Datasets:

araag2
/

TREC_Precision-Medicine

dataset_info:
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      - name: relevance
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      - name: iteration
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        dtype: string
      - name: disease
        dtype: string
      - name: gene
        dtype: string
      - name: demographic
        dtype: string
      - name: doc_id
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      - name: iteration
        dtype: string
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configs:
  - config_name: 2017_conversational
    data_files:
      - split: test
        path: 2017_conversational/test-*
  - config_name: 2017_processed
    data_files:
      - split: test
        path: 2017_processed/test-*
  - config_name: 2017_source
    data_files:
      - split: test
        path: 2017_source/test-*
  - config_name: 2018_conversational
    data_files:
      - split: test
        path: 2018_conversational/test-*
  - config_name: 2018_processed
    data_files:
      - split: test
        path: 2018_processed/test-*
  - config_name: 2018_source
    data_files:
      - split: test
        path: 2018_source/test-*
  - config_name: 2019_conversational
    data_files:
      - split: test
        path: 2019_conversational/test-*
  - config_name: 2019_processed
    data_files:
      - split: test
        path: 2019_processed/test-*
  - config_name: 2019_source
    data_files:
      - split: test
        path: 2019_source/test-*
license: cc-by-sa-4.0
task_categories:
  - text-retrieval
  - text-classification
language:
  - en
tags:
  - medical
pretty_name: TREC_Precision-Medicine
size_categories:
  - 100K<n<1M

TREC Precision Medicine (2017, 2018 and 2019)

	Links
Homepage:	TREC
Paper:	2017 / 2018 / 2019 / 2020
Contact (Original Authors):	Kirk Roberts (Kirk.Roberts@uth.tmc.edu )
Contact (Curator):	Artur Guimarães (artur.guimas@gmail.com)

Dataset Summary

This track focused on oncologists looking for evidence-based treatment literature and clinical trials.

Data Instances

Source Format

{
    "query_id":"1",
    "disease":"melanoma",
    "gene":"BRAF (E586K)",
    "demographic":"64-year-old female",
    "doc_id":"NCT00001685",
    "relevance":0,
    "iteration":"0"
}

Data Fields

Source Format

TO:DO

Data Splits

TO:DO

Additional Information

Dataset Curators

Original Paper

Kirk Roberts - School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
Dina Demner-Fushman - Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
Ellen M. Voorhees - Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD
William R. Hersh and Steven Bedrick - Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR
Alexander J. Lazar - Departments of Pathology & Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX
Shubham Pant - Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX

Huggingface Curator

Artur Guimarães (artur.guimas@gmail.com) - INESC-ID / University of Lisbon - Instituto Superior Técnico

Licensing Information

CC BY-SA 4.0

Citation Information

@inproceedings{roberts2017overview,
  title={Overview of the TREC 2017 precision medicine track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham},
  booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
  volume={26},
  pages={https--trec},
  year={2017}
}

@inproceedings{roberts2018overview,
  title={Overview of the TREC 2018 Precision Medicine Track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J},
  booktitle={27th Text REtrieval Conference, TREC 2018},
  year={2018}
}

@inproceedings{roberts2019overview,
  title={Overview of the TREC 2019 precision medicine track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham and Meric-Bernstam, Funda},
  booktitle={The... Text REtrieval Conference: TREC. Text REtrieval Conference},
  volume={1250},
  pages={https--trec},
  year={2019}
}

@inproceedings{roberts2020overview,
  title={Overview of the TREC 2020 precision medicine track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Bedrick, Steven and Hersh, William R},
  booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
  volume={1266},
  pages={https--trec},
  year={2020}
}

Contributions

Thanks to araag2 for adding this dataset.