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anurag-raapid
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mt-samples

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train · 96 rows

text stringlengths 1.18k 7.92k	tokens listlengths 231 1.55k	entity listlengths 19 367	filename stringlengths 15 30
Sample Type / Medical Specialty: General Medicine Sample Name: Disseminated Intravascular Coagulation Description: Disseminated intravascular coagulation and Streptococcal pneumonia with sepsis. Patient presented with symptoms of pneumonia and developed rapid sepsis and respiratory failure requiring intubation. (Medica...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "General", "Medicine", "\n", "Sample", "Name", ":", "Disseminated", "Intravascular", "Coagulation", "\n", "Description", ":", "Disseminated", "intravascular", "coagulation", "and", "Streptococcal", "pneumonia", "with...	[ { "char_end": 101, "char_start": 63, "text": "Disseminated Intravascular Coagulation", "token_end": 15, "token_start": 12, "type": "problem" }, { "char_end": 153, "char_start": 115, "text": "Disseminated intravascular coagulation", "token_end": 21, "token_start": 18, ...	train/104_20210112211707
Sample Type / Medical Specialty: Discharge Summary Sample Name: Speech Therapy - Discharge Summary - 2 Description: The patient was referred for outpatient skilled speech therapy, secondary to right hemisphere disorder, status post stroke. The patient attended nine outpatient skilled speech therapy sessions. (Medical T...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "Discharge", "Summary", "\n", "Sample", "Name", ":", "Speech", "Therapy", "-", "Discharge", "Summary", "-", "2", "\n", "Description", ":", "The", "patient", "was", "referred", "for", "outpatient", "skilled", ...	[ { "char_end": 178, "char_start": 145, "text": "outpatient skilled speech therapy", "token_end": 31, "token_start": 27, "type": "treatment" }, { "char_end": 218, "char_start": 193, "text": "right hemisphere disorder", "token_end": 37, "token_start": 34, "type": "pr...	train/108_20210112211708
Sample Type / Medical Specialty: Discharge Summary Sample Name: Death Summary - 1 Description: Death summary of patient with advanced non-small cell lung carcinoma with left malignant pleural effusion status post chest tube insertion status post chemical pleurodesis. (Medical Transcription Sample Report) The patient pr...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "Discharge", "Summary", "\n", "Sample", "Name", ":", "Death", "Summary", "-", "1", "\n", "Description", ":", "Death", "summary", "of", "patient", "with", "advanced", "non", "-", "small", "cell", "lung", "...	[ { "char_end": 163, "char_start": 134, "text": "non-small cell lung carcinoma", "token_end": 31, "token_start": 25, "type": "problem" }, { "char_end": 153, "char_start": 149, "text": "lung", "token_end": 30, "token_start": 29, "type": "bodyloc" }, { "char_e...	train/115_20210112211709
Sample Type / Medical Specialty: Discharge Summary Sample Name: Post Thyroidectomy - Discharge Summary Description: Symptomatic thyroid goiter. Total thyroidectomy. (Medical Transcription Sample Report) ADMISSION DIAGNOSIS: Symptomatic thyroid goiter. DISCHARGE DIAGNOSIS: Symptomatic thyroid goiter. PROCEDURE PERFORMED...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "Discharge", "Summary", "\n", "Sample", "Name", ":", "Post", "Thyroidectomy", "-", "Discharge", "Summary", "\n", "Description", ":", "Symptomatic", "thyroid", "goiter", ".", "Total", "thyroidectomy", ".", "\n",...	[ { "char_end": 82, "char_start": 69, "text": "Thyroidectomy", "token_end": 14, "token_start": 13, "type": "treatment" }, { "char_end": 142, "char_start": 116, "text": "Symptomatic thyroid goiter", "token_end": 23, "token_start": 20, "type": "problem" }, { "...	train/116_20210112211709
Sample Type / Medical Specialty: General Medicine Sample Name: Anemia - Consult Description: Refractory anemia that is transfusion dependent. At this time, he has been admitted for anemia with hemoglobin of 7.1 and requiring transfusion. (Medical Transcription Sample Report) DIAGNOSIS: Refractory anemia that is transfu...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "General", "Medicine", "\n", "Sample", "Name", ":", "Anemia", "-", "Consult", "\n", "Description", ":", "Refractory", "anemia", "that", "is", "transfusion", "dependent", ".", "At", "this", "time", ",", "he"...	[ { "char_end": 69, "char_start": 63, "text": "Anemia", "token_end": 13, "token_start": 12, "type": "problem" }, { "char_end": 110, "char_start": 93, "text": "Refractory anemia", "token_end": 20, "token_start": 18, "type": "problem" }, { "char_end": 140, ...	train/11_20210604143808_Hayden
Sample Type/Medical Specialty : General Medicine Sample Name : Normal Female ROS Template Description : Normal female review of systems template . Negative for fever , weight change , fatigue , or aching . ( Medical Transcription Sample Report ) CONSTITUTIONAL : Normal ; negative for fever , weight change , fat...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "\n", "General", "Medicine", "\n", "Sample", "Name", ":", "Normal", "\n", "Female", "ROS", "\n", "Template", "Description", ":", "\n", "Normal", "female", "review", "of", "systems", "template", ".", "\n ", ...	[ { "char_end": 161, "char_start": 153, "text": "Negative", "token_end": 31, "token_start": 30, "type": "negation" }, { "char_end": 171, "char_start": 166, "text": "fever", "token_end": 33, "token_start": 32, "type": "problem" }, { "char_end": 187, "char...	train/11_20210610044406_Isra
Sample Type / Medical Specialty: Discharge Summary Sample Name: Neonatal Discharge Summary - 1 Description: Respiratory distress syndrome, intrauterine growth restriction, thrombocytopenia, hypoglycemia, retinal immaturity. The baby is an ex-32 weeks small for gestational age infant with birth weight 1102. (Medical Tra...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "Discharge", "Summary", "\n", "Sample", "Name", ":", "Neonatal", "Discharge", "Summary", "-", "1", "\n", "Description", ":", "Respiratory", "distress", "syndrome", ",", "intrauterine", "growth", "restriction", ...	[ { "char_end": 137, "char_start": 108, "text": "Respiratory distress syndrome", "token_end": 23, "token_start": 20, "type": "problem" }, { "char_end": 170, "char_start": 139, "text": "intrauterine growth restriction", "token_end": 27, "token_start": 24, "type": "pr...	train/128_20210112211711
Sample Type / Medical Specialty: General Medicine Sample Name: Normal Female ROS Template Description: Normal female review of systems template. Negative for fever, weight change, fatigue, or aching. (Medical Transcription Sample Report) CONSTITUTIONAL: Normal; negative for fever, weight change, fatigue, or aching. HEE...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "General", "Medicine", "\n", "Sample", "Name", ":", "Normal", "Female", "ROS", "Template", "\n", "Description", ":", "Normal", "female", "review", "of", "systems", "template", ".", "Negative", "for", "fever",...	[ { "char_end": 153, "char_start": 145, "text": "Negative", "token_end": 27, "token_start": 26, "type": "negation" }, { "char_end": 163, "char_start": 158, "text": "fever", "token_end": 29, "token_start": 28, "type": "problem" }, { "char_end": 178, "char...	train/134_20210112211711
Sample Type / Medical Specialty: Discharge Summary Sample Name: Neck Pain - Discharge Summary Description: Neck pain with right upper extremity radiculopathy and cervical spondylosis with herniated nucleus pulposus C4-C5, C5-C6, and C6-C7 with stenosis. (Medical Transcription Sample Report) ADMISSION DIAGNOSES 1. Neck ...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "Discharge", "Summary", "\n", "Sample", "Name", ":", "Neck", "Pain", "-", "Discharge", "Summary", "\n", "Description", ":", "Neck", "pain", "with", "right", "upper", "extremity", "radiculopathy", "and", "cerv...	[ { "char_end": 73, "char_start": 64, "text": "Neck Pain", "token_end": 14, "token_start": 12, "type": "problem" }, { "char_end": 68, "char_start": 64, "text": "Neck", "token_end": 13, "token_start": 12, "type": "bodyloc" }, { "char_end": 116, "char_star...	train/138_20210112211712
Sample Type / Medical Specialty: General Medicine Sample Name: Normal Male Exam Template - 4 Description: An example/template for a routine normal male physical exam. (Medical Transcription Sample Report) VITAL SIGNS: Blood pressure , pulse , respirations , temperature . GENERAL APPEARANCE: Alert and in no apparent...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "General", "Medicine", "\n", "Sample", "Name", ":", "Normal", "Male", "Exam", "Template", "-", "4", "\n", "Description", ":", "An", "example", "/", "template", "for", "a", "routine", "normal", "male", "ph...	[ { "char_end": 165, "char_start": 130, "text": "a routine normal male physical exam", "token_end": 32, "token_start": 26, "type": "test" }, { "char_end": 216, "char_start": 205, "text": "VITAL SIGNS", "token_end": 43, "token_start": 41, "type": "test" }, { ...	train/141_20210112211712
Sample Type / Medical Specialty: General Medicine Sample Name: Air Under Diaphragm - Consult Description: Possible free air under the diaphragm. On a chest x-ray for what appeared to be shortness of breath she was found to have what was thought to be free air under the right diaphragm. No intra-abdominal pathology. (Me...	[ "Sample", "Type", "/", "Medical", "Specialty", ":", "General", "Medicine", "\n", "Sample", "Name", ":", "Air", "Under", "Diaphragm", "-", "Consult", "\n", "Description", ":", "Possible", "free", "air", "under", "the", "diaphragm", ".", "On", "a", "chest", ...	[ { "char_end": 114, "char_start": 106, "text": "Possible", "token_end": 21, "token_start": 20, "type": "uncertain" }, { "char_end": 143, "char_start": 115, "text": "free air under the diaphragm", "token_end": 26, "token_start": 21, "type": "problem" }, { "c...	train/147_20210112211713

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Collection including anurag-raapid/mt-samples

Clinical NER Dataset

Publically available clinical NER datasets • 4 items • Updated Mar 5 • 1