feat_line_text stringlengths 4.48k 87.5k | feat_filename_text int64 9 32.7k | text stringlengths 4.21k 81.5k | feat_shorter_abstract stringlengths 218 3.41k | target stringlengths 711 3.65k | evaluation_predictions sequence |
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BACKGROUND
metagenomics is a relatively recent field of research, dealing primarily with the investigation of microbial consortia of uncultivable organisms.
it has enabled the study of microbiota sampled directly from environmental niches, such as the ocean <cit> , soil <cit> , hot springs <cit> , hydrothermal vents... | 26,997 | metagenomics is a relatively recent field of research, dealing primarily with the investigation of microbial consortia of uncultivable organisms. it has enabled the study of microbiota sampled directly from environmental niches, such as the ocean, soil, hot springs, hydrothermal vents, polar ice caps and hypersaline e... | unsupervised clustering revealed ofdeg related features performed better than standard tetranucleotide frequency in representing a relevant organism specific signal. here, we propose a one-dimensional signature, ofdeg, derived from the oligonucleotide frequency profile of a dna sequence, and show that it is possible to... | the characterisation, or binning, of metagenome fragments is an important first step to further downstream analysis of microbial consortia. here, we propose a one-dimensional signature, ofdeg, derived from the oligonucleotide frequency profile of a dna sequence, and show that it is possible to obtain a meaningful phyl... | [
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BACKGROUND
the discovery of three verrucomicrobial methanotrophs that constitute the methylacidiphilum genus and characterization of their ecological, physiological, and phylogenetic properties have shed light on the diversity of processes through which aerobic methanotrophs use methane as their sole source of carbon ... | 29,496 | the discovery of three verrucomicrobial methanotrophs that constitute the methylacidiphilum genus and characterization of their ecological, physiological, and phylogenetic properties have shed light on the diversity of processes through which aerobic methanotrophs use methane as their sole source of carbon and energy.... | in this study, we present the complete genome sequence of methylacidiphilum fumariolicum solv, obtained using pacific biosciences single-molecule real-time sequencing technology. unravelling the m. fumariolicum solv genome and its epigenetic regulation allow for robust characterization of biological processes that are ... | aerobic methanotrophs can grow in hostile volcanic environments and use methane as their sole source of energy. the discovery of three verrucomicrobial methylacidiphilum strains has revealed diverse metabolic pathways used by these methanotrophs, including mechanisms through which methane is oxidized. the basis of a c... | [
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BACKGROUND
the ramachandran plot <cit> is the 2d plot of the φ-ψ torsion angles of the protein backbone.
it provides a simple view of the conformation of a protein.
the φ-ψ angles cluster into distinct regions in the ramachandran plot where each region corresponds to a particular secondary structure.
there are four b... | 28,856 | the ramachandran plot is the 2d plot of the φ-ψ torsion angles of the protein backbone. it provides a simple view of the conformation of a protein. the φ-ψ angles cluster into distinct regions in the ramachandran plot where each region corresponds to a particular secondary structure. there are four basic types of rama... | the ramachandran plot is a fundamental tool in the analysis of protein structures. of the basic types of ramachandran plots, the interactions that determine the generic and proline ramachandran plots are well understood. the interactions of the glycine and pre-proline ramachandran plots are not. in pre-proline, we anal... | the ramachandran plot is a fundamental tool in the analysis of protein structures. of the basic types of ramachandran plots, the interactions that determine the generic and proline ramachandran plots are well understood. the interactions of the glycine and pre-proline ramachandran plots are not. in glycine, the ψ ang... | [
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"BACKGROUND\nthe assessment of gene expression of the human transcriptome using microarray technolog(...TRUNCATED) | 3,793 | " the assessment of gene expression of the human transcriptome using microarray technology is a powe(...TRUNCATED) | "correlation coefficients for pairwise comparisons of expression levels for maintenance genes in whi(...TRUNCATED) | " microarray technology provides a powerful tool for defining gene expression profiles of airway epi(...TRUNCATED) | [2,0,0,5177,30766,806,16,10,2247,3944,13,9397,14819,8,10596,8151,8117,963,11,14519,9,2340,6757,5043,(...TRUNCATED) |
"BACKGROUND\nglutathione transferases , formerly known as glutathione s-transferases, are the enzyme(...TRUNCATED) | 7,740 | " glutathione transferases, formerly known as glutathione s-transferases, are the enzymes involved i(...TRUNCATED) | "sequence analysis together with the organization of putative motifs indicated the potential diverse(...TRUNCATED) | " glutathione s-transferases are the ubiquitous enzymes that play a key role in cellular detoxificat(...TRUNCATED) | [2,0,0,0,23457,2681,8525,2937,9354,32,963,11,19729,31838,5000,30,21044,3252,1295,5,7182,2379,3320,19(...TRUNCATED) |
"BACKGROUND\nsalmonellae are gram-negative bacteria causing a variety of disease syndromes in humans(...TRUNCATED) | 11,905 | " salmonellae are gram-negative bacteria causing a variety of disease syndromes in humans and animal(...TRUNCATED) | "the absence of spic led to reduced expression of the flhd protein, which functions as the master re(...TRUNCATED) | " spic encoded within salmonella pathogenicity island on the salmonella enterica serovar typhimurium(...TRUNCATED) | [2,0,5,1460,9,6641,28913,5104,2914,2426,6821,1417,271,13152,32079,7,6008,624,13418,21130,3443,16,155(...TRUNCATED) |
"BACKGROUND\narising interests in metabolic engineering have focused on systems analyses of cell met(...TRUNCATED) | 7,828 | " arising interests in metabolic engineering have focused on systems analyses of cell metabolisms. m(...TRUNCATED) | "the simulation results can be exported in the sbml format. microbesflux is able to automatically do(...TRUNCATED) | " concurrent with the efforts currently underway in mapping microbial genomes using high-throughput (...TRUNCATED) | [2,0,30798,34903,1966,16,10,762,1548,11,1743,18004,14,23483,5,11,43486,32834,1713,11,10,30798,1546,8(...TRUNCATED) |
"BACKGROUND\nthe \"out of africa\" model postulating a single \"southern route\" dispersal of \"mode(...TRUNCATED) | 17,586 | " the \"out of africa\" model postulating a single \"southern route\" dispersal of \"modern human\" (...TRUNCATED) | "accordingly, we attempted to re-evaluate the impact and contribution of earliest settlers in shapin(...TRUNCATED) | " the \"out of africa\" model postulating single \"southern route\" dispersal posits arrival of \"an(...TRUNCATED) | [2,0,0,5,22,995,9,9724,14962,113,1421,618,11539,10,881,22,29,45846,3420,113,38352,337,9,22,28810,105(...TRUNCATED) |
"BACKGROUND\ninfections of the udder are a key disease for dairy animals <cit> .\nthe course of th(...TRUNCATED) | 28,147 | " infections of the udder are a key disease for dairy animals. the course of the infection and its r(...TRUNCATED) | "considerably divergent data have been published from attempts to model the e. coli vs. s. aureus sp(...TRUNCATED) | " considerably divergent data have been published from attempts to model the e. coli vs. s. aureus s(...TRUNCATED) | [2,0,0,0,1690,8258,4360,36240,26797,10,2407,687,8,2714,5260,1725,493,31435,32,538,35904,9,5,1717,417(...TRUNCATED) |
"BACKGROUND\ncurrent genome sequencing projects are producing a wealth of data in the form of sequen(...TRUNCATED) | 32,378 | " current genome sequencing projects are producing a wealth of data in the form of sequences of biol(...TRUNCATED) | "we propose a new method to derive'functional distances' between go terms that is based on the simul(...TRUNCATED) | " a fundamental problem when trying to define the functional relationships between proteins is the d(...TRUNCATED) | [2,0,0,595,27392,32243,1377,32,5591,10,4764,9,414,11,5,1026,9,26929,9,12243,11424,12822,4,13,42,414,(...TRUNCATED) |
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Dataset Card for AutoTrain Evaluator
This repository contains model predictions generated by AutoTrain for the following task and dataset:
- Task: Summarization
- Model: Blaise-g/led_pubmed_sumpubmed_5
- Dataset: Blaise-g/SumPubmed
- Config: Blaise-g--SumPubmed
- Split: test
To run new evaluation jobs, visit Hugging Face's automatic model evaluator.
Contributions
Thanks to @Blaise-g for evaluating this model.
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