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function [jobId, taskId] = parallelDriver(varargin) |
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jobopts.parallelize = 0 ; |
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jobopts.jobId = NaN ; |
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jobopts.taskId = NaN ; |
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jobopts.jobDir = '' ; |
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jobopts.needsJava = false ; |
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jobopts.waitJobs = [] ; |
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jobopts.numNodes = 10 ; |
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jobopts.freeMemMb = 1900 ; |
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jobopts = vl_argparse(jobopts, varargin{:}) ; |
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job_qsub_opts = [] ; |
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if ~isempty(jobopts.waitJobs) |
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jobList = sprintf('%d,', jobopts.waitJobs) ; |
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job_qsub_opts = [job_qsub_opts ... |
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' -hold_jid ' jobList(1:end-1)] ; |
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end |
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if jobopts.freeMemMb > 0 |
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job_qsub_opts = [job_qsub_opts ... |
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sprintf(' -l mem_free=%gm', jobopts.freeMemMb) ... |
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sprintf(' -l vf=%gm', jobopts.freeMemMb)] ; |
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end |
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drop = dbstack ; |
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callingMFile = drop(2).name ; |
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clear drop ; |
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taskId = jobopts.taskId ; |
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jobId = jobopts.jobId ; |
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if ~ jobopts.parallelize |
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fprintf('>>>>> %s <<<<<\n', callingMFile) ; |
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return ; |
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end |
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if ~isnan(jobopts.taskId) |
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return ; |
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end |
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tic ; |
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outputDir = fullfile(jobopts.jobDir, sprintf('j$JOB_ID-%s', callingMFile)) ; |
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stdErrPath = fullfile(outputDir, 'err$TASK_ID.txt') ; |
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stdOutPath = fullfile(outputDir, 'out$TASK_ID.txt') ; |
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matCmd = sprintf(['jobName=sprintf(''j%%d-%s'',sgeJobId);' ... |
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'jobPath=fullfile(''%s'', jobName);' ... |
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'load(fullfile(jobPath,''conf''));' ... |
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'disp(conf);' ... |
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'%s(conf,''parallelize'',1,''jobId'',sgeJobId,' ... |
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' ''taskId'',sgeTaskId,''jobDir'',''%s'');'], ... |
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callingMFile, ... |
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jobopts.jobDir, ... |
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callingMFile, ... |
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jobopts.jobDir) ; |
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if jobopts.needsJava |
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scriptName = 'qsub_matlab_java.sh' ; |
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else |
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scriptName = 'qsub_matlab.sh' ; |
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end |
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cmd = sprintf(['qsub ' ... |
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'-h ' ... |
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'-t 1-%d ' ... |
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'-o ''%s'' ' ... |
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'-e ''%s'' ' ... |
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'-N ''%s'' ' ... |
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' %s ' ... |
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'%s "%s"'], ... |
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jobopts.numNodes, ... |
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stdOutPath, stdErrPath, ... |
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callingMFile, ... |
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job_qsub_opts, ... |
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scriptName, ... |
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matCmd) ; |
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[s,w] = system(cmd) ; |
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if s ~= 0 |
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fprintf('Offending command:\n%s\n\n', cmd) ; |
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error(w) ; |
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end |
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tmp = regexp(w, ' ([0-9]*)\.', 'tokens') ; |
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jobId = sscanf(tmp{1}{1}, '%d') ; |
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taskId = NaN ; |
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jobName = sprintf('j%d-%s', jobId, callingMFile) ; |
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outputDir = fullfile(jobopts.jobDir, jobName) ; |
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ensuredir(outputDir) ; |
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confPath = fullfile(outputDir, 'conf.mat') ; |
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evalin('caller', sprintf('ssave(''%s'', ''conf'')', confPath)) ; |
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fid = fopen(fullfile(outputDir, 'SGE_SUB_TIME'),'w') ; |
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fwrite(fid, datestr(now)) ; |
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fclose(fid) ; |
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fid = fopen(fullfile(outputDir, 'SGE_CMD'),'w') ; |
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fwrite(fid, cmd) ; |
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fclose(fid) ; |
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fid = fopen(fullfile(outputDir, 'SGE_ID'),'w') ; |
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fwrite(fid, tmp{1}{1}) ; |
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fclose(fid) ; |
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fprintf('Spawning job array ''%s'' with %d instances.\n', ... |
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outputDir, jobopts.numNodes) ; |
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fprintf('\tSGE job id: %d\n', jobId) ; |
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fprintf('\tqsub additional options: ''%s''.\n', job_qsub_opts) ; |
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cmd = sprintf('qalter -h U %d', jobId) ; |
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[s,w] = system(cmd) ; |
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if s ~= 0 |
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fprintf('Offending command:\n%s\n\n', cmd) ; |
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error(w) ; |
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end |
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