repo_id stringlengths 21 96 | file_path stringlengths 31 155 | content stringlengths 1 92.9M | __index_level_0__ int64 0 0 |
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rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure | rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure/tests/test_polygon.py | import cupy as cp
import pytest
from cupy.testing import assert_array_equal
from numpy.testing import assert_equal
from cucim.skimage.measure import approximate_polygon, subdivide_polygon
from cucim.skimage.measure._polygon import _SUBDIVISION_MASKS
_square = cp.array(
[
[0, 0],
[0, 1],
[0... | 0 |
rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure | rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure/tests/test_entropy.py | import cupy as cp
import numpy as np
from numpy.testing import assert_almost_equal
from cucim.skimage.measure import shannon_entropy
def test_shannon_ones():
img = cp.ones((10, 10))
res = shannon_entropy(img, base=np.e)
assert_almost_equal(float(res), 0.0)
def test_shannon_all_unique():
img = cp.ar... | 0 |
rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure | rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure/tests/test_block.py | import cupy as cp
import pytest
from cupy.testing import assert_array_equal
from cucim.skimage.measure import block_reduce
def test_block_reduce_sum():
image1 = cp.arange(4 * 6).reshape(4, 6)
out1 = block_reduce(image1, (2, 3))
# fmt: off
expected1 = cp.array([[24, 42], # noqa
... | 0 |
rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure | rapidsai_public_repos/cucim/python/cucim/src/cucim/skimage/measure/tests/test_moments.py | import itertools
import cupy as cp
import numpy as np
import pytest
from cupy.testing import (
assert_allclose,
assert_array_almost_equal,
assert_array_equal,
)
from cupyx.scipy import ndimage as ndi
from numpy.testing import assert_almost_equal
from skimage import draw
from cucim.skimage._shared.utils im... | 0 |
rapidsai_public_repos/cucim/python | rapidsai_public_repos/cucim/python/pybind11/macros.h | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python | rapidsai_public_repos/cucim/python/pybind11/cucim_pydoc.h | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python | rapidsai_public_repos/cucim/python/pybind11/cucim_py.h | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python | rapidsai_public_repos/cucim/python/pybind11/cucim_py.cpp | /*
* Copyright (c) 2020-2023, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/cache/cache_py.h | /*
* Copyright (c) 2021, NVIDIA CORPORATcacheN.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable l... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/cache/image_cache_pydoc.h | /*
* Copyright (c) 2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/cache/cache_py.cpp | /*
* Copyright (c) 2021-2023, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/cache/cache_pydoc.h | /*
* Copyright (c) 2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/cache/image_cache_py.cpp | /*
* Copyright (c) 2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/cache/image_cache_py.h | /*
* Copyright (c) 2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/profiler/profiler_py.cpp | /*
* Copyright (c) 2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/profiler/profiler_pydoc.h | /*
* Copyright (c) 2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/profiler/profiler_py.h | /*
* Copyright (c) 2021, NVIDIA CORPORATcacheN.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable l... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/filesystem/filesystem_pydoc.h | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/filesystem/filesystem_py.cpp | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/filesystem/filesystem_py.h | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/filesystem/cufile_pydoc.h | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/filesystem/cufile_py.h | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/filesystem/cufile_py.cpp | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/memory/memory_py.cpp | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/memory/memory_py.h | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/memory/memory_pydoc.h | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/io/device_pydoc.h | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/io/io_py.h | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/io/device_py.cpp | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/io/io_pydoc.h | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/python/pybind11 | rapidsai_public_repos/cucim/python/pybind11/io/io_py.cpp | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/test_data/gen_images.sh | #!/bin/bash
SCRIPT_DIR=$(dirname "$(readlink -f "$0")")
TOP="$(git rev-parse --show-toplevel 2> /dev/null || echo "${SCRIPT_DIR}")"
[ -z "${TOP}" ] && >&2 echo "Repository root is not available!" && exit 1
DEST_FOLDER=${TOP}/test_data/generated
mkdir -p ${DEST_FOLDER}
generate_image() {
local recipe="${1:-tiff}... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/test_data/README.md | # Test Data Folder (`test_data` folder)
Symbolic links for for this folder is available under the following subfolders:
- `cpp/plugins/cucim.kit.cuslide`
- `python/cucim`
## Generated Test Data (`test_data/generated` folder)
Generated by executing `gen_images.sh`.
- tiff_stripe_32x32_16.tif
- tiff_stripe_4096x4096... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/test_data/push_testdata.sh | #!/bin/bash
SCRIPT_DIR=$(dirname "$(readlink -f "$0")")
docker build -t gigony/svs-testdata:little-big ${SCRIPT_DIR}
docker push gigony/svs-testdata:little-big
| 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/test_data/Dockerfile | FROM scratch
WORKDIR /input
COPY ./input /input
CMD ["dummy"]
| 0 |
rapidsai_public_repos/cucim/test_data | rapidsai_public_repos/cucim/test_data/input/README.md |
# Test Dataset
TUPAC-TR-488.svs and TUPAC-TR-467.svs are breast cancer cases (TCGA-BRCA) from the dataset
of Tumor Proliferation Assessment Challenge 2016 (TUPAC16 | MICCAI Grand Challenge) which are publicly
available through [The Cancer Genome Atlas (TCGA)](https://www.cancer.gov/about-nci/organization/ccg/research... | 0 |
rapidsai_public_repos/cucim/test_data | rapidsai_public_repos/cucim/test_data/input/LICENSE-3rdparty | Creative Commons Legal Code
Attribution 3.0 Unported
CREATIVE COMMONS CORPORATION IS NOT A LAW FIRM AND DOES NOT PROVIDE
LEGAL SERVICES. DISTRIBUTION OF THIS LICENSE DOES NOT CREATE AN
ATTORNEY-CLIENT RELATIONSHIP. CREATIVE COMMONS PROVIDES THIS
INFORMATION ON AN "AS-IS" BASIS. CREATIVE COMMONS MAKES ... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/gds/CMakeLists.txt | #
# Copyright (c) 2020-2021, NVIDIA CORPORATION.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agr... | 0 |
rapidsai_public_repos/cucim/gds | rapidsai_public_repos/cucim/gds/include/cufile_stub.h | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim/gds | rapidsai_public_repos/cucim/gds/src/cufile_stub.cpp | /*
* Copyright (c) 2020, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law ... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.abseil-cpp |
Apache License
Version 2.0, January 2004
https://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.googletest | Copyright 2008, Google Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclai... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.fmt | Copyright (c) 2012 - present, Victor Zverovich
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
di... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.StainTools | MIT License
Copyright (c) 2018 Peter Byfield
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, dis... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.pytorch | From PyTorch:
Copyright (c) 2016- Facebook, Inc (Adam Paszke)
Copyright (c) 2014- Facebook, Inc (Soumith Chintala)
Copyright (c) 2011-2014 Idiap Research Institute (Ronan Collobert)
Copyright (c) 2012-2014 Deepmind Technologies (Koray Kavukcuoglu)
Copyright (c) 2011-2012 NEC Laboratori... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.dockcross | Copyright (c) 2015, 2016, 2017, 2018, 2021 Steeve Morin, Rob Burns, Matthew McCormick, Jean-Christophe-Fillion-Robin, Bensuperpc
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.pugixml | MIT License
Copyright (c) 2006-2020 Arseny Kapoulkine
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Software without
restriction, including without limitation the rights to use,
copy, modify, merge, pub... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.libcuckoo | Copyright (C) 2013, Carnegie Mellon University and Intel Corporation
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable l... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.dask | BSD 3-Clause License
Copyright (c) 2014-2018, Anaconda, Inc. and contributors
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, th... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.tifffile | BSD 3-Clause License
Copyright (c) 2008-2020, Christoph Gohlke
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of ... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.libtiff | Copyright (c) 1988-1997 Sam Leffler
Copyright (c) 1991-1997 Silicon Graphics, Inc.
Permission to use, copy, modify, distribute, and sell this software and
its documentation for any purpose is hereby granted without fee, provided
that (i) the above copyright notices and this permission notice appear in
all copies of th... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.pytest | The MIT License (MIT)
Copyright (c) 2004-2020 Holger Krekel and others
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limitation the rights to
use, copy, m... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.aicsimageio | Copyright 2020 Allen Institute for Cell Science
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.openslide | OpenSlide
Carnegie Mellon University and others
https://openslide.org/
====================
Unless otherwise specified, this code is copyright Carnegie Mellon
University.
This code is licensed under the GNU LGPL version 2.1, not any later
version. See the file lgpl-2.1.txt for the text of the license.
OpenSlide ... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.click | Copyright 2014 Pallets
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. Redistribution... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.benchmark |
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.spdlog | The MIT License (MIT)
Copyright (c) 2016 Gabi Melman.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, pub... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.pybind11 | Copyright (c) 2016 Wenzel Jakob <wenzel.jakob@epfl.ch>, All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this
list of conditio... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.gputil | MIT License
Copyright (c) 2017 anderskm
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribu... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.taskflow | TASKFLOW MIT LICENSE
Copyright (c) 2018-2021 Dr. Tsung-Wei Huang
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify,... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.psutil | BSD 3-Clause License
Copyright (c) 2009, Jay Loden, Dave Daeschler, Giampaolo Rodola'
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright n... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.libdeflate | Copyright 2016 Eric Biggers
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation files
(the "Software"), to deal in the Software without restriction,
including without limitation the rights to use, copy, modify, merge,
publish, distribute, sublicens... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.Catch2 | Boost Software License - Version 1.0 - August 17th, 2003
Permission is hereby granted, free of charge, to any person or organization
obtaining a copy of the software and accompanying documentation covered by
this license (the "Software") to use, reproduce, display, distribute,
execute, and transmit the Software, and t... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.pybind11_json | BSD 3-Clause License
Copyright (c) 2019,
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the follo... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.NVTX | Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.cuda | End User License Agreement
--------------------------
The CUDA Toolkit End User License Agreement applies to the
NVIDIA CUDA Toolkit, the NVIDIA CUDA Samples, the NVIDIA
Display Driver, NVIDIA Nsight tools (Visual Studio Edition),
and the associated documentation on CUDA APIs, programming
model and development tools. ... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.dask-cuda | Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.scifio | Copyright (c) 2011 - 2020, SCIFIO developers.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this
list of conditions and the... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.CLI11 | CLI11 1.8 Copyright (c) 2017-2019 University of Cincinnati, developed by Henry
Schreiner under NSF AWARD 1414736. All rights reserved.
Redistribution and use in source and binary forms of CLI11, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source co... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.opencv-contrib-python |
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.libjpeg-turbo | libjpeg-turbo Licenses
======================
libjpeg-turbo is covered by three compatible BSD-style open source licenses:
- The IJG (Independent JPEG Group) License, which is listed in
[README.ijg](README.ijg)
This license applies to the libjpeg API library and associated programs
(any code inherited from lib... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.zarr-python | The MIT License (MIT)
Copyright (c) 2015-2018 Zarr Developers <https://github.com/zarr-developers>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitatio... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.pytest-lazy-fixture | The MIT License (MIT)
Copyright (c) 2016 Marsel Zaripov
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, p... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.folly |
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.pba+ | MIT License
Copyright (c) 2019 School of Computing, National University of Singapore
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
t... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.rmm | Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.numpy | Copyright (c) 2005-2020, NumPy Developers.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.cupy | Copyright (c) 2015 Preferred Infrastructure, Inc.
Copyright (c) 2015 Preferred Networks, Inc.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the ... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.scikit-image | Copyright (C) 2019, the scikit-image team
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the f... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.boost | Boost Software License - Version 1.0 - August 17th, 2003
Permission is hereby granted, free of charge, to any person or organization
obtaining a copy of the software and accompanying documentation covered by
this license (the "Software") to use, reproduce, display, distribute,
execute, and transmit the Software, and t... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.json | MIT License
Copyright (c) 2013-2020 Niels Lohmann
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/3rdparty/LICENSE.nvjpeg2000 | Software License Agreement
--------------------------
LICENSE AGREEMENT FOR NVIDIA SOFTWARE DEVELOPMENT KITS
This license agreement, including exhibits attached ("Agreementâ€) is a legal agreement between you and NVIDIA Corporation ("NVIDIA") and governs your use of a NVIDIA software development kit (“SDKâ€).
E... | 0 |
rapidsai_public_repos/cucim/conda | rapidsai_public_repos/cucim/conda/environments/all_cuda-120_arch-x86_64.yaml | # This file is generated by `rapids-dependency-file-generator`.
# To make changes, edit ../../dependencies.yaml and run `rapids-dependency-file-generator`.
channels:
- rapidsai
- rapidsai-nightly
- conda-forge
- nvidia
dependencies:
- GPUtil>=1.4.0
- c-compiler
- click
- cmake>=3.23.1,!=3.25.0
- cuda-cudart-dev
- cuda-... | 0 |
rapidsai_public_repos/cucim/conda | rapidsai_public_repos/cucim/conda/environments/all_cuda-118_arch-x86_64.yaml | # This file is generated by `rapids-dependency-file-generator`.
# To make changes, edit ../../dependencies.yaml and run `rapids-dependency-file-generator`.
channels:
- rapidsai
- rapidsai-nightly
- conda-forge
- nvidia
dependencies:
- GPUtil>=1.4.0
- c-compiler
- click
- cmake>=3.23.1,!=3.25.0
- cuda-version=11.8
- cud... | 0 |
rapidsai_public_repos/cucim/conda/recipes | rapidsai_public_repos/cucim/conda/recipes/libcucim/conda_build_config.yaml | c_compiler_version:
- 11
cxx_compiler_version:
- 11
cuda_compiler:
- cuda-nvcc
cuda11_compiler:
- nvcc
sysroot_version:
- "2.17"
# The CTK libraries below are missing from the conda-forge::cudatoolkit package
# for CUDA 11. The "*_host_*" version specifiers correspond to `11.8` packages
# and the "*_run_... | 0 |
rapidsai_public_repos/cucim/conda/recipes | rapidsai_public_repos/cucim/conda/recipes/libcucim/build.sh | # Copyright (c) 2021, NVIDIA CORPORATION.
CUCIM_BUILD_TYPE=${CUCIM_BUILD_TYPE:-release}
echo "CC : ${CC}"
echo "CXX : ${CXX}"
# CUDA needs to include $PREFIX/include as system include path
export CUDAFLAGS="-isystem $BUILD_PREFIX/include -isystem $PREFIX/include "
export LD_LIBRARY_PATH="$BUILD_PREF... | 0 |
rapidsai_public_repos/cucim/conda/recipes | rapidsai_public_repos/cucim/conda/recipes/libcucim/meta.yaml | # Copyright (c) 2021-2023, NVIDIA CORPORATION.
{% set version = environ['RAPIDS_PACKAGE_VERSION'].lstrip('v') %}
{% set cuda_version = '.'.join(environ['RAPIDS_CUDA_VERSION'].split('.')[:2]) %}
{% set cuda_major = cuda_version.split('.')[0] %}
{% set date_string = environ['RAPIDS_DATE_STRING'] %}
package:
name: li... | 0 |
rapidsai_public_repos/cucim/conda/recipes | rapidsai_public_repos/cucim/conda/recipes/cucim/conda_build_config.yaml | c_compiler_version:
- 11
cxx_compiler_version:
- 11
cuda_compiler:
- cuda-nvcc
cuda11_compiler:
- nvcc
sysroot_version:
- "2.17"
| 0 |
rapidsai_public_repos/cucim/conda/recipes | rapidsai_public_repos/cucim/conda/recipes/cucim/build.sh | # Copyright (c) 2021, NVIDIA CORPORATION.
CUCIM_BUILD_TYPE=${CUCIM_BUILD_TYPE:-release}
echo "CC : ${CC}"
echo "CXX : ${CXX}"
# CUDA needs to include $PREFIX/include as system include path
export CUDAFLAGS="-isystem $BUILD_PREFIX/include -isystem $PREFIX/include "
export LD_LIBRARY_PATH="$BUILD_PREF... | 0 |
rapidsai_public_repos/cucim/conda/recipes | rapidsai_public_repos/cucim/conda/recipes/cucim/meta.yaml | # Copyright (c) 2021-2023, NVIDIA CORPORATION.
{% set version = environ['RAPIDS_PACKAGE_VERSION'].lstrip('v') %}
{% set py_version = environ['CONDA_PY'] %}
{% set cuda_version = '.'.join(environ['RAPIDS_CUDA_VERSION'].split('.')[:2]) %}
{% set cuda_major = cuda_version.split('.')[0] %}
{% set date_string = environ['RA... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/scripts/run-dist | #!/bin/bash
#
# Copyright (c) 2020, NVIDIA CORPORATION.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/scripts/auditwheel_repair.py | # Apache License, Version 2.0
# Copyright 2020 NVIDIA Corporation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/scripts/debug_python | #!/bin/bash
#
# Copyright (c) 2021, NVIDIA CORPORATION.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/benchmarks/config.h | /*
* Apache License, Version 2.0
* Copyright 2020-2021 NVIDIA Corporation
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unle... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/benchmarks/CMakeLists.txt | #
# Copyright (c) 2020, NVIDIA CORPORATION.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/benchmarks/main.cpp | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim | rapidsai_public_repos/cucim/benchmarks/primitives.cpp | /*
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable... | 0 |
rapidsai_public_repos/cucim/benchmarks | rapidsai_public_repos/cucim/benchmarks/skimage/cucim_exposure_bench.py | import argparse
import os
import pickle
import cupy
import cupy as cp
import numpy as np
import pandas as pd
import skimage
import skimage.exposure
from _image_bench import ImageBench
import cucim.skimage
import cucim.skimage.exposure
class ExposureBench(ImageBench):
def set_args(self, dtype):
if np.dty... | 0 |
rapidsai_public_repos/cucim/benchmarks | rapidsai_public_repos/cucim/benchmarks/skimage/run-nv-bench-exposure.sh | #!/bin/bash
param_shape=(512,512 3840,2160 3840,2160,3 192,192,192)
param_filt=(equalize_adapthist cumulative_distribution equalize_hist rescale_intensity adjust_gamma adjust_log adjust_sigmoid is_low_contrast match_histograms)
param_dt=(float32 uint8)
for shape in "${param_shape[@]}"; do
for filt in "${param_filt[... | 0 |
rapidsai_public_repos/cucim/benchmarks | rapidsai_public_repos/cucim/benchmarks/skimage/cupyx_scipy_ndimage_filter_bench.py | import os
import pickle
import cupy
import cupy as cp
import cupyx.scipy.ndimage
import numpy as np
import pandas as pd
import scipy
from _image_bench import ImageBench
class ConvolveBench(ImageBench):
def __init__(
self,
function_name,
shape,
weights_shape,
dtypes=[np.flo... | 0 |
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