: # Data x = np.array([1.1, 1.9, 2.3, 1.8]) n = len(x) with pm.Model() as model1: # prior mu = pm.Normal('mu', mu=0, tau=.001) sigma = pm.Uniform('sigma', lower=0, upper=10) # observed xi = pm.Normal('xi',mu=mu, tau=1/(sigma**2), observed=x) # inference trace = pm.sample(1e3,...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Title Step1: Method 1 Step2: Method 2
Python Code: # Import modules import pandas as pd import numpy as np # Create a dataframe raw_data = {'first_name': ['Jason', 'Molly', np.nan, np.nan, np.nan], 'nationality': ['USA', 'USA', 'France', 'UK', 'UK'], 'age': [42, 52, 36, 24, 70]} df = pd.DataFrame(raw_data, columns = ['first_name', 'nation...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Quick start Open this page in an interactive mode via Google Colaboratory. In this quick starting guide we show the basics of working with t3f library. The main concept of the library is a T...
Python Code: import numpy as np # Import TF 2. %tensorflow_version 2.x import tensorflow as tf # Fix seed so that the results are reproducable. tf.random.set_seed(0) np.random.seed(0) try: import t3f except ImportError: # Install T3F if it's not already installed. !git clone https://github.com/Bihaqo/t3f.gi...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Delaunay Here, we'll perform various analysis by constructing graphs and measure properties of those graphs to learn more about the data Step1: We'll start with just looking at analysis in ...
Python Code: import csv from scipy.stats import kurtosis from scipy.stats import skew from scipy.spatial import Delaunay import numpy as np import math import skimage import matplotlib.pyplot as plt import seaborn as sns from skimage import future import networkx as nx from ragGen import * %matplotlib inline sns.set_co...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Copyright 2021 The TensorFlow Authors. Step1: Recommending movies Step2: Preparing the dataset Next, we need to prepare our dataset. We are going to leverage the data generation utility in...
Python Code: #@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # dist...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Leemos los sondeos obtenidos de la wikipedia (https Step1: Hacemos un dibujo con los datos. Cada valor del sondeo se muestra con puntos. Además hacemos una regresión con un Gaussian Process...
Python Code: book = xlrd.open_workbook("sondeos.xlsx") sh = book.sheet_by_index(0) PP = [] PSOE = [] IU = [] UPyD = [] Podemos = [] Ciudadanos = [] fecha = [] mesEsp = ['ene', 'feb', 'mar', 'abr', 'may', 'jun', 'jul', 'ago', 'sep', 'oct', 'nov', 'dic'] mesEng = ['jan', 'feb', 'mar', 'apr', 'may', 'jun', 'jul', 'aug', '...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Dev for Handling BAM Extaction Radii Step1: NOTE that in the case below, r6.l6 us loaded while r5.l5 is the config file default. This is the desired behavior as there is not r5.l5 for this ...
Python Code: # Setup ipython environment %load_ext autoreload %autoreload 2 # %matplotlib auto %matplotlib inline # Import useful things from nrutils import scsearch,gwylm # Setup plotting backend import matplotlib as mpl from mpl_toolkits.mplot3d import axes3d mpl.rcParams['lines.linewidth'] = 0.8 mpl.rcParams['font.f...
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Given the following text problem statement, write Python code to implement the functionality described below in problem statement Problem: I have been trying to get the arithmetic result of a lognormal distribution using Scipy. I already have the Mu and Sigma, so I don't need to do any other prep work. If I need to be ...
Problem: import numpy as np from scipy import stats stddev = 2.0785 mu = 1.744 expected_value = np.exp(mu + stddev ** 2 / 2) median = np.exp(mu)
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Given the following text description, write Python code to implement the functionality described below step by step Description: Definition(s) The closest pair of points problem or closest pair problem is a problem of computational geometry Step1: Naive implementation of closest_pair Step2: Draw points (with closest...
Python Code: import numpy as np import matplotlib import matplotlib.pyplot as plt from operator import itemgetter %matplotlib inline def euclid_distance(p, q): return np.sqrt((p[0] - q[0]) ** 2 + (p[1] - q[1]) ** 2) def search(points, st, dr): if st >= dr: return np.inf, None, None elif st + 1 == dr...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Instructions Compute the sample statistics on the given data using numpy. Write the equation in LaTeX first and then complete the computation in Python second. You may refer to equations in ...
Python Code: #example example_data_do_not_use = [4,3,6,3] print(sum(example_data_do_not_use)) Explanation: Instructions Compute the sample statistics on the given data using numpy. Write the equation in LaTeX first and then complete the computation in Python second. You may refer to equations in other problems. For exa...
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Given the following text description, write Python code to implement the functionality described below step by step Description: ES-DOC CMIP6 Model Properties - Aerosol MIP Era Step1: Document Authors Set document authors Step2: Document Contributors Specify document contributors Step3: Document Publication Specify...
Python Code: # DO NOT EDIT ! from pyesdoc.ipython.model_topic import NotebookOutput # DO NOT EDIT ! DOC = NotebookOutput('cmip6', 'nerc', 'hadgem3-gc31-hh', 'aerosol') Explanation: ES-DOC CMIP6 Model Properties - Aerosol MIP Era: CMIP6 Institute: NERC Source ID: HADGEM3-GC31-HH Topic: Aerosol Sub-Topics: Transpor...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Analysis of two oyster samples where Lotterhos did methylRAD The M2 and M3 samples are here Step1: Genome version Step2: Products
Python Code: bsmaploc="/Applications/bioinfo/BSMAP/bsmap-2.74/" Explanation: Analysis of two oyster samples where Lotterhos did methylRAD The M2 and M3 samples are here: http://owl.fish.washington.edu/nightingales/C_gigas/9_GATCAG_L001_R1_001.fastq.gz http://owl.fish.washington.edu/nightingales/C_gigas/10_TAGCTT_L001_R...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Copyright 2020 The Cirq Developers Step1: Custom gates <table class="tfo-notebook-buttons" align="left"> <td> <a target="_blank" href="https Step3: Standard gates such as Pauli gates...
Python Code: #@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # dist...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Introduction to Channels Channel A Channel gives a means of asynchronous iteration over items coming from some upstream source. A consumer of a Channel uses its next() method to iteratively ...
Python Code: def print_chans(*chans): app.Flo([chan.map(print) for chan in chans]).run() Explanation: Introduction to Channels Channel A Channel gives a means of asynchronous iteration over items coming from some upstream source. A consumer of a Channel uses its next() method to iteratively receive items as the cha...
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Given the following text description, write Python code to implement the functionality described below step by step Description: 关于分辨率 先扫一下盲:http Step1: 两种情况 把resize的image保存到和原image同一目录下 http Step2: 把resize的image保存到同一目录下 另外为了保存到和原image同一目录下,我们要 os.path.split(path) 将path分割成目录和文件名二元组返回。 ``` os.path.split('c
Python Code: import os import glob from PIL import Image def thumbnail_pic(path): a = glob.glob(r'*.jpg') for x in a: name = os.path.join(path, x) im = Image.open(name) im.thumbnail((1136, 640)) print(im.format, im.size, im.mode) im.save(name, 'JPEG') print('Done!') i...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Visualize subject head movement Show how subjects move as a function of time. Step1: Visualize the subject head movements as traces Step2: Or we can visualize them as a continuous field (w...
Python Code: # Authors: Eric Larson <larson.eric.d@gmail.com> # # License: BSD (3-clause) from os import path as op import mne print(__doc__) data_path = op.join(mne.datasets.testing.data_path(verbose=True), 'SSS') pos = mne.chpi.read_head_pos(op.join(data_path, 'test_move_anon_raw.pos')) Explanation: Visualize subject...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Gaussian Process Regression and Classification with Elliptical Slice Sampling Elliptical slice sampling is a variant of slice sampling that allows sampling from distributions with multivaria...
Python Code: import pymc3 as pm import numpy as np import matplotlib.pyplot as plt import seaborn as sns import theano.tensor as tt sns.set(style='white', palette='deep', color_codes=True) %matplotlib inline Explanation: Gaussian Process Regression and Classification with Elliptical Slice Sampling Elliptical slice samp...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Tutorial 07 - Non linear Elliptic problem Keywords Step1: 3. Affine Decomposition For this problem the affine decomposition is straightforward Step2: 4. Main program 4.1. Read the mesh for...
Python Code: from dolfin import * from rbnics import * Explanation: Tutorial 07 - Non linear Elliptic problem Keywords: DEIM, POD-Galerkin 1. Introduction In this tutorial, we consider a non linear elliptic problem in a two-dimensional spatial domain $\Omega=(0,1)^2$. We impose a homogeneous Dirichlet condition on the ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: <h1 id="tocheading">Table of Contents</h1> <div id="toc"></div> Step1: DataFrame basics Difficulty Step2: Task Step3: Task Step4: Task Step5: Task Step6: Task Step7: Task Step8: Task...
Python Code: %%javascript $.getScript('misc/kmahelona_ipython_notebook_toc.js') Explanation: <h1 id="tocheading">Table of Contents</h1> <div id="toc"></div> End of explanation data = {'animal': ['cat', 'cat', 'snake', 'dog', 'dog', 'cat', 'snake', 'cat', 'dog', 'dog'], 'age': [2.5, 3, 0.5, np.nan, 5, 2, 4.5, np...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Using side features Step1: Please re-run the above cell if you are getting any incompatible warnings and errors. Step2: There are a couple of key features here Step3: The layer itself doe...
Python Code: !pip install -q --upgrade tensorflow-datasets Explanation: Using side features: feature preprocessing Learning Objectives Turning categorical features into embeddings. Normalizing continuous features. Processing text features. Build a User and Movie model. Introduction One of the great advantages of using ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Gradient Boosted Models Gradient Boosting does not refer to one particular model, but a versatile framework to optimize many loss functions. It follows the strength in numbers principle by c...
Python Code: import numpy as np import matplotlib.pyplot as plt import pandas as pd %matplotlib inline from sklearn.model_selection import train_test_split from sksurv.datasets import load_breast_cancer from sksurv.ensemble import ComponentwiseGradientBoostingSurvivalAnalysis from sksurv.ensemble import GradientBoostin...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Intro At the end of this lesson, you will be able to write TensorFlow and Keras code to use one of the best models in computer vision. Lesson Step1: Sample Code Choose Images to Work With S...
Python Code: from IPython.display import YouTubeVideo YouTubeVideo('sDG5tPtsbSA', width=800, height=450) Explanation: Intro At the end of this lesson, you will be able to write TensorFlow and Keras code to use one of the best models in computer vision. Lesson End of explanation from os.path import join image_dir = '../...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Demonstration of MCE IRL code & environments This is just tabular environments & vanilla MCE IRL. Step1: IRL on a random MDP Testing both linear reward models & MLP reward models. Step2: S...
Python Code: %matplotlib inline %load_ext autoreload %autoreload 2 import copy import numpy as np import seaborn as sns import pandas as pd import jax.experimental.optimizers as jaxopt import matplotlib.pyplot as plt import scipy import imitation.tabular_irl as tirl import imitation.examples.model_envs as menv sns.set(...
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Given the following text description, write Python code to implement the functionality described below step by step Description: ES-DOC CMIP6 Model Properties - Aerosol MIP Era Step1: Document Authors Set document authors Step2: Document Contributors Specify document contributors Step3: Document Publication Specify...
Python Code: # DO NOT EDIT ! from pyesdoc.ipython.model_topic import NotebookOutput # DO NOT EDIT ! DOC = NotebookOutput('cmip6', 'inpe', 'sandbox-2', 'aerosol') Explanation: ES-DOC CMIP6 Model Properties - Aerosol MIP Era: CMIP6 Institute: INPE Source ID: SANDBOX-2 Topic: Aerosol Sub-Topics: Transport, Emissions...
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Given the following text description, write Python code to implement the functionality described below step by step Description: PyMCEF Quickstart tutorial <br> <br> Prerequisites Install Please install package PyMCEF through either conda or pip Step1: Instead of smoothing, we directly exclude those stocks with extre...
Python Code: import pandas as pd returns = pd.read_json('data/Russel3k_return.json') Explanation: PyMCEF Quickstart tutorial <br> <br> Prerequisites Install Please install package PyMCEF through either conda or pip: <pre> $ conda install -c hzzyyy pymcef $ pip install pymcef </pre> conda packages are available on anaco...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Optimization Exercise 1 Imports Step1: Hat potential The following potential is often used in Physics and other fields to describe symmetry breaking and is often known as the "hat potential...
Python Code: %matplotlib inline import matplotlib.pyplot as plt import numpy as np import scipy.optimize as opt Explanation: Optimization Exercise 1 Imports End of explanation # YOUR CODE HERE def hat(x, a, b): return (-a * x**2) + (b * x**4) assert hat(0.0, 1.0, 1.0)==0.0 assert hat(0.0, 1.0, 1.0)==0.0 assert hat(...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Contents Introduction Block Using the Sorted Neighborhood Blocker Block Tables to Produce a Candidate Set of Tuple Pairs Handling Missing Values Window Size Stable Sort Order Sorted Neighbor...
Python Code: # Import py_entitymatching package import py_entitymatching as em import os import pandas as pd Explanation: Contents Introduction Block Using the Sorted Neighborhood Blocker Block Tables to Produce a Candidate Set of Tuple Pairs Handling Missing Values Window Size Stable Sort Order Sorted Neighborhood Blo...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Plot a univariate distribution along the x axis Step1: Flip the plot by assigning the data variable to the y axis Step2: Plot distributions for each column of a wide-form dataset Step3: U...
Python Code: tips = sns.load_dataset("tips") sns.kdeplot(data=tips, x="total_bill") Explanation: Plot a univariate distribution along the x axis: End of explanation sns.kdeplot(data=tips, y="total_bill") Explanation: Flip the plot by assigning the data variable to the y axis: End of explanation iris = sns.load_dataset(...
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Given the following text description, write Python code to implement the functionality described below step by step Description: A/B Testing with Hierarchical Models Though A/B testing seems simple in that you're just comparing A against B and see which one performs better, but figuring out whether your results mean a...
Python Code: # Website A had 1055 clicks and 28 sign-ups # Website B had 1057 clicks and 45 sign-ups values_A = np.hstack( ( [0] * (1055 - 28), [1] * 28 ) ) values_B = np.hstack( ( [0] * (1057 - 45), [1] * 45 ) ) print(values_A) print(values_B) Explanation: A/B Testing with Hierarchical Models Though A/B testing seem...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Introduction Run this cell to set everything up! Step1: In the next two questions, you'll create a boosted hybrid for the Store Sales dataset by implementing a new Python class. Run this ce...
Python Code: # Setup feedback system from learntools.core import binder binder.bind(globals()) from learntools.time_series.ex5 import * # Setup notebook from pathlib import Path from learntools.time_series.style import * # plot style settings import matplotlib.pyplot as plt import pandas as pd from sklearn.linear_mode...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Copyright 2019 The TensorFlow Authors. Step1: tf.summary の使用箇所を TF 2.0 に移行する <table class="tfo-notebook-buttons" align="left"> <td> <a target="_blank" href="https Step2: TensorFlow 2...
Python Code: #@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # dist...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Title Step1: Create The Data The dataset used in this tutorial is the famous iris dataset. The Iris target data contains 50 samples from three species of Iris, y and four feature variables,...
Python Code: import numpy as np from sklearn.linear_model import LogisticRegression from sklearn import datasets from sklearn.model_selection import train_test_split from sklearn.preprocessing import StandardScaler Explanation: Title: Logistic Regression With L1 Regularization Slug: logistic_regression_with_l1_regulari...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Dirichlet distribution https Step1: Setting up the Code Before we can plot our Dirichlet distributions, we need to do three things Step2: Gamma
Python Code: %matplotlib inline import numpy as np import matplotlib.pyplot as plt import matplotlib.tri as tri from functools import reduce # import seaborn from math import gamma from operator import mul corners = np.array([[0, 0], [1, 0], [0.5,0.75**0.5]]) print(corners) triangle = tri.Triangulation(corners[:, 0], c...
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Given the following text description, write Python code to implement the functionality described below step by step Description: <a href="https Step1: Environment Preparation Install Java 8 Run the cell on the Google Colab to install jdk 1.8. Note Step2: Install BigDL Orca Conda is needed to prepare the Python envir...
Python Code: #@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # d...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Configuring MNE python This tutorial gives a short introduction to MNE configurations. Step1: MNE-python stores configurations to a folder called .mne in the user's home directory, or to Ap...
Python Code: import os.path as op import mne from mne.datasets.sample import data_path fname = op.join(data_path(), 'MEG', 'sample', 'sample_audvis_raw.fif') raw = mne.io.read_raw_fif(fname).crop(0, 10) original_level = mne.get_config('MNE_LOGGING_LEVEL', 'INFO') Explanation: Configuring MNE python This tutorial gives ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: A simple SEA model of two rooms with a dividing wall In this notebook we create a simple SEA model of two rooms divided by a concrete wall. We start by importing some of the modules that are...
Python Code: import numpy as np import pandas as pd pd.set_option('float_format', '{:.2e}'.format) import matplotlib %matplotlib inline Explanation: A simple SEA model of two rooms with a dividing wall In this notebook we create a simple SEA model of two rooms divided by a concrete wall. We start by importing some of t...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Copyright 2019 The TensorFlow Authors. Step1: 理解语言的 Transformer 模型 <table class="tfo-notebook-buttons" align="left"> <td> <a target="_blank" href="https Step2: 设置输入流水线(input pipeline...
Python Code: #@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # dist...
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Given the following text description, write Python code to implement the functionality described below step by step Description: 데이터 파일 읽고 쓰기 특정 파일을 열어 저장된 데이터를 읽거나 특정 데이터를 특정 파일에 저장해야 하는 일이 매우 빈번하게 발생한다. 파일을 열어 저장된 데이터 읽기 읽은 데이터 다루기 Step1: open 함수는 지정된 파일명을 가진 파일을 생성하고 파일의 위치를 리턴한다. 'w' 인자는 쓰기 전용으로 파일을 생성한다는 의미이며 모드...
Python Code: ls f = open('test.txt', 'w') Explanation: 데이터 파일 읽고 쓰기 특정 파일을 열어 저장된 데이터를 읽거나 특정 데이터를 특정 파일에 저장해야 하는 일이 매우 빈번하게 발생한다. 파일을 열어 저장된 데이터 읽기 읽은 데이터 다루기: 계산, 필터링 등등 다룬 결과를 특정 파일에 저장하기 상황 설정: 마트에서 장보기 마트에서 장을 보기 위해 상품 목록을 미리 작성하여 가격을 확인한다. 품목 개수 단가 ----------------- 빵 1개 1.39 토마토 6개 0.26 우유 3개 ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Gaussian Process inference in PyMC3 This is the first step in modelling Species occurrence. The good news is that MCMC works, The bad one is that it's computationally intense. Step1: Simul...
Python Code: # Load Biospytial modules and etc. %matplotlib inline import sys sys.path.append('/apps/external_plugins/spystats/') import django django.setup() import pandas as pd import matplotlib.pyplot as plt ## Use the ggplot style plt.style.use('ggplot') import numpy as np from spystats import tools Explanation: Ga...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Dead time corrections Daniel FY, Jeffrey AF. Mean and variance of single photon counting with deadtime. Physics in Medicine & Biology. 2000;45(7) Step1: Equation 2 gives the expectation and...
Python Code: %matplotlib inline from pprint import pprint import matplotlib import matplotlib.pyplot as plt import numpy as np import pandas as pd import pymc3 as mc import spacepy.toolbox as tb import spacepy.plot as spp import tqdm from scipy import stats import seaborn as sns sns.set(font_scale=1.5) # matplotlib.pyp...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Multi-armed bandit as a Markov decision process Let's model the Bernouilli multi-armed bandit. The Bernoulli MBA is an $N$-armed bandit where each arm gives binary rewards according to some ...
Python Code: import itertools import numpy as np from pprint import pprint def sorted_values(dict_): return [dict_[x] for x in sorted(dict_)] def solve_bmab_value_iteration(N_arms, M_trials, gamma=1, max_iter=10, conv_crit = .01): util = {} # Initialize every state to uti...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Title Step1: Load Iris Flower Dataset Step2: Standardize Features Step3: Create Logistic Regression Step4: Train Logistic Regression Step5: Create Previously Unseen Observation Step6: ...
Python Code: # Load libraries from sklearn.linear_model import LogisticRegression from sklearn import datasets from sklearn.preprocessing import StandardScaler Explanation: Title: Logistic Regression Slug: logistic_regression Summary: How to train a logistic regression in scikit-learn. Date: 2017-09-21 12:00 Category: ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Copyright 2018 The TensorFlow Authors. Step1: 첫 번째 신경망 훈련하기 Step2: 패션 MNIST 데이터셋 임포트하기 10개의 범주(category)와 70,000개의 흑백 이미지로 구성된 패션 MNIST 데이터셋을 사용하겠습니다. 이미지는 해상도(28x28 픽셀)가 낮고 다음처럼 개별 옷 품목을 ...
Python Code: #@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # dist...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Maskbits QA in dr8c Step1: Check the masking Step2: All DUPs should be in an LSLGA blob. Step3: 1) Find all bright Gaia stars. 2) Make sure the magnitude limits are correct. 3) Make sure ...
Python Code: import os, time import numpy as np import fitsio from glob import glob import matplotlib.pyplot as plt from astropy.table import vstack, Table, hstack Explanation: Maskbits QA in dr8c End of explanation MASKBITS = dict( NPRIMARY = 0x1, # not PRIMARY BRIGHT = 0x2, SATUR_G = 0x4, S...
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Given the following text description, write Python code to implement the functionality described below step by step Description: whatever-forever Create reusable, higher-order functions using declarative syntaxes in Python. Installation pip install whatever-forever Basic Usage Chaining <small>in Python</small> Step1: ...
Python Code: from whatever import * __my_chain = __x(5).range.map(lambda x: x+3).list __my_chain Explanation: whatever-forever Create reusable, higher-order functions using declarative syntaxes in Python. Installation pip install whatever-forever Basic Usage Chaining <small>in Python</small> End of explanation from ran...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Plot multiple volcanic data sets from the FITS (FIeld Time Series) database In this notebook we will plot data of multiple types from volcano observatory instruments using data from the FITS...
Python Code: # Import packages import pandas as pd import numpy as np import matplotlib.pyplot as plt # Define functions def build_query(site, data_type): ''' Take site code and data type and generate a FITS API query for an observations csv file ''' # Ensure parameters are in the correct form...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Feature importances with forests of trees This examples shows the use of forests of trees to evaluate the importance of features on an artificial classification task. The red bars are the fe...
Python Code: print(__doc__) import numpy as np import matplotlib.pyplot as plt import pandas as pd from sklearn.datasets import make_classification from sklearn.ensemble import ExtraTreesClassifier Explanation: Feature importances with forests of trees This examples shows the use of forests of trees to evaluate the imp...
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Given the following text description, write Python code to implement the functionality described below step by step Description: The Traveling Salesman problem Names of group members // put your names here! Goals of this assignment The main goal of this assignment is to use Monte Carlo methods to find the shortest pat...
Python Code: import numpy as np %matplotlib inline import matplotlib.pyplot as plt from IPython.display import display, clear_output def calc_total_distance(table_of_distances, city_order): ''' Calculates distances between a sequence of cities. Inputs: N x N table containing distances between each pair...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Following the theano Tutorial Step1: Baby Steps - Algebra Adding two Scalars Step2: "Prefer constructors like matrix, vector and scalar to dmatrix, dvector and dscalar because the former w...
Python Code: %matplotlib inline from theano import * import theano.tensor as T Explanation: Following the theano Tutorial End of explanation import numpy from theano import function x = T.dscalar('x') y = T.dscalar('y') z = x+y f = function([x,y],z) print type(x), type(y), type(z), type(f) # good to know what these ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Iterative Maximum Likelihood Estimation (iMLE) Shahnawaz Ahmed, Chalmers University of Technology, Sweden Email Step1: Displacement operation The measurements for determining optical quantu...
Python Code: # imports import numpy as np from qutip import Qobj, rand_dm, fidelity, displace, qdiags, qeye, expect from qutip.states import coherent, coherent_dm, thermal_dm, fock_dm from qutip.random_objects import rand_dm from qutip.visualization import plot_wigner, hinton, plot_wigner_fock_distribution from qutip....
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Given the following text description, write Python code to implement the functionality described below step by step Description: Step1: Language Translation In this project, you’re going to take a peek into the realm of neural network machine translation. You’ll be training a sequence to sequence model on a dataset o...
Python Code: DON'T MODIFY ANYTHING IN THIS CELL import helper import problem_unittests as tests source_path = 'data/small_vocab_en' target_path = 'data/small_vocab_fr' source_text = helper.load_data(source_path) target_text = helper.load_data(target_path) Explanation: Language Translation In this project, you’re going ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Advent of Code 2017 December 1st [Given] a sequence of digits (your puzzle input) and find the sum of all digits that match the next digit in the list. The list is circular, so the digit aft...
Python Code: from notebook_preamble import J, V, define Explanation: Advent of Code 2017 December 1st [Given] a sequence of digits (your puzzle input) and find the sum of all digits that match the next digit in the list. The list is circular, so the digit after the last digit is the first digit in the list. For example...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Step1: Image Classification In this project, you'll classify images from the CIFAR-10 dataset. The dataset consists of airplanes, dogs, cats, and other objects. You'll preprocess the images...
Python Code: DON'T MODIFY ANYTHING IN THIS CELL THAT IS BELOW THIS LINE from urllib.request import urlretrieve from os.path import isfile, isdir from tqdm import tqdm import problem_unittests as tests import tarfile cifar10_dataset_folder_path = 'cifar-10-batches-py' # Use Floyd's cifar-10 dataset if present floyd_cifa...
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Given the following text description, write Python code to implement the functionality described below step by step Description: ====================================================================== Compute source power spectral density (PSD) of VectorView and OPM data ================================================...
Python Code: # Authors: Denis Engemann <denis.engemann@gmail.com> # Luke Bloy <luke.bloy@gmail.com> # Eric Larson <larson.eric.d@gmail.com> # # License: BSD (3-clause) import os.path as op from mne.filter import next_fast_len import mne print(__doc__) data_path = mne.datasets.opm.data_path() subject =...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Evaluating Services Sentiment analysis plugins can also be evaluated on a series of pre-defined datasets. This can be done in three ways Step1: Programmatically (expert) A third option is t...
Python Code: import requests from IPython.display import Code endpoint = 'http://senpy.gsi.upm.es/api' res = requests.get(f'{endpoint}/evaluate', params={"algo": "sentiment-vader", "dataset": "vader,sts", 'outformat': 'json-ld' ...
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Given the following text problem statement, write Python code to implement the functionality described below in problem statement Problem: In pandas, how do I replace &AMP; with '&' from all columns where &AMP could be in any position in a string?Then please evaluate this expression.
Problem: import pandas as pd df = pd.DataFrame({'A': ['1 &AMP; 1', 'BB', 'CC', 'DD', '1 &AMP; 0'], 'B': range(5), 'C': ['0 &AMP; 0'] * 5}) def g(df): for i in df.index: for col in list(df): if type(df.loc[i, col]) == str: if '&AMP;' in df.loc[i, col]: df.loc[i...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements; and to You under the Apache License, Version 2.0. RNN for Character Level Language Modelin...
Python Code: from __future__ import division from __future__ import print_function from future import standard_library standard_library.install_aliases() from builtins import zip from builtins import range from builtins import object from past.utils import old_div import pickle as pickle import numpy as np import argpa...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Предобработка данных и логистическая регрессия для задачи бинарной классификации Programming assignment В задании вам будет предложено ознакомиться с основными техниками предобработки данных...
Python Code: import pandas as pd import numpy as np import matplotlib from matplotlib import pyplot as plt matplotlib.style.use('ggplot') %matplotlib inline Explanation: Предобработка данных и логистическая регрессия для задачи бинарной классификации Programming assignment В задании вам будет предложено ознакомиться с ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: How data scientists use BigQuery This notebook accompanies the presentation "Machine Learning and Bayesian Statistics in minutes Step1: But is it right, though? What's with the weird hump ...
Python Code: %%bigquery df WITH rawnumbers AS ( SELECT departure_delay, COUNT(1) AS num_flights, COUNTIF(arrival_delay < 15) AS num_ontime FROM `bigquery-samples.airline_ontime_data.flights` GROUP BY departure_delay HAVING num_flights > 100 ), totals AS ( SELECT SUM(num_flights) AS tot_flights, SUM(nu...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Analyze and Report Current Plate Analyze and report a Cell Painting screening plate in 384 format Step1: Report Current Plate with Existing Data Report a Cell Painting screening plate in 38...
Python Code: DATE = "170530" # "170704", "170530" PLATE = "SI0012" CONF = "conf170511mpc" # "conf170623mpc", "conf170511mpc" QUADRANTS = [1] # [1, 2, 3, 4] WRITE_PKL = False UPDATE_SIMILAR = False UPDATE_DATASTORE = False for quadrant in QUADRANTS: SRC_DIR = ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Symbulate Lab 1 - Probability Spaces This Jupyter notebook provides a template for you to fill in. Complete the parts as indicated. To run a cell, hold down SHIFT and hit ENTER. In this la...
Python Code: from symbulate import * %matplotlib inline Explanation: Symbulate Lab 1 - Probability Spaces This Jupyter notebook provides a template for you to fill in. Complete the parts as indicated. To run a cell, hold down SHIFT and hit ENTER. In this lab you will use the Python package Symbulate. You should have...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Generate synthetic training data The goal for this file is to generate some synthetic data for our sample model to train on. Step1: Power ups These are the power ups that are available to u...
Python Code: import pandas as pd import numpy as np import random Explanation: Generate synthetic training data The goal for this file is to generate some synthetic data for our sample model to train on. End of explanation power_ups = ['time_machine', 'coin_magnet', 'coin_multiplier', 'sparky_armor', 'extra_life', 'hea...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Impedance Matching Introduction The general problem is illustrated by the figure below Step1: Matching with Lumped Elements To begin, let's assume that the matching network is lossless and ...
Python Code: import numpy as np import matplotlib.pyplot as plt import skrf as rf rf.stylely() Explanation: Impedance Matching Introduction The general problem is illustrated by the figure below: a generator with an internal impedance $Z_S$ delivers a power to a passive load $Z_L$, through a 2-ports matching network. T...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Atmospheres & Passbands Setup Let's first make sure we have the latest version of PHOEBE 2.1 installed. (You can comment out this line if you don't use pip for your installation or don't wan...
Python Code: !pip install -I "phoebe>=2.1,<2.2" Explanation: Atmospheres & Passbands Setup Let's first make sure we have the latest version of PHOEBE 2.1 installed. (You can comment out this line if you don't use pip for your installation or don't want to update to the latest release). End of explanation %matplotlib in...
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Given the following text description, write Python code to implement the functionality described below step by step Description: ES-DOC CMIP6 Model Properties - Ocnbgchem MIP Era Step1: Document Authors Set document authors Step2: Document Contributors Specify document contributors Step3: Document Publication Speci...
Python Code: # DO NOT EDIT ! from pyesdoc.ipython.model_topic import NotebookOutput # DO NOT EDIT ! DOC = NotebookOutput('cmip6', 'mohc', 'sandbox-3', 'ocnbgchem') Explanation: ES-DOC CMIP6 Model Properties - Ocnbgchem MIP Era: CMIP6 Institute: MOHC Source ID: SANDBOX-3 Topic: Ocnbgchem Sub-Topics: Tracers. Prop...
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Given the following text description, write Python code to implement the functionality described below step by step Description: <style> @font-face { font-family Step1: One nice feature of ipython notebooks is it's easy to make small changes to code and then re-execute quickly, to see how things change. For examp...
Python Code: import pandas as pd features_df = pd.DataFrame.from_csv("well_data.csv") labels_df = pd.DataFrame.from_csv("well_labels.csv") print( labels_df.head() ) Explanation: <style> @font-face { font-family: CharisSILW; src: url(files/CharisSIL-R.woff); } @font-face { font-family: CharisSILW; font-st...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Mengukur Downside Risk dengan VaR dan CVaR Seperti kita bahas dalam studi sebelumnya, distribusi dari keuntungan biasanya bukanlah normal, sehingga pemakaian standar deviasi kurang tepat kar...
Python Code: import numpy as np import pandas as pd np.random.seed(0) returns = pd.Series(np.random.normal(0, 0.10, 100)).sort_values() returns.values Explanation: Mengukur Downside Risk dengan VaR dan CVaR Seperti kita bahas dalam studi sebelumnya, distribusi dari keuntungan biasanya bukanlah normal, sehingga pemakaia...
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Given the following text description, write Python code to implement the functionality described below step by step Description: E2.1 Shortest Paths and Cycles Step1: a) How many nodes and edges does G have? Step2: b) How many cycles does the cycle basis of the graph contain? How Many edges does the longest cycle i...
Python Code: G=nx.read_graphml("../data/visualization/small_graph.xml", node_type=int)#Load the graph Explanation: E2.1 Shortest Paths and Cycles End of explanation nodes = G.number_of_nodes() edges = G.number_of_edges() print("b) The graph has %d nodes and %d edges\n"%(nodes,edges)) Explanation: a) How many nodes and...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Clase 11 Step1: 2. Uso de Pandas para descargar datos de precios de cierre Una vez cargados los paquetes, es necesario definir los tickers de las acciones que se usarán, la fuente de descar...
Python Code: #importar los paquetes que se van a usar import pandas as pd import numpy as np import datetime from datetime import datetime import scipy.stats as stats import scipy as sp import matplotlib.pyplot as plt import seaborn as sns import sklearn.covariance as skcov import cvxopt as opt from cvxopt import blas,...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Find distribution of local maxima in a Gaussian Random Field In this notebook, I evaluate different known distributions for local maxima in a Gaussian Random Field. I followed several steps...
Python Code: % matplotlib inline import os import numpy as np import nibabel as nib from nipy.labs.utils.simul_multisubject_fmri_dataset import surrogate_3d_dataset import nipy.algorithms.statistics.rft as rft from __future__ import print_function, division import math import matplotlib.pyplot as plt import palettable....
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Given the following text problem statement, write Python code to implement the functionality described below in problem statement Problem: Input example:
Problem: import numpy as np a = np.array([[0, 1], [2, 1], [4, 8]]) mask = (a.min(axis=1,keepdims=1) == a)
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Given the following text description, write Python code to implement the functionality described below step by step Description: Non-Linear Time History Analysis (NLTHA) on Single Degree of Freedom (SDOF) Oscillators In this method, a single degree of freedom (SDOF) model of each structure is subjected to non-linear t...
Python Code: from rmtk.vulnerability.common import utils from rmtk.vulnerability.derivation_fragility.NLTHA_on_SDOF import NLTHA_on_SDOF from rmtk.vulnerability.derivation_fragility.NLTHA_on_SDOF.read_pinching_parameters import read_parameters %matplotlib inline Explanation: Non-Linear Time History Analysis (NLTHA) on ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: HTML Introduction Unit 17, Lecture 2 Numerical Methods and Statistics Prof. Andrew White, April 21, 2016 Websites are made using three core technologies Step1: Links Step2: Content Arrange...
Python Code: %%HTML <h3> A level-3 (smaller) heading</h3> <p> This is a paragraph about HTML. HTML surprisingly only has about 5 elements you need to know: </p> <ul> <li> Paragraphs</li> <li> breaks </li> <li> lists </li> <li> links </li> <li> images </li> <li> divs <...
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Given the following text description, write Python code to implement the functionality described below step by step Description: <!--BOOK_INFORMATION--> <img align="left" style="padding-right Step1: Suppose we want to access three different elements. We could do it like this Step2: Alternatively, we can pass a singl...
Python Code: import numpy as np rand = np.random.RandomState(42) x = rand.randint(100, size=10) print(x) Explanation: <!--BOOK_INFORMATION--> <img align="left" style="padding-right:10px;" src="figures/PDSH-cover-small.png"> This notebook contains an excerpt from the Python Data Science Handbook by Jake VanderPlas; the ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Contrast Effects Authors Ndèye Gagnessiry Ndiaye and Christin Seifert License This work is licensed under the Creative Commons Attribution 3.0 Unported License https Step1: The following im...
Python Code: import numpy as np import matplotlib.pyplot as plt Explanation: Contrast Effects Authors Ndèye Gagnessiry Ndiaye and Christin Seifert License This work is licensed under the Creative Commons Attribution 3.0 Unported License https://creativecommons.org/licenses/by/3.0/ This notebook illustrates 3 contrast e...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Simulation of a Noddy history and visualisation of output This example shows how the module pynoddy.history can be used to compute the model, and how simple visualisations can be generated w...
Python Code: from IPython.core.display import HTML css_file = 'pynoddy.css' HTML(open(css_file, "r").read()) %matplotlib inline # Basic settings import sys, os import subprocess sys.path.append("../..") # Now import pynoddy import pynoddy import importlib importlib.reload(pynoddy) import pynoddy.output import pynoddy.h...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Single Star with Spots Setup Let's first make sure we have the latest version of PHOEBE 2.3 installed (uncomment this line if running in an online notebook session such as colab). Step1: As...
Python Code: #!pip install -I "phoebe>=2.3,<2.4" Explanation: Single Star with Spots Setup Let's first make sure we have the latest version of PHOEBE 2.3 installed (uncomment this line if running in an online notebook session such as colab). End of explanation import phoebe from phoebe import u # units import numpy as ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: How to train a Keras model on TFRecord files Author Step1: We want a bigger batch size as our data is not balanced. Step2: Load the data Step3: Decoding the data The images have to be con...
Python Code: import tensorflow as tf from functools import partial import matplotlib.pyplot as plt try: tpu = tf.distribute.cluster_resolver.TPUClusterResolver.connect() print("Device:", tpu.master()) strategy = tf.distribute.TPUStrategy(tpu) except: strategy = tf.distribute.get_strategy() print("Number...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Introduction In this notebook, we will show you how to evaluate the levenshtein ration between the training phrases of two intents. Prerequisites Ensure you have a GCP Service Account key wi...
Python Code: # If you haven't already, make sure you install the `dfcx-scrapi` library !pip install dfcx-scrapi Explanation: Introduction In this notebook, we will show you how to evaluate the levenshtein ration between the training phrases of two intents. Prerequisites Ensure you have a GCP Service Account key with th...
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Given the following text description, write Python code to implement the functionality described below step by step Description: PyBroMo 4. Two-state dynamics - Static smFRET simulation <small><i> This notebook is part of <a href="http Step1: Define populations We assume a $\gamma = 0.7$ and two populations, one with...
Python Code: %matplotlib inline from pathlib import Path import numpy as np import tables import matplotlib.pyplot as plt import seaborn as sns import pybromo as pbm import phconvert as phc print('Numpy version:', np.__version__) print('PyTables version:', tables.__version__) print('PyBroMo version:', pbm.__version__) ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Table of Contents <p><div class="lev1 toc-item"><a href="#Summary" data-toc-modified-id="Summary-1"><span class="toc-item-num">1&nbsp;&nbsp;</span>Summary</a></div><div class="lev1 toc-item"...
Python Code: %run ../../code/version_check.py Explanation: Table of Contents <p><div class="lev1 toc-item"><a href="#Summary" data-toc-modified-id="Summary-1"><span class="toc-item-num">1&nbsp;&nbsp;</span>Summary</a></div><div class="lev1 toc-item"><a href="#Version-Control" data-toc-modified-id="Version-Control-2"><s...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Graphing catalog numbers vs rank Are collection codes typically sequential? Let's graph only numeric codes (can do work to conver alpha-numeric codes to based 10 numeric) vs their rank. If c...
Python Code: import pyspark.sql.functions as sql import pyspark.sql.types as types idb_df_version = "20170130" idb_df = sqlContext.read.parquet("/guoda/data/idigbio-{0}.parquet".format(idb_df_version)) idb_df.count() Explanation: Graphing catalog numbers vs rank Are collection codes typically sequential? Let's graph on...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Time Course Transcriptomics for Cu-Induced transition in 5GB1 Step1: Aside, how to keep only columns with FM40, and FM34 Step2: identifying the column index in order to remove unnecessary ...
Python Code: import pandas as pd import natsort as ns #3rd party package for natural sorting import re data = pd.read_csv("5G_counts.tsv", sep = "\t") columns_list = list(range(0,9)) + list(range(20,42)) #creating a list of columns that I care about (see below) data_1 = data.iloc[:, columns_list] #taking only 0-8 and ...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Discretizations Here we show how different discretizations work within MasterMSM. An important note is that not all discretizations will be sensible for all systems, but as usual the alanine...
Python Code: %load_ext autoreload %matplotlib inline import math import numpy as np import matplotlib.pyplot as plt import seaborn as sns sns.set(style="ticks", color_codes=True, font_scale=1.5) sns.set_style({"xtick.direction": "in", "ytick.direction": "in"}) Explanation: Discretizations Here we show how different dis...
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Given the following text description, write Python code to implement the functionality described below step by step Description: Intro to tensor flow Basic models over MNIST dataset Linear model NN one layer node Convolutional model Tensoboard example Save & load models Step1: Get the MNIST data Step2: Fist model St...
Python Code: # Header # Basic libraries & options from __future__ import print_function #Basic libraries import numpy as np import tensorflow as tf print('Tensorflow version: ', tf.__version__) #Show images import matplotlib.pyplot as plt %matplotlib inline # plt configuration plt.rcParams['figure.figsize'] = (10, 10) ...