Datasets:

Modalities:
Text
Languages:
English
Size:
< 1K
Libraries:
Datasets
License:
Dataset Viewer
Auto-converted to Parquet Duplicate
id
stringlengths
1
3
document_id
stringlengths
8
8
passages
list
entities
list
events
list
coreferences
list
relations
list
1
12890863
[ { "id": "40d63e07-2d58-4051-9921-5b8913a82752", "type": "title", "text": [ "The effect of transforming growth factor beta1 gene polymorphisms in ankylosing spondylitis." ], "offsets": [ [ 0, 94 ] ] }, { "id": "96bcfe01-16bd-4c43-bf22-fb3635f02e3a",...
[ { "id": "029fbfd5-d042-48b8-99f9-0f740f4dcb34", "type": "gene", "text": [ "transforming growth factor beta1" ], "offsets": [ [ 15, 47 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7040" } ] }, { "id": "0...
[]
[]
[]
2
12915397
[ { "id": "3a051039-7372-4c10-aa92-e84f5a512d87", "type": "title", "text": [ "Uncoupling protein-2 polymorphisms in type 2 diabetes, obesity, and insulin secretion." ], "offsets": [ [ 0, 89 ] ] }, { "id": "31219e4a-e9da-4ae0-b9be-18b6cba3dc3b", ...
[ { "id": "92b5dd19-6eb4-4355-b9e5-0e723d3abe29", "type": "gene", "text": [ "insulin" ], "offsets": [ [ 70, 77 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3630" } ] }, { "id": "2b70d1a7-19ec-4065-b038-be...
[]
[]
[]
3
14523377
[ { "id": "c28127ba-5157-4c5d-a5bc-39df0c3f842e", "type": "title", "text": [ "SLC11A1 (formerly NRAMP1 ) and susceptibility to visceral leishmaniasis in The Sudan." ], "offsets": [ [ 0, 87 ] ] }, { "id": "0c280920-0a13-4ded-b573-e2d86e681fab", "t...
[ { "id": "ea061e36-d7f1-4285-a3d3-668e18ac8159", "type": "gene", "text": [ "SLC11A1" ], "offsets": [ [ 0, 7 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "6556" } ] }, { "id": "c11342dc-323d-466c-b1de-b48f...
[]
[]
[]
4
14635012
[ { "id": "187a9068-b890-46d2-972f-a29b88bb3356", "type": "title", "text": [ "Association of TNF-beta polymorphism with disease severity among patients infected with hepatitis C virus." ], "offsets": [ [ 0, 108 ] ] }, { "id": "b17a24b6-9d1e-49a7-9391...
[ { "id": "3710f0d4-03b7-459d-b3eb-0c14e551f546", "type": "gene", "text": [ "Tumour necrosis factor alpha" ], "offsets": [ [ 189, 217 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7124" } ] }, { "id": "3b7...
[]
[]
[]
5
14645199
[ { "id": "2314077a-5608-42eb-9936-f5790f20b951", "type": "title", "text": [ "An association between variants in the IGF2 gene and Beckwith-Wiedemann syndrome: interaction between genotype and epigenotype." ], "offsets": [ [ 0, 129 ] ] }, { "id": "80...
[ { "id": "bf1b7523-f47f-42d4-a1da-fa441eacfbc2", "type": "gene", "text": [ "IGF2" ], "offsets": [ [ 40, 44 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3481" } ] }, { "id": "1db57a02-b2a4-4925-8a7b-aade2...
[]
[]
[]
6
14651519
[ { "id": "3cdb32ae-e6fc-455b-bccb-a0186971e3d2", "type": "title", "text": [ "Association of Fcgamma receptor IIb polymorphism with susceptibility to systemic lupus erythematosus in Chinese: a common susceptibility gene in the Asian populations." ], "offsets": [ [ 0, ...
[ { "id": "32f10cfe-acad-4ef1-9f84-c95b258c718f", "type": "gene", "text": [ "FCGR2B" ], "offsets": [ [ 484, 490 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "2213" } ] }, { "id": "398029e1-89ea-4d3a-aa05-6...
[]
[]
[]
7
14651522
[ { "id": "ab030e7f-dd9b-4c5f-b96e-dd62841db9eb", "type": "title", "text": [ "Chemokine gene polymorphisms associate with gender in patients with uveitis." ], "offsets": [ [ 0, 76 ] ] }, { "id": "7f73221f-8077-4845-97e3-24d5c931233a", "type": "abst...
[ { "id": "e8cf7785-9f1f-44c2-ac67-7c28dc272811", "type": "gene", "text": [ "CCL2" ], "offsets": [ [ 481, 485 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "6347" } ] }, { "id": "d6e889aa-63c1-45f0-92ca-fb4...
[]
[]
[]
8
14673707
[ { "id": "96a2db98-c2e8-477f-885b-4c0167b4d1a1", "type": "title", "text": [ "Identification of a novel splice site mutation of CLCN5 gene and characterization of a new alternative 5' UTR end of ClC-5 mRNA in human renal tissue and leukocytes." ], "offsets": [ [ 0, 16...
[ { "id": "e14a1beb-2830-493e-8aa5-f5c054549049", "type": "gene", "text": [ "CLCN5" ], "offsets": [ [ 51, 56 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "1184" } ] }, { "id": "9685d880-6b9b-4a51-ad80-ba14...
[]
[]
[]
9
14681301
[ { "id": "07a0d4ae-5a6f-4899-9672-43fa38f05bad", "type": "title", "text": [ "Association of tumor necrosis factor polymorphisms with asthma and serum total IgE ." ], "offsets": [ [ 0, 85 ] ] }, { "id": "81e6a7ca-06e1-4c0a-b247-72e845628d7c", "typ...
[ { "id": "05ece9b8-0adf-4710-b358-257cdc3dfc9d", "type": "gene", "text": [ "TNFA" ], "offsets": [ [ 116, 120 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7124" } ] }, { "id": "a74ae90f-cb87-48e0-9326-3ae...
[]
[]
[]
10
14685824
[ { "id": "fd852a0f-0271-4b09-bbd5-68193cfd245a", "type": "title", "text": [ "Association between polymorphism of the dopamine transporter gene and early smoking onset: an interaction risk on nicotine dependence." ], "offsets": [ [ 0, 136 ] ] }, { "i...
[ { "id": "b63fdbf6-f807-4d99-8fd9-f5d6918869e2", "type": "gene", "text": [ "dopamine transporter gene (SLC6A3)" ], "offsets": [ [ 192, 226 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "6531" } ] }, { "id"...
[]
[]
[]
11
14693717
[ { "id": "09fd2ddb-dc6e-4d36-a556-29d98df9e758", "type": "title", "text": [ "Genetic variation at the adiponectin locus and risk of type 2 diabetes in women." ], "offsets": [ [ 0, 82 ] ] }, { "id": "2a00d122-8888-46cf-ac9a-fa49e4f10220", "type":...
[ { "id": "a419c5ac-86d9-418b-8fe7-c2a57a872977", "type": "gene", "text": [ "adiponectin" ], "offsets": [ [ 26, 37 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "9370" } ] }, { "id": "c3872780-db39-400b-836...
[]
[]
[]
12
14693721
[ { "id": "bd2e2374-17f5-4d81-ad41-605a3bf5b40f", "type": "title", "text": [ "The common -866 G/A polymorphism in the promoter of uncoupling protein 2 is associated with increased carbohydrate and decreased lipid oxidation in juvenile obesity." ], "offsets": [ [ 0, ...
[ { "id": "be636ffb-0201-498d-8123-cffbb60b33a2", "type": "gene", "text": [ "Uncoupling protein (UCP) 2" ], "offsets": [ [ 170, 196 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7351" } ] }, { "id": "1f05c...
[]
[]
[]
13
14705223
[ { "id": "7a73a42d-0089-4440-9a4b-6d088a85e53f", "type": "title", "text": [ "Interleukin 1alpha single-nucleotide polymorphism associated with systemic sclerosis." ], "offsets": [ [ 0, 86 ] ] }, { "id": "03e3cd17-15a1-4d9f-a85e-858dbbcc6392", "ty...
[ { "id": "162ec1ee-2c02-4bcb-b7c8-d74a110ae59d", "type": "gene", "text": [ "IL-1alpha" ], "offsets": [ [ 219, 228 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3552" } ] }, { "id": "2c1250fe-8532-490f-b44...
[]
[]
[]
14
14709372
[ { "id": "05ebaeb2-d7fa-49e1-b792-d68191691237", "type": "title", "text": [ "Association of gene polymorphisms with coronary artery disease in individuals with or without nonfamilial hypercholesterolemia." ], "offsets": [ [ 0, 127 ] ] }, { "id": "150c...
[ { "id": "2b6452b7-1a03-422a-b95c-ceb37f63ec8c", "type": "gene", "text": [ "platelet-activating factor acetylhydrolase" ], "offsets": [ [ 1151, 1193 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7941" } ] }, ...
[]
[]
[]
15
14712309
[ { "id": "5719c533-8dcb-4f32-aa98-b8e3139997eb", "type": "title", "text": [ "Polymorphisms in the interleukin-20 gene: relationships to plaque-type psoriasis." ], "offsets": [ [ 0, 83 ] ] }, { "id": "89ddb893-cb6a-45dc-8861-ef44755d3bf0", "type"...
[ { "id": "531d9f14-559e-4b62-9356-119cde65b296", "type": "gene", "text": [ "interleukin-20" ], "offsets": [ [ 22, 36 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "50604" } ] }, { "id": "6cb0718a-4d65-43a1...
[]
[]
[]
16
14715843
[ { "id": "2ed1a920-e155-4415-a398-51997fd31dda", "type": "title", "text": [ "Ghrelin receptor gene : identification of several sequence variants in extremely obese children and adolescents, healthy normal-weight and underweight students, and children with short normal stature." ], "offsets"...
[ { "id": "28745f89-8c15-41a9-93e0-35f598700452", "type": "gene", "text": [ "GH secretagogue receptor (GHSR, ghrelin receptor)" ], "offsets": [ [ 201, 250 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "2693" } ] ...
[]
[]
[]
17
14715845
[ { "id": "42c05b4c-6e3a-49cc-9c1e-de200d2daed1", "type": "title", "text": [ "Cytotoxic T lymphocyte-associated molecule-4 polymorphism and relapse of Graves' hyperthyroidism after antithyroid withdrawal." ], "offsets": [ [ 0, 127 ] ] }, { "id": "3d21...
[ { "id": "e4dc7f4f-6db8-4b3e-b2df-5978d447d1a9", "type": "gene", "text": [ "cytotoxic T lymphocyte-associated molecule-4" ], "offsets": [ [ 219, 263 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "1493" } ] }, ...
[]
[]
[]
18
14729863
[ { "id": "7f8aa479-4638-48cb-b473-c6bdc51aabac", "type": "title", "text": [ "APOA5 gene variants, lipoprotein particle distribution, and progression of coronary heart disease: results from the LOCAT study." ], "offsets": [ [ 0, 129 ] ] }, { "id": "ac...
[ { "id": "a210476d-ced4-4fab-9672-d4b24ced3c2b", "type": "gene", "text": [ "apolipoprotein A-V (apoA-V)" ], "offsets": [ [ 175, 202 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "116519" } ] }, { "id": "45...
[]
[]
[]
19
14730381
[ { "id": "8adbde8d-e5b5-4c58-8905-353deb03df8d", "type": "title", "text": [ "Association of the Pro12Ala and C1431T 1431T variants of PPARG and their haplotypes with susceptibility to Type 2 diabetes." ], "offsets": [ [ 0, 130 ] ] }, { "id": "f...
[ { "id": "fd5912c7-23c8-4538-95b0-ebda91d0c5ef", "type": "gene", "text": [ "peroxisome proliferator-activated receptor (PPAR)gamma" ], "offsets": [ [ 180, 234 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "5468" } ...
[]
[]
[]
20
14734460
[ { "id": "da27afa4-64c7-4d8f-9c0e-15f48773202f", "type": "title", "text": [ "Associations between breast cancer susceptibility gene polymorphisms and clinicopathological features." ], "offsets": [ [ 0, 102 ] ] }, { "id": "1af3e59e-b4fe-4622-a2f4-648a5...
[ { "id": "c2a3dc1b-ed5c-48f7-a24c-a9e9acd354d5", "type": "gene", "text": [ "CYP1A1" ], "offsets": [ [ 588, 594 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "1543" } ] }, { "id": "fd200323-d0b3-46cc-b5ad-8...
[]
[]
[]
21
14737097
[ { "id": "fff8f195-db1f-480f-b962-fbc895418580", "type": "title", "text": [ "Both risk alleles for FcgammaRIIA and FcgammaRIIIA are susceptibility factors for SLE: a unifying hypothesis." ], "offsets": [ [ 0, 113 ] ] }, { "id": "2ade9b7f-bc6c-48d3...
[ { "id": "d8f2cceb-b181-4358-9edd-21fae69316d5", "type": "gene", "text": [ "FcgammaRIIA" ], "offsets": [ [ 23, 34 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "2212" } ] }, { "id": "a5cf0a95-5ccb-4d2e-942...
[]
[]
[]
22
14739420
[ { "id": "05949769-c3d5-4f53-83c5-5affd2db49bb", "type": "title", "text": [ "Collagen type I alpha2 ( COL1A2 ) is the susceptible gene for intracranial aneurysms." ], "offsets": [ [ 0, 86 ] ] }, { "id": "ede4ef5d-451f-4904-8cb7-e97bf4c80b86", "ty...
[ { "id": "985c5793-1540-40c5-828b-a2690688f84b", "type": "gene", "text": [ "collagen alpha2(I) gene" ], "offsets": [ [ 116, 139 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "1278" } ] }, { "id": "2889a694...
[]
[]
[]
23
14742985
[ { "id": "5df219a7-e20c-4f53-9ac7-0080841e5a3e", "type": "title", "text": [ "Relationship between postrenal transplant osteonecrosis of the femoral head and gene polymorphisms related to the coagulation and fibrinolytic systems in Japanese subjects." ], "offsets": [ [ 0, ...
[ { "id": "35310ea0-c58c-480e-ba33-498f95d7ecc4", "type": "gene", "text": [ "plasminogen activator inhibitor (PAI)-1" ], "offsets": [ [ 410, 449 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "5054" } ] }, { ...
[]
[]
[]
24
14747301
[ { "id": "0eb288ed-031a-4223-bd62-bcfb75d6df76", "type": "title", "text": [ "Uncoupling protein 2 promoter polymorphism -866G/A affects its expression in beta-cells and modulates clinical profiles of Japanese type 2 diabetic patients." ], "offsets": [ [ 0, 160 ...
[ { "id": "1ca3c0f7-9474-4939-9cff-d12ffa747eb4", "type": "gene", "text": [ "UCP2" ], "offsets": [ [ 191, 195 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7351" } ] }, { "id": "274c2781-40be-4fdd-8ff2-1cb...
[]
[]
[]
25
14749980
[ { "id": "78fc68cc-0306-4985-b865-2e1a9f5e39b2", "type": "title", "text": [ "Association of TAP2 gene polymorphisms in Chinese patients with rheumatoid arthritis." ], "offsets": [ [ 0, 87 ] ] }, { "id": "0369aa6c-b8ac-4e92-bde3-0cbbb9b33511", "t...
[ { "id": "5b57b373-082e-433a-bab7-9a0fc5782890", "type": "gene", "text": [ "TAP1" ], "offsets": [ [ 224, 228 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "6890" } ] }, { "id": "1479f5b5-51c0-4c12-bc63-c16...
[]
[]
[]
26
14752243
[ { "id": "b51de786-9344-4b07-8ad7-4890e41ff115", "type": "title", "text": [ "MDR1 haplotypes modify BEN disease risk: a study in Bulgarian patients with Balkan endemic nephropathy compared to healthy controls." ], "offsets": [ [ 0, 133 ] ] }, { "id":...
[ { "id": "307f4183-7b82-4d3f-920d-6335ed73ecd5", "type": "gene", "text": [ "MDR1" ], "offsets": [ [ 0, 4 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "5243" } ] }, { "id": "b0c1cc2f-bc09-4b0d-b96e-15d9de9...
[]
[]
[]
27
14755442
[ { "id": "2e350ae6-ed7b-4556-9ec1-1e2d44ad9d88", "type": "title", "text": [ "TNXB locus may be a candidate gene predisposing to schizophrenia." ], "offsets": [ [ 0, 66 ] ] }, { "id": "f4da333a-b734-4850-938f-9abed7db1fc1", "type": "abstract", ...
[ { "id": "979e83f7-915a-4b78-9729-8714e25ba13a", "type": "gene", "text": [ "NOTCH4" ], "offsets": [ [ 159, 165 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "4855" } ] }, { "id": "a6a6e5c7-b0b5-48f4-93bb-f...
[]
[]
[]
28
14755445
[ { "id": "dce5b786-ef90-40d9-8943-ac5dc8e2b3f5", "type": "title", "text": [ "No association between the APOE gene and autism." ], "offsets": [ [ 0, 50 ] ] }, { "id": "3c31c46e-3b7f-4c5e-b7f4-0322aa3d53b6", "type": "abstract", "text": [ ...
[ { "id": "bf24c118-1fd4-47ed-a216-a3d861a3fbd2", "type": "gene", "text": [ "apolipoprotein E " ], "offsets": [ [ 340, 357 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "348" } ] }, { "id": "a37bd779-e7e7-4...
[]
[]
[]
29
14755451
[ { "id": "6e7866bc-4ec0-4536-943c-f7d1a5fe251f", "type": "title", "text": [ "No association between the insulin degrading enzyme gene and Alzheimer's disease in a Japanese population." ], "offsets": [ [ 0, 108 ] ] }, { "id": "2f7da9c6-a9c0-4785-9b90...
[ { "id": "52b0878f-69fc-4e8d-84a0-404a575cd721", "type": "gene", "text": [ "insulin degrading enzyme" ], "offsets": [ [ 28, 52 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3416" } ] }, { "id": "1a65d751-...
[]
[]
[]
30
14764791
[ { "id": "479440f6-a6d3-4d95-870e-ede175c4d2e0", "type": "title", "text": [ "Common variants in glutamine:fructose-6-phosphate amidotransferase 2 ( GFPT2 ) gene are associated with type 2 diabetes, diabetic nephropathy, and increased GFPT2 mRNA levels." ], "offsets": [ [ 0...
[ { "id": "591195b4-1322-4b34-904e-3716fbbfe0cf", "type": "gene", "text": [ "insulin" ], "offsets": [ [ 274, 281 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3630" } ] }, { "id": "ea436d0d-cc9f-405e-bad8-...
[]
[]
[]
31
14871556
[ { "id": "58b6c2f3-70f0-4100-999e-d1f7302341ec", "type": "title", "text": [ "KCNJ11 polymorphisms and sudden cardiac death in patients with acute myocardial infarction." ], "offsets": [ [ 0, 92 ] ] }, { "id": "c5225926-b19b-4416-9320-31c24294b3c1", ...
[ { "id": "14fdd76a-c70b-475e-8fcf-92228ecf511b", "type": "gene", "text": [ "KCNJ11" ], "offsets": [ [ 0, 6 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3767" } ] }, { "id": "460598ef-1edb-41c2-a8d7-80873...
[]
[]
[]
32
14872030
[ { "id": "02470daf-ffbd-4ad9-84af-64051fb1261a", "type": "title", "text": [ "Functional MxA promoter polymorphism associated with subacute sclerosing panencephalitis." ], "offsets": [ [ 0, 91 ] ] }, { "id": "9065d996-bfad-420f-a762-9d86a1f34a27", ...
[ { "id": "f032e12d-f995-4701-9b96-289b4f50275e", "type": "gene", "text": [ "MxA" ], "offsets": [ [ 12, 15 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "4599" } ] }, { "id": "9f7a30c7-9012-4e38-9992-f093e0...
[]
[]
[]
33
14961571
[ { "id": "e5daca47-e7df-4c8f-8643-90ee6bb04752", "type": "title", "text": [ "-160C/A polymorphism in the E-cadherin gene promoter and risk of hereditary, familial and sporadic prostate cancer." ], "offsets": [ [ 0, 118 ] ] }, { "id": "9666e576-c959...
[ { "id": "7c8925dd-a0d1-4650-9086-3c91b6b08f47", "type": "gene", "text": [ "E-cadherin" ], "offsets": [ [ 30, 40 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "999" } ] }, { "id": "11a32dcf-650a-44fc-a4c3-...
[]
[]
[]
34
14961572
[ { "id": "29b88d37-ade0-4b72-ac71-be3459c495ac", "type": "title", "text": [ "Polymorphisms of the interleukin-1 beta gene are associated with increased risk of non-small cell lung cancer." ], "offsets": [ [ 0, 112 ] ] }, { "id": "a7d6a9a3-a57f-48a9-...
[ { "id": "e993f6cc-ebae-4329-a8d4-3ae0f376ab48", "type": "gene", "text": [ "IL1B" ], "offsets": [ [ 488, 492 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3553" } ] }, { "id": "d91fb3a5-952f-46a3-86b2-152...
[]
[]
[]
35
14962090
[ { "id": "2f81e8b5-7a81-45cf-af8a-c86e64559192", "type": "title", "text": [ "Evaluation of the IRF-2 gene as a candidate for PSORS3 ." ], "offsets": [ [ 0, 59 ] ] }, { "id": "b650eebb-c339-404b-bb72-caec3b3efdca", "type": "abstract", "text"...
[ { "id": "0f3b7642-de09-4db1-8bac-dca4f470721d", "type": "gene", "text": [ "PSORS3" ], "offsets": [ [ 51, 57 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7889" } ] }, { "id": "4cd3cb31-d04f-48c8-ad45-5d2...
[]
[]
[]
36
14962947
[ { "id": "e55ad154-2de0-4942-a346-b37492cfbde6", "type": "title", "text": [ "In-depth haplotype analysis of ABCA1 gene polymorphisms in relation to plasma ApoA1 levels and myocardial infarction." ], "offsets": [ [ 0, 121 ] ] }, { "id": "42f5a3a9-5...
[ { "id": "8407fa01-c4a9-490c-91c1-483fa91b757f", "type": "gene", "text": [ "ABCA1" ], "offsets": [ [ 32, 37 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "19" } ] }, { "id": "b46306c4-8a09-4965-b2b0-6b4234...
[]
[]
[]
37
14970360
[ { "id": "11deea42-5057-47d5-b026-eb8baa9ddd54", "type": "title", "text": [ "Three single-nucleotide polymorphisms of the angiotensinogen gene and susceptibility to hypertension: single locus genotype vs. haplotype analysis." ], "offsets": [ [ 0, 149 ] ] ...
[ { "id": "a8fb5dcc-3c11-4b16-ab49-6515d95fde0c", "type": "gene", "text": [ "angiotensinogen" ], "offsets": [ [ 46, 61 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "183" } ] }, { "id": "1d4ec668-d9e4-4d05-...
[]
[]
[]
38
14970363
[ { "id": "37baa1f1-70df-4026-8b27-7e65235c2007", "type": "title", "text": [ "Tests of linkage and/or association of the LEPR gene polymorphisms with obesity phenotypes in Caucasian nuclear families." ], "offsets": [ [ 0, 123 ] ] }, { "id": "ca9b2d85...
[ { "id": "4ed6c30a-4a63-45a3-b055-8f73ef698547", "type": "gene", "text": [ "leptin receptor" ], "offsets": [ [ 151, 166 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3953" } ] }, { "id": "ef6f835e-347f-4b...
[]
[]
[]
39
14970845
[ { "id": "5e624c83-2f60-4c71-8ac1-d8fabaafde3e", "type": "title", "text": [ "Polymorphisms in the prion protein gene and in the doppel gene increase susceptibility for Creutzfeldt-Jakob disease." ], "offsets": [ [ 0, 121 ] ] }, { "id": "e1ba8a65-5...
[ { "id": "e6604dd1-3939-426e-9d65-9899185eec37", "type": "gene", "text": [ "prion protein gene" ], "offsets": [ [ 22, 40 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "5621" } ] }, { "id": "964aaef6-8390-4...
[]
[]
[]
40
14973548
[ { "id": "12d8b008-fae3-4864-9c41-2c895b0a9b9f", "type": "title", "text": [ "Is there a future for TNF promoter polymorphisms?" ], "offsets": [ [ 0, 51 ] ] }, { "id": "bec64891-6f01-4367-80cb-9ac857ddcc8b", "type": "abstract", "text": [ ...
[ { "id": "4b9f7980-5644-4f59-802e-7683705ed369", "type": "gene", "text": [ "TNF" ], "offsets": [ [ 23, 26 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7124" } ] }, { "id": "f1dfb0fc-70d7-493e-be0e-649486...
[]
[]
[]
41
14973783
[ { "id": "d25db1e8-e142-4440-9bb8-3ac8bfc48829", "type": "title", "text": [ "Melanocortin-4 receptor gene variant I103 is negatively associated with obesity." ], "offsets": [ [ 0, 83 ] ] }, { "id": "d52006e2-8f4f-41d7-b000-75348fe8f57d", "type"...
[ { "id": "c9a6c41b-219f-424f-9ab9-fe61fd31c76a", "type": "gene", "text": [ "melanocortin-4 receptor gene (MC4R)" ], "offsets": [ [ 115, 150 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "4160" } ] }, { "id...
[]
[]
[]
42
14975928
[ { "id": "b8e83b12-1e5a-4309-9728-a4e75a03bea6", "type": "title", "text": [ "Molecular and functional characterization of common polymorphisms in HERG (KCNH2) ) potassium channels." ], "offsets": [ [ 0, 104 ] ] }, { "id": "d91b6872-f987-4c97-8e64-d03...
[ { "id": "25dd7fe5-b936-4a98-ab61-cfa6ba0f338d", "type": "gene", "text": [ "HERG" ], "offsets": [ [ 70, 74 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "3757" } ] }, { "id": "766c0ddb-9d43-4748-ba39-68766...
[]
[]
[]
43
14979495
[ { "id": "f8683426-8805-469e-aa9b-9990da521bdc", "type": "title", "text": [ "The Arg753GLn polymorphism of the human toll-like receptor 2 gene in tuberculosis disease." ], "offsets": [ [ 0, 94 ] ] }, { "id": "e6b65436-1e48-4e4b-9133-f1eb0a3bb835",...
[ { "id": "e477a154-5dbb-4f6f-80a0-44e5f4d1c040", "type": "gene", "text": [ "Toll-like receptor 2 (TLR2)" ], "offsets": [ [ 95, 122 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7097" } ] }, { "id": "2af06...
[]
[]
[]
44
14986114
[ { "id": "ff0cef8d-c475-4e96-a012-b88349d15ab8", "type": "title", "text": [ "A single nucleotide polymorphism in the MMP-1 promoter is correlated with histological differentiation of gastric cancer." ], "offsets": [ [ 0, 123 ] ] }, { "id": "f91062e5...
[ { "id": "8b52b6d3-b863-4b86-a4ec-19717d63fa8d", "type": "gene", "text": [ "Matrix metalloproteinase-1" ], "offsets": [ [ 134, 160 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "4312" } ] }, { "id": "af7bc...
[]
[]
[]
45
14986169
[ { "id": "3d16e7b5-139f-47c6-a620-7ff60c1bb06e", "type": "title", "text": [ "Association of the T-cell regulatory gene CTLA4 with Graves' disease and autoimmune thyroid disease in the Japanese." ], "offsets": [ [ 0, 118 ] ] }, { "id": "aab3d27b-502a...
[ { "id": "20a8550c-99a2-47ee-a48f-5c60be77a670", "type": "gene", "text": [ "cytotoxic T-lymphocyte antigen-4" ], "offsets": [ [ 215, 247 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "1493" } ] }, { "id": ...
[]
[]
[]
46
15007371
[ { "id": "6c116e57-9a3c-4832-9595-2064f69c3e1c", "type": "title", "text": [ "A functional C-G polymorphism in the CYP7B1 promoter region and its different distribution in Orientals and Caucasians." ], "offsets": [ [ 0, 121 ] ] }, { "id": "00fe5f1d-f...
[ { "id": "aed5f1bc-7377-40da-8675-385389843407", "type": "gene", "text": [ "Cytochrome P450 (CYP) 7B1" ], "offsets": [ [ 122, 147 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "9420" } ] }, { "id": "93ed21...
[]
[]
[]
47
15007729
[ { "id": "eb0da0df-edac-4e4e-995e-f8d46c640f09", "type": "title", "text": [ "Fine mapping of the 2p11 dyslexia locus and exclusion of TACR1 as a candidate gene." ], "offsets": [ [ 0, 85 ] ] }, { "id": "f72f0e84-492b-4f35-9eb5-bad0e55ef190", "typ...
[ { "id": "296ed6b2-1396-4ba7-9b86-99d08c404c83", "type": "gene", "text": [ "DYX1C1" ], "offsets": [ [ 281, 287 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "161582" } ] }, { "id": "c155db4d-b23c-4512-b663...
[]
[]
[]
48
15008790
[ { "id": "a671c667-10ec-4931-9fa2-15774e222cfe", "type": "title", "text": [ "Population differences in DNA sequence variation and linkage disequilibrium at the PON1 gene." ], "offsets": [ [ 0, 95 ] ] }, { "id": "bda16d5d-992f-4a63-aeee-b87eebbd5d26"...
[ { "id": "321a2115-09f6-4755-9600-33f16acb1976", "type": "gene", "text": [ "paraoxonase 1 gene" ], "offsets": [ [ 186, 204 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "5444" } ] }, { "id": "2754341f-812b...
[]
[]
[]
49
15009068
[ { "id": "3e2ae00d-8b54-4b23-8da0-a9bf942eeaf0", "type": "title", "text": [ "Single nucleotide polymorphisms of the inflammatory cytokine genes in adults with chronic immune thrombocytopenic purpura." ], "offsets": [ [ 0, 122 ] ] }, { "id": "601e8809-...
[ { "id": "a7df69f5-f580-46f3-add9-81f965be0276", "type": "gene", "text": [ "tumour necrosis factor (TNF)-alpha" ], "offsets": [ [ 376, 410 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "7124" } ] }, { "id"...
[]
[]
[]
50
15022318
[ { "id": "e27591f3-867c-4920-a81e-2aeebdd203e2", "type": "title", "text": [ "Association of a programmed death 1 gene polymorphism with the development of rheumatoid arthritis, but not systemic lupus erythematosus." ], "offsets": [ [ 0, 139 ] ] }, { ...
[ { "id": "1d574fe0-5928-40c7-a7b9-082c2c676ca7", "type": "gene", "text": [ "programmed death 1" ], "offsets": [ [ 18, 36 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "5133" } ] }, { "id": "8af6de55-54e8-4...
[]
[]
[]
51
15024396
[ { "id": "89e6cf82-e158-45db-b937-96dc3c9968a5", "type": "title", "text": [ "Association of the homeobox transcription factor, ENGRAILED 2 , 3, with autism spectrum disorder." ], "offsets": [ [ 0, 98 ] ] }, { "id": "a1195aab-d093-426c-997a-f1cdbcebe3...
[ { "id": "32aa6426-30a5-4f7b-905f-691fbfbd2d06", "type": "gene", "text": [ "EN2" ], "offsets": [ [ 328, 331 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "2020" } ] }, { "id": "462429db-c84e-4d82-a0ad-d5a1...
[]
[]
[]
52
15024686
[ { "id": "7e078deb-9cab-465e-92bf-bfa2e76b913f", "type": "title", "text": [ "Crohn disease: frequency and nature of CARD15 mutations in Ashkenazi and Sephardi/Oriental Jewish families." ], "offsets": [ [ 0, 109 ] ] }, { "id": "323a392e-a2f5-4467-acd...
[ { "id": "eb4f924b-49c3-4384-bbf1-a540162c541a", "type": "gene", "text": [ "CARD15" ], "offsets": [ [ 40, 46 ] ], "normalized": [ { "db_name": "NCBI Gene", "db_id": "64127" } ] }, { "id": "29c85447-4ae5-4e21-b416-b8...
[]
[]
[]
End of preview. Expand in Data Studio

Dataset Card for OSIRIS

The OSIRIS corpus is a set of MEDLINE abstracts manually annotated with human variation mentions. The corpus is distributed under the terms of the Creative Commons Attribution License Creative Commons Attribution 3.0 Unported License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited (Furlong et al, BMC Bioinformatics 2008, 9:84).

Citation Information

@ARTICLE{Furlong2008,
  author = {Laura I Furlong and Holger Dach and Martin Hofmann-Apitius and Ferran Sanz},
  title = {OSIRISv1.2: a named entity recognition system for sequence variants
  of genes in biomedical literature.},
  journal = {BMC Bioinformatics},
  year = {2008},
  volume = {9},
  pages = {84},
  doi = {10.1186/1471-2105-9-84},
  pii = {1471-2105-9-84},
  pmid = {18251998},
  timestamp = {2013.01.15},
  url = {http://dx.doi.org/10.1186/1471-2105-9-84}
}
Downloads last month
30