Datasets:

araag2
/

TREC_Clinicial-Decision-Support

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19	[ { "role": "system", "content": "You are a medical expert tasked with performing clinical decision support (CDS) to a doctor, by reading a Patient Description and a article of biomedical literature, determining wether that article is relevant to the Patient Description and the Question. \n\nYour task is to e...	[ { "role": "assistant", "content": "Answer: not relevant" } ]	not relevant
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21	[ { "role": "system", "content": "You are a medical expert tasked with performing clinical decision support (CDS) to a doctor, by reading a Patient Description and a article of biomedical literature, determining wether that article is relevant to the Patient Description and the Question. \n\nYour task is to e...	[ { "role": "assistant", "content": "Answer: not relevant" } ]	not relevant
22	[ { "role": "system", "content": "You are a medical expert tasked with performing clinical decision support (CDS) to a doctor, by reading a Patient Description and a article of biomedical literature, determining wether that article is relevant to the Patient Description and the Question. \n\nYour task is to e...	[ { "role": "assistant", "content": "Answer: not relevant" } ]	not relevant
23	[ { "role": "system", "content": "You are a medical expert tasked with performing clinical decision support (CDS) to a doctor, by reading a Patient Description and a article of biomedical literature, determining wether that article is relevant to the Patient Description and the Question. \n\nYour task is to e...	[ { "role": "assistant", "content": "Answer: not relevant" } ]	not relevant
24	[ { "role": "system", "content": "You are a medical expert tasked with performing clinical decision support (CDS) to a doctor, by reading a Patient Description and a article of biomedical literature, determining wether that article is relevant to the Patient Description and the Question. \n\nYour task is to e...	[ { "role": "assistant", "content": "Answer: not relevant" } ]	not relevant

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TREC Clinical Decision Support (2014, 2015 and 2016)

Dataset Description

	Links
Homepage:	TREC
Paper:	2014 / 2015 / 2016
Contact (Original Authors):	Kirk Roberts (Kirk.Roberts@uth.tmc.edu )
Contact (Curator):	Artur Guimarães (artur.guimas@gmail.com)

Dataset Summary

This track focused on clinicians looking for evidence-based full-text literature to support diagnosis, treatment, and testing decisions

Data Instances

Source Format

{
    "query_id":"1",
    "type":"diagnosis",
    "note":"\n   78 M w\/ pmh of CABG in early [**Month (only) 3**] at [**Hospital6 4406**]\n   (transferred to nursing home for rehab on [**12-8**] after several falls out\n   of bed.) He was then readmitted to [**Hospital6 1749**] on\n   [**3120-12-11**] after developing acute pulmonary edema\/CHF\/unresponsiveness?.\n   There was a question whether he had a small MI; he reportedly had a\n   small NQWMI. He improved with diuresis and was not intubated. \n   .\n   Yesterday, he was noted to have a melanotic stool earlier this evening\n   and then approximately 9 loose BM w\/ some melena and some frank blood\n   just prior to transfer, unclear quantity.\n    ",
    "description":"78 M transferred to nursing home for rehab after CABG. Reportedly readmitted with a small NQWMI. Yesterday, he was noted to have a melanotic stool and then today he had approximately 9 loose BM w\/ some melena and some frank blood just prior to transfer, unclear quantity.",
    "summary":"A 78 year old male presents with frequent stools and melena.",
    "doc_id":"1036067",
    "relevance":0,
    "iteration":"0"
}

Data Fields

Source Format

TO:DO

Data Splits

TO:DO

Additional Information

Dataset Curators

Original Paper

Kirk Roberts - School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
Dina Demner-Fushman - Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
Ellen M. Voorhees - Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD
William R. Hersh - Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR

Huggingface Curator

Artur Guimarães (artur.guimas@gmail.com) - INESC-ID / University of Lisbon - Instituto Superior Técnico

Licensing Information

CC BY-SA 4.0

Citation Information

@inproceedings{simpson2014overview,
  title={Overview of the TREC 2014 Clinical Decision Support Track.},
  author={Simpson, Matthew S and Voorhees, Ellen M and Hersh, William R},
  booktitle={TREC},
  year={2014}
}

@inproceedings{gobeill2015exploiting,
  title={Exploiting incoming and outgoing citations for improving Information Retrieval in the TREC 2015 Clinical Decision Support Track},
  author={Gobeill, Julien and Gaudinat, Arnaud and Ruch, Patrick},
  booktitle={Proceedings of The 24th Text REtrieval Conference (TREC 2015)},
  year={2015},
  organization={17-20 November 2015}
}

@inproceedings{roberts2016overview,
  title={Overview of the TREC 2016 Clinical Decision Support Track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R},
  booktitle={25th Text REtrieval Conference, TREC 2016},
  year={2016}
}

@article{nguyen2018benchmarking,
  title={Benchmarking clinical decision support search},
  author={Nguyen, Vincent and Karimi, Sarvnaz and Falamaki, Sara and Paris, Cecile},
  journal={arXiv preprint arXiv:1801.09322},
  year={2018}
}

10.6028/NIST.SP.500‑321.clinical‑overview