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Обработка пропусков
train_df.isnull().sum() train_df[['Square', 'LifeSquare', 'KitchenSquare']].head(10)
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
**LifeSquare**
# медиана до корректировки train_df['LifeSquare'].median() # медиана расхождения площадей square_med_diff = (train_df.loc[train_df['LifeSquare'].notnull(), 'Square'] - train_df.loc[train_df['LifeSquare'].notnull(), 'LifeSquare'] - train_df.loc[train_df['LifeSquare'].notnull(), 'Kit...
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
**Healthcare_1**
train_df['Healthcare_1'].head() train_df.loc[train_df['Healthcare_1'].isnull(), 'Healthcare_1'] = train_df['Healthcare_1'].median()
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
Построение новых признаков **Dummies**
train_df['Ecology_2_bin'] = train_df['Ecology_2'].replace({'A':0, 'B':1}) train_df['Ecology_3_bin'] = train_df['Ecology_3'].replace({'A':0, 'B':1}) train_df['Shops_2_bin'] = train_df['Shops_2'].replace({'A':0, 'B':1})
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
**DistrictSize, IsDistrictLarge**
train_df['DistrictId'].value_counts() district_size = train_df['DistrictId'].value_counts().reset_index()\ .rename(columns={'index':'DistrictId', 'DistrictId':'DistrictSize'}) district_size.head() train_df = train_df.merge(district_size, on='DistrictId', how='left') train_df.head() (train_df['DistrictSi...
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
**MedPriceByDistrict**
med_price_by_district = train_df.groupby(['DistrictId', 'Rooms'], as_index=False).agg({'Price':'median'})\ .rename(columns={'Price':'MedPriceByDistrict'}) med_price_by_district.head() train_df = train_df.merge(med_price_by_district, on=['DistrictId', 'Rooms'], how='left') train_df.head() train_d...
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
*Пример переноса признака на test*
test_df['DistrictId'] = test_df['DistrictId'].astype(str) test_df.merge(med_price_by_district, on=['DistrictId', 'Rooms'], how='left').info()
<class 'pandas.core.frame.DataFrame'> Int64Index: 5000 entries, 0 to 4999 Data columns (total 20 columns): Id 5000 non-null int64 DistrictId 5000 non-null object Rooms 5000 non-null float64 Square 5000 non-null float64 LifeSquare 3959 non-null floa...
MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
Отбор признаков
train_df.columns.tolist() feature_names = ['Rooms', 'Square', 'LifeSquare', 'KitchenSquare', 'Floor', 'HouseFloor', 'HouseYear', 'Ecology_1', 'Ecology_2_bin', 'Ecology_3_bin', 'Social_1', 'Social_2', 'Social_3', 'Healthcare_1', 'Helthcare_2', 'Shops_1', 'Shops_2_bin'] new_feature_name...
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
Разбиение на train и val
X = train_df[feature_names + new_feature_names] y = train_df[target_name] X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.33, shuffle=True, random_state=21)
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
Построение модели **Обучение и оценка модели**
rf_model = RandomForestRegressor(random_state=21) rf_model.fit(X_train, y_train)
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
**Отложенная выборка**
y_train_preds = rf_model.predict(X_train) y_test_preds = rf_model.predict(X_test) evaluate_preds(y_train, y_train_preds, y_test, y_test_preds)
Train R2: 0.952 Valid R2: 0.671
MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
**Перекрёстная проверка**
cv_score = cross_val_score(rf_model, X, y, scoring='r2', cv=KFold(n_splits=3, shuffle=True, random_state=21)) cv_score cv_score.mean()
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
XGBoost
from xgboost import XGBRegressor xgb = xgboost.XGBRegressor(n_estimators=500, learning_rate=0.08, gamma=0, subsample=0.75, colsample_bytree=1, max_depth=7, objective ='reg:squarederror') xgb.fit(X_train, y_train) y_train_preds = xgb.predict(X_train) y_test_preds = xgb.predict(X_test) evalu...
Train R2: 0.917 Test R2: 0.714
MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
**Важность признаков**
feature_importances = pd.DataFrame(zip(X_train.columns, rf_model.feature_importances_), columns=['feature_name', 'importance']) feature_importances.sort_values(by='importance', ascending=False)
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MIT
Web06.ipynb
gera09/Numpy_Matplotlib_Scikit-learn
Crear un subconjunto de datos
account_length = data["Account Length"] account_length.head() (type)(account_length) subset = data[["Account Length", "Phone", "Eve Charge", "Day Calls"]] subset.head() desired_columns = ["Account Length", "Phone", "Eve Charge", "Night Calls"] subset = data[desired_columns] subset.head() desired_columns = ["Account Len...
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MIT
notebooks/T2 -1 - Data Cleaning - Data Wrangling.ipynb
neovanorphen/data_science_course
Generación de números aleatorios
import numpy as np np.random.randint(1,100) np.random.random() def randint_list(n, a, b): x = [] for i in range(n): x.append(np.random.randint(a,b)) return x randint_list(25, 1, 50) import random random.randrange(0,100,7) a = np.arange(100) a np.random.shuffle(a) a col_list = data.columns.values.tol...
0.8823493117539459 0.10432773786047767 0.9070093335163405 0.3063988986063515 0.446408872427422
MIT
notebooks/T2 -1 - Data Cleaning - Data Wrangling.ipynb
neovanorphen/data_science_course
Radial Velocity Orbit-fitting with RadVel Week 6, Intro-to-Astro 2021 Written by Ruben Santana & Sarah Blunt, 2018 Updated by Joey Murphy, June 2020 Updated by Corey Beard, July 2021 Background informationRadial velocity measurements tell us how the velocity of a star changes along the direction of our line of sight. ...
# allows us to see plots on the jupyter notebook %matplotlib inline # used to interact with operating system import os # models used by radvel for calculations, plotting, and model optimization import matplotlib import matplotlib.pyplot as plt import numpy as np import pandas as pd from scipy import optimize # for c...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
2. Importing and Plotting DataWhen you installed RadVel, some .csv files were placed in a directory on your computer called `radvel.DATADIR`. Let's read this data into Python using pandas.
# import data path = os.path.join(radvel.DATADIR,'epic203771098.csv') # path to data file data = pd.read_csv(path, index_col=0) # read data into pandas DataFrame print('Path to radvel.DATADIR: {}\n'.format(radvel.DATADIR)) print(data) # Let's print out the column names of the pandas DataFrame you just created (`...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
3. Finding a Significant Period Now, we will find probable orbital periods using a Lomb-Scargle periodogram. Periodograms are created using a Fourier transform, which is a mathematical process that takes in continuous time-based data and decomposes it into a combination of functions with various frequencies, as seen i...
def LombScarg(t,v,e,min_per=0.01,max_per=1000): #Calculate Generalized Lomb-Scargle periodogram and window function fmin = 1./max_per fmax = 1./min_per frequency, power = LombScargle(t, v, e).autopower(minimum_frequency=1/1000,maximum_frequency=1.,method='cython') per = 1/frequency #Identify ...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
4. Defining and Initializing Model Let's define a function that we will use to initialize the ``radvel.Parameters`` and ``radvel.RVModel`` objects.These will be our initial guesses of the planet parameters based on on the radial velocity measurements shown and periodogram shown above.
nplanets = 1 # number of planets def initialize_model(): time_base = 2420. params = radvel.Parameters(nplanets,basis='per tc secosw sesinw k') params['per1'] = radvel.Parameter(value=period1) # Insert our guess for period of first planet (from periodogram) params['tc1'] = radvel.Parameter(va...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Fit the K2-24 RV data assuming circular orbits.Set initial guesses for the parameters:
mod = initialize_model() # model initiliazed like = radvel.likelihood.RVLikelihood(mod, data.t, data.vel, data.errvel, '_HIRES') # initialize Likelihood object # define initial guesses for instrument-related parameters like.params['gamma_HIRES'] = radvel.Parameter(value=0.1) # zero-point radial velocity offset like.pa...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Plot the model with our initial parameter guesses:
def plot_results(like): fig = plt.figure(figsize=(12,4)) fig = plt.gcf() fig.set_tight_layout(True) plt.errorbar( like.x, like.model(data.t.values)+like.residuals(), yerr=like.yerr, fmt='o' ) ti = np.linspace(data.t.iloc[0] - 5, data.t.iloc[-1] + 5,100) # time array for...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
5. Maximum Likelihood fit Well, that solution doesn't look very good! Let's optimize the parameters set to vary by maximizing the likelihood.Initialize a ``radvel.Posterior`` object.
post = radvel.posterior.Posterior(like) # initialize radvel.Posterior object
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Choose which parameters to change or hold fixed during a fit. By default, all `radvel.Parameter` objects will vary, so you only have to worry about setting the ones you want to hold fixed.
post.likelihood.params['secosw1'].vary = False # set as false because we are assuming circular orbit post.likelihood.params['sesinw1'].vary = False # set as false because we are assuming circular orbit print(like)
parameter value vary per1 43.8487 True tc1 2080 True secosw1 0 False sesinw1 0 False k1 3 True dvdt -0.02 ...
MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Maximize the likelihood and print the updated posterior object
res = optimize.minimize( post.neglogprob_array, # objective function is negative log likelihood post.get_vary_params(), # initial variable parameters method='Powell', # Nelder-Mead also works ) plot_results(like) # plot best fit model print(post)
parameter value vary per1 49.0164 True tc1 2080.57 True secosw1 0 False sesinw1 0 False k1 3.81242 True dvdt -0.0843784 ...
MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
RadVel comes equipped with some fancy ready-made plotting routines. Check this out!
matplotlib.rcParams['font.size'] = 12 RVPlot = orbit_plots.MultipanelPlot(post) RVPlot.plot_multipanel() matplotlib.rcParams['font.size'] = 18
NOTE: This version of radvel has been modified to NOT include jitters in errorbars.
MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
6. Residuals and RepeatResiduals are the difference of our data and our best-fit model. Next, we will plot the residuals of our optimized model to see if there is a second planet in our data. When we look at the following residuals, we will see a sinusoidal shape, so another planet may be present! Thus, we will repeat...
residuals1 = post.likelihood.residuals() # Let's make a plot of data.time versus `residuals1` plt.figure() plt.scatter(data.t, residuals1) plt.xlabel('time [MJD]') plt.ylabel('RV [m/s]') plt.show() # TODO: What do you notice? What would you estimate the period # of the other exoplanet in this system to be? Write you...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Let's repeat the above analysis with two planets!
nyquist = 2 # maximum sampling rate minPer = 20 # minimum period to look for 2nd planet maxPer = 30 # max period to look for 2nd planet # finding 2nd planet period period, power, period2 = LombScarg(data.t, data.vel, data.errvel, min_per=minPer, max_per=maxPer) # finding possible periords for 2nd planet period, power...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Repeat the RadVel analysis
nplanets = 2 # number of planets def initialize_model(): time_base = 2420 params = radvel.Parameters(nplanets,basis='per tc secosw sesinw k') # 1st Planet params['per1'] = post.params['per1'] # period of 1st planet params['tc1'] = post.params['tc1'] # time transit of 1st planet ...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
K2-24 only has two known exoplanets so will stop this part of our analysis here. However, when analzying an uncharacterized star system, it's important to continue the analysis until we see no significant reduction in the residuals of the radial velocity. 7. Markov Chain Monte Carlo (MCMC)After reading the intro to M...
# TODO: edit the Markdown cell immediately above this one with a 3 sentence description of the MCMC method. # What does MCMC do? Why do you think it is important to use MCMC to characterize uncertainties in radial # velocity fits?
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Let's use RadVel to perform an MCMC fit:
df = radvel.mcmc(post, nwalkers=50, nrun=1000) # TODO: What type of data structure is `df`, the object returned by RadVel's MCMC method? """ It is a pandas dataframe """
20000/400000 (5.0%) steps complete; Running 15855.08 steps/s; Mean acceptance rate = 48.2%; Min Auto Factor = 19; Max Auto Relative-Change = inf; Min Tz = 6614.6; Max G-R = 1.004 Discarding burn-in now that the chains are marginally well-mixed 400000/400000 (100.0%) steps complete; Running 15030.55 steps/s; Mean ac...
MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
Make a fun plot!
Corner = mcmc_plots.CornerPlot(post, df) Corner.plot() # TODO: There is a lot going on in this plot. What do you think the off-diagonal boxes are showing? # What about the on-diagonal boxes? What is the median period of the first planet? # What is the uncertainty on the period of the first planet? The second plane...
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MIT
Week6_radvel_fitting/Key.ipynb
chetanchawla/Intro-to-Astro-2021
2019-07-28* Got some framework up to do coupling layers but having trouble passing the scale parameter to the loss function, getting some weird tensorflow error, needs more debugging* Without the determinant in the loss function, it looks like loss goes down, so maybe on the right track? * It's actually weird that ...
from scipy.stats import norm for i in range(-10, 10): eps = i / 1000 l = norm.cdf(0 - eps) r = norm.cdf(0 + eps) print(eps, '\t', l - r) a = np.array([[[-1, -2], [-3, -4]], [[1,2], [3, 4]], [[5,6], [7, 8]]]) b = np.array([100, 200]).reshape([1, 1, 2]) c = a + b c[:, :, :]
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MIT
realnvp/Simple Gaussian Test.ipynb
bjlkeng/sandbox
Problem H: Gold MiningReply the maximum sum of gold mines, that can be mined with single well. Input- Number of test case + N: Number of gold layer + N lines (x1, x2, y) start, stop and depth of the gold layer Outputfor each test case- 1/3 of total length of gold layer that can be mined with single well (2 d...
#!/usr/bin/python3 # -*- coding: utf-8 -*- ''' MCPC 2018 Problem-H: Gold Mining ''' import sys def check_mines(mines, p1, p2): ''' mines: list of tuple (x1, x2, y) p1, p2: tuple (x,y) return: total length of mines on the p1-p2 line ''' total_len = 0 slope_p1_p2 = (p2[0]-p1[0]) / (p2[1]-...
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MIT
How_to_solve_Problem_H.ipynb
ShinjiKatoA16/mcpc2018ucsy
Calculating a custom statistic This example shows how to define and use a custom `iris.analysis.Aggregator`, that provides a new statistical operator foruse with cube aggregation functions such as `~iris.cube.Cube.collapsed`, `~iris.cube.Cube.aggregated_by` or `~iris.cube.Cube.rolling_window`.In this case, we have a 2...
import numpy as np from iris.util import rolling_window def count_spells(data, threshold, axis, spell_length): """ Function to calculate the number of points in a sequence where the value has exceeded a threshold value for at least a certain number of timepoints. Generalised to operate on multiple time...
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Apache-2.0
examples/iris/custom-statistic.ipynb
RETURN-project/eucp
Load the whole time-sequence as a single cube.
import iris file_path = iris.sample_data_path('E1_north_america.nc') cube = iris.load_cube(file_path) cube
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Apache-2.0
examples/iris/custom-statistic.ipynb
RETURN-project/eucp
Make an aggregator from the user function.
from iris.analysis import Aggregator SPELL_COUNT = Aggregator('spell_count', count_spells, units_func=lambda units: 1)
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Apache-2.0
examples/iris/custom-statistic.ipynb
RETURN-project/eucp
Define the parameters of the test.
threshold_temperature = 280.0 spell_years = 5
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Apache-2.0
examples/iris/custom-statistic.ipynb
RETURN-project/eucp
Calculate the statistic.
warm_periods = cube.collapsed('time', SPELL_COUNT, threshold=threshold_temperature, spell_length=spell_years) warm_periods.rename('Number of 5-year warm spells in 240 years') warm_periods
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Apache-2.0
examples/iris/custom-statistic.ipynb
RETURN-project/eucp
Plot the results.
%matplotlib inline import iris.quickplot as qplt import matplotlib.pyplot as plt from matplotlib import rcParams rcParams['figure.figsize'] = [12, 8] qplt.contourf(warm_periods, cmap='RdYlBu_r') plt.gca().coastlines();
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Apache-2.0
examples/iris/custom-statistic.ipynb
RETURN-project/eucp
plot windparks: either all with opacity or aggregate to windparks and maybe use size as capacity indicator?
fig, ax = plt.subplots(figsize = (9,7)) ax.set_xlim(-180,-65) ax.set_ylim(20,75) shpUSA.plot(color=COLORS[4],ax=ax) plt.plot(wpUSA.xlong,wpUSA.ylat,'o',alpha=0.1,markersize=2) import xarray as xr from matplotlib.patches import Rectangle NZera5 = xr.open_dataset(era_path + '/NZ/era5_wind_NZ_198701.nc') NZmerra2 = xr.ope...
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MIT
plot_maps.ipynb
KatharinaGruber/windpower_GWA
Test CoffeaThis will test Coffea to see if we can figure out how to use it with our code.First are the includes from coffea. This is based on the [example written by Ben](https://github.com/CoffeaTeam/coffea/blob/master/binder/servicex/ATLAS/LocalExample.ipynb).
from servicex import ServiceXDataset from coffea.processor.servicex import DataSource, Analysis from coffea.processor.servicex import LocalExecutor import matplotlib.pyplot as plt from coffea import hist, processor from IPython.display import display, update_display, HTML
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MIT
notebooks/atlas-demo-coffea.ipynb
oshadura/opendata-higgs-discovery
And imports connected with running servicex.
from func_adl import ObjectStream from func_adl_servicex import ServiceXSourceUpROOT from hist import Hist import mplhep as mpl import awkward as ak from utils import files
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MIT
notebooks/atlas-demo-coffea.ipynb
oshadura/opendata-higgs-discovery
Methods copied to help us get all leptons from the source files
def apply_event_cuts (source: ObjectStream) -> ObjectStream: '''Event level cuts for the analysis. Keep from sending data that we aren't going to need at all in the end. ''' return (source .Where(lambda e: e.trigE or e.trigM)) def good_leptons(source: ObjectStream) -> ObjectStream: '''Sele...
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MIT
notebooks/atlas-demo-coffea.ipynb
oshadura/opendata-higgs-discovery
Create the `func_adl` cuts to get the data. The dataset we use here doesn't matter, as long as it "looks" like all the datasets we are going to be processing.
ds = ServiceXSourceUpROOT('cernopendata://dummy', files['ggH125_ZZ4lep']['treename'], backend_name='open_uproot') ds.return_qastle = True leptons = good_leptons(apply_event_cuts(ds))
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MIT
notebooks/atlas-demo-coffea.ipynb
oshadura/opendata-higgs-discovery
The analysis code that will apply the 4 lepton cuts and make the 4 lepton mass plot.
class ATLAS_Higgs_4L(Analysis): @staticmethod def process(events): import awkward as ak from collections import defaultdict sumw = defaultdict(float) mass_hist = hist.Hist( "Events", hist.Cat("dataset", "Dataset"), hist.Bin("mass", "...
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MIT
notebooks/atlas-demo-coffea.ipynb
oshadura/opendata-higgs-discovery
Create the data source that we will be running against.
def make_ds(name: str, query: ObjectStream): '''Create a ServiceX Datasource for a particular ATLAS Open data file ''' datasets = [ServiceXDataset(files[name]['files'], backend_name='open_uproot')] return DataSource(query=query, metadata={'dataset': name}, datasets=datasets)
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MIT
notebooks/atlas-demo-coffea.ipynb
oshadura/opendata-higgs-discovery
And run!
analysis = ATLAS_Higgs_4L() # TODO: It would be good if datatype was determined automagically (there is enough info) executor = LocalExecutor() #executor = DaskExecutor(client_addr="tls://localhost:8786") datasource = make_ds('ggH125_ZZ4lep', leptons) async def run_updates_stream(accumulator_stream): global first ...
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MIT
notebooks/atlas-demo-coffea.ipynb
oshadura/opendata-higgs-discovery
dwtls: Discrete Wavelet Transform LayerSThis library provides downsampling (DS) layers using discrete wavelet transforms (DWTs), which we call DWT layers.Conventional DS layers lack either antialiasing filters and the perfect reconstruction property, so downsampled features are aliased and entire information of input ...
!pip install dwtls import torch import dwtls.dwt_layers
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MIT
examples/tutorial.ipynb
TomohikoNakamura/dwtls
DWT layers with fixed waveletsThe DWT layer (including its extensions) is implemeted as a subclass of `torch.nn.Module` provided by PyTorch, so we can easily use it in PyTorch-based scripts. Also, this layer is differentiable.
dwt_layer = dwtls.dwt_layers.DWT(wavelet="haar") feature = torch.normal(0.0, 1.0, size=(1,1,20)).float() output_feature = dwt_layer(feature) print('Input:', feature) print("Output:", output_feature)
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MIT
examples/tutorial.ipynb
TomohikoNakamura/dwtls
TDWT layerThe TDWT layer has trainable wavelets (precisely, predict and update filters of lifting scheme).For example, we can define the TDWT layer having a pair of the prediction and update filters initialized with Haar wavelet.
tdwt_layer = dwtls.dwt_layers.MultiStageLWT([ dict(predict_ksize=3, update_ksize=3, requires_grad={"predict": True, "update": True}, initial_values={"predict": [0,1,0], "update": [0,0.5,0]}) ])
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MIT
examples/tutorial.ipynb
TomohikoNakamura/dwtls
The `tdwt_layer._predict_weight` and `tdwt_layer._update_weight` of this layer are trainable jointly with other DNN components. We show three structures of the trainable DWT layers used in our music source separation paper [1]. [1] Tomohiko Nakamura, Shihori Kozuka, and Hiroshi Saruwatari, “Time-Domain Audio Source Se...
# Type A tdwt_layer = dwtls.dwt_layers.MultiStageLWT([ dict(predict_ksize=3, update_ksize=3, requires_grad={"predict": True, "update": True}, initial_values={"predict": [0,1,0], "update": [0,0.5,0]}) ]) # Type B tdwt_layer = dwtls.dwt_layers.MultiStageLWT([ dict(predict_ksize=1, update_ksize...
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MIT
examples/tutorial.ipynb
TomohikoNakamura/dwtls
WN-TDWT layerThe TDWT layer can be incorporated into many types of DNNs, but such straightforward extension does not guarantee that it has anti-aliasing filters, while it has the perfect reconstruction property owing to the lifting scheme.The WN-TDWT layer is developed to overcome this problem. It has both properties ...
# Type A tdwt_layer = dwtls.dwt_layers.WeightNormalizedMultiStageLWT([ dict(predict_ksize=3, update_ksize=3, requires_grad={"predict": True, "update": True}, initial_values={"predict": [0,1,0], "update": [0,0.5,0]}) ])
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MIT
examples/tutorial.ipynb
TomohikoNakamura/dwtls
Directed graphical modelsWe illustrate some basic properties of DGMs.
!pip install causalgraphicalmodels !pip install pgmpy from causalgraphicalmodels import CausalGraphicalModel import pgmpy import numpy as np import pandas as pd
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MIT
notebooks/sprinkler_pgm.ipynb
animesh-007/pyprobml
Make the model
sprinkler = CausalGraphicalModel( nodes=["cloudy", "rain", "sprinkler", "wet", "slippery"], edges=[ ("cloudy", "rain"), ("cloudy", "sprinkler"), ("rain", "wet"), ("sprinkler", "wet"), ("wet", "slippery") ] )
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MIT
notebooks/sprinkler_pgm.ipynb
animesh-007/pyprobml
Draw the model
# draw return a graphviz `dot` object, which jupyter can render out = sprinkler.draw() type(out) display(out) out.render()
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MIT
notebooks/sprinkler_pgm.ipynb
animesh-007/pyprobml
Display the factorization
print(sprinkler.get_distribution())
P(season)P(sprinkler|season)P(rain|season)P(wet|rain,sprinkler)P(slippery|wet)
MIT
notebooks/sprinkler_pgm.ipynb
animesh-007/pyprobml
D-separation
# check for d-seperation of two nodes sprinkler.is_d_separated("slippery", "cloudy", {"wet"})
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MIT
notebooks/sprinkler_pgm.ipynb
animesh-007/pyprobml
Extract CI relationships
# get all the conditional independence relationships implied by a CGM CI = sprinkler.get_all_independence_relationships() print(CI) records = [] for ci in CI: record = (ci[0], ci[1], ', '.join(x for x in ci[2])) records.append(record) print(records) df = pd.DataFrame(records, columns = ('X', 'Y', 'Z')) display(df)...
\begin{tabular}{lll} \toprule X & Y & Z \\ \midrule rain & sprinkler & cloudy \\ rain & slippery & wet \\ rain & slippery & sprinkler, wet \\ rain & slippery & cloudy, wet \\ ...
MIT
notebooks/sprinkler_pgm.ipynb
animesh-007/pyprobml
Inference
from pgmpy.models import BayesianModel from pgmpy.factors.discrete import TabularCPD # Defining the model structure. We can define the network by just passing a list of edges. model = BayesianModel([('C', 'S'), ('C', 'R'), ('S', 'W'), ('R', 'W'), ('W', 'L')]) # Defining individual CPDs. cpd_c = TabularCPD(variable=...
Finding Elimination Order: : 100%|██████████| 4/4 [00:00<00:00, 557.40it/s] Eliminating: W: 100%|██████████| 4/4 [00:00<00:00, 341.96it/s] Finding Elimination Order: : 100%|██████████| 3/3 [00:00<00:00, 710.42it/s] Eliminating: C: 100%|██████████| 3/3 [00:00<00:00, 435.59it/s] Finding Elimination Order: : 100%|████████...
MIT
notebooks/sprinkler_pgm.ipynb
animesh-007/pyprobml
Method4 DCT based DOST + Huffman encoding Import Libraries
import mne import numpy as np from scipy.fft import fft,fftshift import matplotlib.pyplot as plt from scipy.signal import butter, lfilter from scipy.signal import freqz from scipy import signal from scipy.fftpack import fft, dct, idct from itertools import islice import pandas as pd import os
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Apache-2.0
DOST_Huffman/DCT_DOST_Huffman_ACC.ipynb
BaiyingLu/Data-Compression-Toolbox
Preprocessing Data loading
acc = pd.read_csv('ACC.csv') acc = acc.iloc[1:] acc.columns = ['column1','column2','column3'] np.savetxt('acc.txt',acc) acc_c1 = acc["column1"] acc_c2 = acc["column2"] acc_c3 = acc["column3"] acc_array_c1 = acc_c1.to_numpy() #save the data into an ndarray acc_array_c2 = acc_c2.to_numpy() acc_array_c3 = acc_c3.to_num...
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Apache-2.0
DOST_Huffman/DCT_DOST_Huffman_ACC.ipynb
BaiyingLu/Data-Compression-Toolbox
Butterworth Filter to denoising
def butter_bandpass(lowcut, highcut, fs, order=5): nyq = 0.5 * fs low = lowcut / nyq high = highcut / nyq b, a = butter(order, [low, high], btype='band') return b, a def butter_bandpass_filter(data, lowcut, highcut, fs, order=5): b, a = butter_bandpass(lowcut, highcut, fs, order=order) y =...
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Apache-2.0
DOST_Huffman/DCT_DOST_Huffman_ACC.ipynb
BaiyingLu/Data-Compression-Toolbox
Transformation --- DCT based DOST
from scipy.fftpack import fft, dct aN1 = dct(rounded_signal1, type = 2, norm = 'ortho') aN2 = dct(rounded_signal2, type = 2, norm = 'ortho') aN3 = dct(rounded_signal3, type = 2, norm = 'ortho') def return_N(target): if target > 1: for i in range(1, int(target)): if (2 ** i >= target): ...
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Apache-2.0
DOST_Huffman/DCT_DOST_Huffman_ACC.ipynb
BaiyingLu/Data-Compression-Toolbox
Huffman Coding INSTRUCTION ON HOW TO COMPRESS THE DATA BY HUFFMAN CODING(I used the package "tcmpr 0.2" and "pyhuff 1.1". These two packages provided the same compression result. So here, we just use "tcmpr 0.2")1. Open your termial or git bash, enter "pip install tcmpr" to install the "tcmpr 0.2" package2. Enter the...
# Do Huffman encoding based on the instruction above # or run this trunk if this scratch locates in the same directory with the signal you want to encode os.system('tcmpr int_cN1.txt') os.system('tcmpr int_cN2.txt') os.system('tcmpr int_cN3.txt')
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Apache-2.0
DOST_Huffman/DCT_DOST_Huffman_ACC.ipynb
BaiyingLu/Data-Compression-Toolbox
Reconstruction
os.system('tcmpr -d int_cN1.txt.huffman') os.system('tcmpr -d int_cN2.txt.huffman') os.system('tcmpr -d int_cN3.txt.huffman') decoded_data1 = np.loadtxt(fname = "int_cN1.txt") decoded_data2 = np.loadtxt(fname = "int_cN2.txt") decoded_data3 = np.loadtxt(fname = "int_cN3.txt") recover_signal1 = decoded_data1 recover_sign...
The PRD is 3.16%
Apache-2.0
DOST_Huffman/DCT_DOST_Huffman_ACC.ipynb
BaiyingLu/Data-Compression-Toolbox
ElasticNet with RobustScaler **This Code template is for the regression analysis using a ElasticNet Regression and the feature rescaling technique RobustScaler in a pipeline** Required Packages
import warnings as wr import numpy as np import pandas as pd import seaborn as sns import matplotlib.pyplot as plt from sklearn.preprocessing import LabelEncoder from sklearn.pipeline import Pipeline from sklearn.preprocessing import RobustScaler from sklearn.model_selection import train_test_split from sk...
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
InitializationFilepath of CSV file
#filepath file_path= ""
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
List of features which are required for model training .
#x_values features=[]
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Target feature for prediction.
#y_value target=''
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Data FetchingPandas is an open-source, BSD-licensed library providing high-performance, easy-to-use data manipulation and data analysis tools.We will use panda's library to read the CSV file using its storage path.And we use the head function to display the initial row or entry.
df=pd.read_csv(file_path) #reading file df.head()#displaying initial entries print('Number of rows are :',df.shape[0], ',and number of columns are :',df.shape[1]) df.columns.tolist()
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Data PreprocessingSince the majority of the machine learning models in the Sklearn library doesn't handle string category data and Null value, we have to explicitly remove or replace null values. The below snippet have functions, which removes the null value if any exists. And convert the string classes data in the da...
def NullClearner(df): if(isinstance(df, pd.Series) and (df.dtype in ["float64","int64"])): df.fillna(df.mean(),inplace=True) return df elif(isinstance(df, pd.Series)): df.fillna(df.mode()[0],inplace=True) return df else:return df def EncodeX(df): return pd.get_du...
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Correlation MapIn order to check the correlation between the features, we will plot a correlation matrix. It is effective in summarizing a large amount of data where the goal is to see patterns.
plt.figure(figsize = (15, 10)) corr = df.corr() mask = np.triu(np.ones_like(corr, dtype = bool)) sns.heatmap(corr, mask = mask, linewidths = 1, annot = True, fmt = ".2f") plt.show() correlation = df[df.columns[1:]].corr()[target][:] correlation
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Feature SelectionsIt is the process of reducing the number of input variables when developing a predictive model. Used to reduce the number of input variables to both reduce the computational cost of modelling and, in some cases, to improve the performance of the model.We will assign all the required input features to...
#spliting data into X(features) and Y(Target) X=df[features] Y=df[target]
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Calling preprocessing functions on the feature and target set.
x=X.columns.to_list() for i in x: X[i]=NullClearner(X[i]) X=EncodeX(X) Y=NullClearner(Y) X.head()
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Data SplittingThe train-test split is a procedure for evaluating the performance of an algorithm. The procedure involves taking a dataset and dividing it into two subsets. The first subset is utilized to fit/train the model. The second subset is used for prediction. The main motive is to estimate the performance of th...
#we can choose randomstate and test_size as over requerment X_train, X_test, y_train, y_test = train_test_split(X, Y, test_size = 0.2, random_state = 1) #performing datasplitting
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Model Data Scaling **Used RobustScaler** * It scales features using statistics that are robust to outliers. * This method removes the median and scales the data in the range between 1st quartile and 3rd quartile. i.e., in between 25th quantile and 75th quantile range. This range is also called an Interquartile ra...
#training the ElasticNet Input=[("scaler",RobustScaler()),("model",ElasticNet(random_state = 5))] model = Pipeline(Input) model.fit(X_train,y_train)
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Model Accuracyscore() method return the mean accuracy on the given test data and labels.In multi-label classification, this is the subset accuracy which is a harsh metric since you require for each sample that each label set be correctly predicted.
print("Accuracy score {:.2f} %\n".format(model.score(X_test,y_test)*100)) #prediction on testing set prediction=model.predict(X_test)
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Model evolution**r2_score:** The r2_score function computes the percentage variablility explained by our model, either the fraction or the count of correct predictions.**MAE:** The mean abosolute error function calculates the amount of total error(absolute average distance between the real data and the predicted data)...
print('Mean Absolute Error:', mean_absolute_error(y_test, prediction)) print('Mean Squared Error:', mean_squared_error(y_test, prediction)) print('Root Mean Squared Error:', np.sqrt(mean_squared_error(y_test, prediction))) print("R-squared score : ",r2_score(y_test,prediction)) #ploting actual and predicted red =...
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Prediction Plot¶First, we make use of a plot to plot the actual observations, with x_train on the x-axis and y_train on the y-axis. For the regression line, we will use x_train on the x-axis and then the predictions of the x_train observations on the y-axis.
plt.figure(figsize=(10,6)) plt.plot(range(20),y_test[0:20], color = "green") plt.plot(range(20),model.predict(X_test[0:20]), color = "red") plt.legend(["Actual","prediction"]) plt.title("Predicted vs True Value") plt.xlabel("Record number") plt.ylabel(target) plt.show()
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Apache-2.0
Regression/Linear Models/ElasticNet_RobustScaler.ipynb
surya2365/ds-seed
Let's Import Our Libraries
# Keras from keras.preprocessing.text import Tokenizer from keras.preprocessing.sequence import pad_sequences from keras.models import Sequential from keras.layers import Dense, Flatten, LSTM, Conv1D, MaxPooling1D, Dropout, Activation from keras.layers.embeddings import Embedding # Plot import plotly.offline as py imp...
Using TensorFlow backend.
MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Let's start by exploring the data.
df = pd.read_csv("socialmedia-disaster-tweets-DFE.csv", encoding='latin-1') df.shape df.head(5) df.columns
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
The 'tweet' column has tweets and 'choose_one' has the classification. Let's determine the number of unique classifications.
df.choose_one.unique()
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Let's work on cleaning up the data
df = df[["text", "choose_one"]] df["choose_one"] = df.choose_one.replace({"Relevant": 1, "Not Relevant": 0}) df.rename(columns={"choose_one":"label"}, inplace=True) df.label=pd.to_numeric(df.label, errors='coerce') df.dropna(inplace=True)
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Let's check and see how the data looks.
df.label.unique() df.head(5) df["text"] = df["text"].str.replace(r"http\S+|http|@\S+|at", "") df["text"] = df["text"].str.replace(r"[^A-Za-z0-9(),!?@\'\`\"\_\n]", " ") df["text"] = df["text"].str.lower() df.head(5) df.columns
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Let's Tokenzie: We'll Turn our Sentences into Lists of Words
from nltk.tokenize import RegexpTokenizer tokenizer = RegexpTokenizer(r'\w+') df["tokens"] = df["text"].apply(tokenizer.tokenize)
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Tokens will give us more insight into the data
all_words = [word for tokens in df["tokens"] for word in tokens] sentence_lengths = [len(tokens) for tokens in df["tokens"]] vocabulary = sorted(set(all_words)) print("%s words total, with a vocabulary size of %s." % (len(all_words), len(vocabulary))) print("Max sentence length is %s." % max(sentence_lengths))
Max sentence length is 34.
MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Let's Embed: Turning Words into Numbers
from sklearn.feature_extraction.text import TfidfVectorizer from sklearn.model_selection import train_test_split
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
TFIDF Tokenizer for Our Classical ML Models
text = df["text"].tolist() labels = df["label"].tolist() X_train, X_test, y_train, y_test = train_test_split(text, labels, test_size=0.2,random_state=40) tfidf_vectorizer = TfidfVectorizer() X_train_tfidf = tfidf_vectorizer.fit_transform(X_train) X_test_tfidf = tfidf_vectorizer.transform(X_test) X_test_tfidf.shape
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
NN Specific Tokenizer
vocabulary_size = 40000 tokenizer = Tokenizer(num_words = vocabulary_size) tokenizer.fit_on_texts(df['text']) sequences = tokenizer.texts_to_sequences(X_train) X_train_nn = pad_sequences(sequences, maxlen=28) sequences = tokenizer.texts_to_sequences(X_test) X_test_nn = pad_sequences(sequences, maxlen=28) X_train_nn ...
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Here We'll Define a New Classifier
class NbSvmClassifier(BaseEstimator, ClassifierMixin): def __init__(self, C=1.0, dual=False, n_jobs=1): self.C = C self.dual = dual self.n_jobs = n_jobs def predict(self, x): # Verify that model has been fit check_is_fitted(self, ['_r', '_clf']) return self._clf....
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Let's get a baseline using Logisitc Regression
classifier = LogisticRegression(C=30.0, class_weight='balanced', solver='newton-cg', multi_class='multinomial', n_jobs=-1, random_state=40) classifier.fit(X_train_tfidf, y_train) y_predicted_tfidf = classifier.predict(X_test_tfidf) precision = precision_score(y_test, y_predicted_tfidf, pos_label=None,average='weighted...
0.7745952843343159
MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Now We'll Utilize Our NBSVM Classifier
classifier = NbSvmClassifier(C=4, dual=True, n_jobs=-1).fit(X_train_tfidf, y_train) classifier.fit(X_train_tfidf, y_train) y_predicted_tfidf = classifier.predict(X_test_tfidf) precision = precision_score(y_test, y_predicted_tfidf, pos_label=None,average='weighted') print(precision)
0.8057456468641322
MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Now Let's Apply Grid Search to the Model
from sklearn.model_selection import GridSearchCV param_grid = { 'C': [3.0, 3.2, 3.25, 3.3, 3.4, 3.5], 'dual' : [True, False] } %%time gs_classifier = GridSearchCV(NbSvmClassifier(), param_grid, n_jobs=-1) gs_classifier = gs_classifier.fit(X_train_tfidf, y_train) gs_classifier.best_score_ gs_classifier.best_para...
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MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
We don't seem to be getting much extra juice from applying grid search to this model. Let's Try Regular SVM
classifier = SGDClassifier().fit(X_train_tfidf, y_train) classifier.fit(X_train_tfidf, y_train) y_predicted_tfidf = classifier.predict(X_test_tfidf) precision = precision_score(y_test, y_predicted_tfidf, pos_label=None,average='weighted') print(precision)
0.7946891903618641
MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Let's Try Multinomial Naive Bayes
classifier = SGDClassifier().fit(X_train_tfidf, y_train) classifier.fit(X_train_tfidf, y_train) y_predicted_tfidf = classifier.predict(X_test_tfidf) precision = precision_score(y_test, y_predicted_tfidf, pos_label=None,average='weighted') print(precision)
0.7960386107807245
MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
The last three approaches yielded pretty similar results. Let's try a deep learning model. Build the network with LSTM Network ArchitectureOur network is going to start with an embedding layer. This layer lets the system expand each token into a much larger vector space. By doing so we can represent each word in a mo...
def create_lstm(): model = Sequential() model.add(Embedding(40000, 100, input_length=28)) model.add(LSTM(100, dropout=0.9, recurrent_dropout=0.5)) model.add(Dense(1, activation='sigmoid')) model.compile(loss='binary_crossentropy', optimizer='adam', metrics=['accuracy']) return model classifier =...
0.8128093975364307
MIT
disaster_tweets.ipynb
Hack-My-Life/disaster_tweets
Convolutional Neural Networks---In this notebook, we train a **CNN** to classify images from the CIFAR-10 database.The images in this database are small color images that fall into one of ten classes; some example images are pictured below. Test for [CUDA](http://pytorch.org/docs/stable/cuda.html)Since these are lar...
import torch import numpy as np # check if CUDA is available train_on_gpu = torch.cuda.is_available() if not train_on_gpu: print('CUDA is not available. Training on CPU ...') else: print('CUDA is available! Training on GPU ...')
CUDA is available! Training on GPU ...
MIT
convolutional-neural-networks/cifar-cnn/cifar10_cnn_exercise.ipynb
sroy8091/deep-learning-v2-pytorch
--- Load the [Data](http://pytorch.org/docs/stable/torchvision/datasets.html)Downloading may take a minute. We load in the training and test data, split the training data into a training and validation set, then create DataLoaders for each of these sets of data.
from torchvision import datasets import torchvision.transforms as transforms from torch.utils.data.sampler import SubsetRandomSampler # number of subprocesses to use for data loading num_workers = 0 # how many samples per batch to load batch_size = 20 # percentage of training set to use as validation valid_size = 0.2 ...
Files already downloaded and verified Files already downloaded and verified
MIT
convolutional-neural-networks/cifar-cnn/cifar10_cnn_exercise.ipynb
sroy8091/deep-learning-v2-pytorch
Visualize a Batch of Training Data
import matplotlib.pyplot as plt %matplotlib inline # helper function to un-normalize and display an image def imshow(img): img = img / 2 + 0.5 # unnormalize plt.imshow(np.transpose(img, (1, 2, 0))) # convert from Tensor image # obtain one batch of training images dataiter = iter(train_loader) images, labels ...
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MIT
convolutional-neural-networks/cifar-cnn/cifar10_cnn_exercise.ipynb
sroy8091/deep-learning-v2-pytorch