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ArraysThere are several kinds of sequences in Python. A [list](lists) is one. However, the sequence type that we will use most in the class, is the array.The `numpy` package, abbreviated `np` in programs, provides Python programmerswith convenient and powerful functions for creating and manipulating arrays.
# Load the numpy package, and call it "np". import numpy as np
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
Creating arrays The `array` function from the Numpy package creates an array from single values, or sequences of values.For example, remember `my_list`?
my_list = [1, 2, 3]
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
This is a `list`:
type(my_list)
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
The `array` function from Numpy can make an array from this list:
my_array = np.array(my_list) my_array
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
As you can see from the display above, this is an array. We confirm it with `type`:
type(my_array)
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
We can also create the list and then the array in one call, like this:
my_array = np.array([1, 2, 3]) my_array
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
Here `[1, 2, 3]` is an *expression* that returns a list. `np.array` then operates on the returned list, to create an array.Arrays often contain numbers, but, like lists, they can also contain stringsor other types of values. However, a single array can only contain a singlekind of data. (It usually doesn't make sense ...
english_parts_of_speech = np.array(["noun", "pronoun", "verb", "adverb", "adjective", "conjunction", "preposition", "interjection"]) english_parts_of_speech
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
We have not seen this yet, but Python allows us to spread expressions betweenround and square brackets across many lines. It knows that the expression hasnot finished yet because it is waiting for the closing bracket. For example, this cell works in the exactly the same way as the cell above, and may be easier to rea...
# An expression between brackets spread across many lines. english_parts_of_speech = np.array( ["noun", "pronoun", "verb", "adverb", "adjective", "conjunction", "preposition", "interjection"] ) english_parts_of_speech
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
Below, we collect four different temperatures into a list called `temps`.These are the [estimated average daily hightemperatures](http://berkeleyearth.lbl.gov/regions/global-land) over all landon Earth (in degrees Celsius) for the decades surrounding 1850, 1900, 1950,and 2000, respectively, expressed as deviations from...
baseline_high = 14.48 highs = np.array([baseline_high - 0.880, baseline_high - 0.093, baseline_high + 0.105, baseline_high + 0.684]) highs
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
Calculations with arrays Arrays can be used in arithmetic expressions to compute over their contents.When an array is combined with a single number, that number is combined witheach element of the array. Therefore, we can convert all of these temperaturesto Fahrenheit by writing the familiar conversion formula.
(9/5) * highs + 32
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
As we saw for strings, arrays have *methods*, which are functions thatoperate on the array values. The `mean` of a collection of numbers is itsaverage value: the sum divided by the length. Each pair of parentheses in theexamples below is part of a call expression; it's calling a function with noarguments to perform a ...
# The number of elements in the array highs.size highs.sum() highs.mean()
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
Functions on Arrays Numpy provides various useful functions for operating on arrays.For example, the `diff` function computes the difference between each adjacentpair of elements in an array. The first element of the `diff` is the secondelement minus the first.
np.diff(highs)
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CC-BY-4.0
ipynb/03/Arrays.ipynb
matthew-brett/cfd-uob
cat1 - cat116 are categorical
categorical_vars = ['cat{}'.format(i+1) for i in range(116)] for var in categorical_vars: train = pd.get_dummies(train, columns=[var]) train.head() def multi_model_prediction(test_df, models): preds = list() for model in models: preds.append(model.predict(test_df)) return [np.mean(p) for p in np...
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MIT
allstate/10-21-2016 Tate .ipynb
nkwan12/kaggle-competitions
Stack Analysis
# The Implementation # # Additional Questions to Address # **Difference Between Class and Struct:** **Public and Private:** **size_t:** **Where'd all the Pointers go?:**
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MIT
Stack.ipynb
chapman-cs510-2017f/cw-12-evan_logan_tim
**new and delete:** new is a keyword for creating a new instance of an object, delete is the keyword to free up the data allocated for a given instance of an object. The equivalent in C is free(obj) instead of delete and calloc() in C would be a similar memory allocation method for the keyword new.
**Memory Leaks:** **unique_ptr:** This mimics the action of a "garbage collector", ie it will delete any unused memory blocks. **List Initializer:** **Rule of Zero:**
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MIT
Stack.ipynb
chapman-cs510-2017f/cw-12-evan_logan_tim
Checkpoint 2
# imports. from datetime import datetime import matplotlib.pyplot as plt %matplotlib inline import numpy as np from scipy import integrate from mpl_toolkits.mplot3d import Axes3D from matplotlib import cm import random plt.rcParams['figure.figsize'] = (10, 6) plt.rcParams['font.size'] = 16 # Constants G = 6.67408...
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MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Initial ConditionsBelow are the initial positions and velocities for Earth and Mars.
# positions and velocities at t=0 (2019/6/2) rs = [[-4.8957151e10, -1.4359284e11, 501896.65], # Earth [-1.1742901e11, 2.1375285e11, 7.3558899e9]] # Mars (units of m) vs = [[27712., -9730., -0.64148], # Earth [-20333., -9601., 300.34]] # Mars (units of m/s)
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MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Historical PositionsBelow are historical positions for Earth and Mars at t=-1000 days prior to 2019/6/2. These will be used in tasks 5 and 6.
# positions of the planets at (2019/6/2)-1000 days rspast = [[1.44109e11, -4.45267e10, -509142.], # Earth [1.11393e11, -1.77611e11, -6.45385e9]] # Mars
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MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Earth/Mars functionsBelow are functions for the equations of motion (the vector of 1st derivtives) for Earth and Mars and for calculating the angle between Earth and Mars.
def earth_mars_motion(t, y): """ # order of variables # 0,1,2 rx,ry,rz for Earth # 3,4,5 rx,ry,rz for Mars # 6,7,8 vx,vy,vz for Earth # 9,10,11 vx,vy,vz for Mars # order of derivatives: # 0,1,2 Drx,Dry,Drz for Earth # 3,4,5 Drx,Dry,Drz for Mars # 6,7,8 Dvx,Dvy,Dvz for Earth ...
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MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Task 1Write a code that solves the equations and plots trajectories of Mars and Earth up to some $t_{max}$. The 3D plot should include at least one full orbit for each body.
# setting time domain. tmax = 8000*day2sec # 8000 days. dt = 3600 # 1 hour. ts = np.arange(0, tmax, dt) trange = (ts[0], ts[-1]) def get_traj(initial_rs, initial_vs): ini = np.append(initial_rs, initial_vs) # initial coordinates of Earth and Mars sol = integrate.solve_ivp(earth_mars_motion, trange, ini, me...
/Users/callum/.conda/envs/coding/lib/python3.7/site-packages/IPython/core/pylabtools.py:128: UserWarning: Creating legend with loc="best" can be slow with large amounts of data. fig.canvas.print_figure(bytes_io, **kw)
MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Task 2Find the time of the next opposition to $\pm10$ days. Return the time in days from $t_0$ = 2 June 2019.
def get_opp_times(solutions, times): thetas = angle_between_planets(solutions) # finding relationship between neighbouring points. thetas_diff = np.diff(thetas) # determining locations of minima. indices = np.where(np.sign(thetas_diff[:-1]) < np.sign(thetas_diff[1:]))[0] + 1 # recording times th...
Next opposition in [ 500.25 1285.75 2056. 2820.875 3585.875 4356.29166667 5142.08333333 5952.45833333 6748.08333333 7522.58333333] days.
MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Task 3Find the times for 10 oppositions in days since 2 June 2019. The results must be accurate to 1 day. Convert this to dates (year/month/day) and print out on the screen. Do not worry if the dates come out different than the actual dates you can find online, it’s supposed to be like that.The `calculate_oppositions`...
def get_opp_times(solutions, times): thetas = angle_between_planets(solutions) # finding relationship between neighbouring points thetas_diff = np.diff(thetas) # determining locations of minima indices = np.where(np.sign(thetas_diff[:-1]) < np.sign(thetas_diff[1:]))[0] + 1 # recording times thes...
t = 500.25 day: 2020-10-14 06:00:00 t = 1285.75 day: 2022-12-08 17:00:00 t = 2056.00 day: 2025-01-16 23:00:00 t = 2820.88 day: 2027-02-20 20:00:00 t = 3585.88 day: 2029-03-26 21:00:00 t = 4356.29 day: 2031-05-06 07:00:00 t = 5142.08 day: 2033-06-30 02:00:00 t = 5952.46 day: 2035-09-18 11:00:00 t = 6748.08 day: 2037-11-...
MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Task 4Estimate standard errors of these times assuming that all initial positions and velocities (12 numbers) are normally distributed random numbers with means as specified in the list of parameters, and coefficients of variation (standard deviation divided by the mean) equal to 3x10$^{-5}$.The `estimate_errors` func...
# gaussian sampling function. def get_sample(arr): arr = np.array(arr) sample = np.random.normal(loc = arr, scale = abs(3e-5*arr)) return sample def estimate_errors(): # number of Monte Carlo simulations. N = 50 sample_space = np.arange(0, tmax, tmax / N) # initialise array to store the oppo...
0: 500.28 +- 0.15 days. 1: 1285.82 +- 0.31 days. 2: 2056.07 +- 0.44 days. 3: 2820.99 +- 0.58 days. 4: 3586.00 +- 0.76 days. 5: 4356.49 +- 1.04 days. 6: 5142.35 +- 1.60 days. 7: 5952.83 +- 2.08 days. 8: 6748.41 +- 1.76 days. 9: 7522.88 +- 1.65 days.
MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Task 5Use historical positions of Earth and Mars (boundary value problem) to improve the accuracy of your prediction. What are the standard errors now?The `estimate_errors_improved` function should return two lists:1. a list (or array) of the mean opposition times for 10 oppositions2. a list (or array) of the standard...
def bc(ya, yb): """ :param ya: array of positions and velocities of Earth and Mars at t = -1000 days :param yb: array of positions and velocities of Earth and Mars at t = 0 days """ # converting lists to arrays to have correct dimensions for solve_bvp. ra = np.array(rspast) ra = ra.reshape(6...
0: 500.14 +- 0.09 days. 1: 1285.20 +- 0.18 days. 2: 2055.03 +- 0.25 days. 3: 2819.57 +- 0.33 days. 4: 3584.19 +- 0.44 days. 5: 4354.27 +- 0.60 days. 6: 5139.64 +- 0.91 days. 7: 5949.73 +- 1.20 days. 8: 6745.08 +- 1.00 days. 9: 7519.23 +- 0.94 days.
MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Task 6Using the methods from Task 5, is there a better time point in the last 1000 days to get historical data for increasing the accuracy? Find such time t in the past 1000 days (-1000<$t$<0 days, where $t$=0 corresponds to 2 June 2019) which would yield a maximum error (std. deviation) of less than 0.2 days for eac...
# Remove the line that says "raise NotImplementedError" # YOUR CODE HERE raise NotImplementedError()
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MIT
c2/pde_solver.ipynb
c-abbott/num-rep
Week 05, Part 1 Topic 1. For reference: about plotting polygons in R (we won't go over this, but it serves as reference) 1. Plotting normal distributions 1. Example: Manufacturing rulers 1. BACK TO SLIDES FOR PERCENTILES
# resize require(repr) options(repr.plot.width=8, repr.plot.height=8)
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
1. Intro to polygons in R Now we'll go over some useful functions associated with drawing normal distributions. First, a little intro of sequences and polygons:
x = seq(-3,3, length=10) print(x)
[1] -3.0000000 -2.3333333 -1.6666667 -1.0000000 -0.3333333 0.3333333 [7] 1.0000000 1.6666667 2.3333333 3.0000000
BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Now, lets try to understand a `polygon` function. We'll use this to help us draw areas using the `plot_polygons.R` script, but let's look at a few `polygon` examples.Let's make a triangle -- say the triangle goes from -3 to +3 in x & 0-1 in y:
plot(NULL,xlim=c(-3,3),ylim=c(0,1)) # sets up axes xvertices = c(-3, 0, 3) yvertices = c(0, 1, 0) polygon(xvertices, yvertices,col="red") # plots on top of previous plot
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Let's try overplotting a little rectangle at x = (-1,1), y = (0.4,0.6):
# set up empty axis plot(NULL,xlim=c(-3,3),ylim=c(0,1)) # sets up axes # red triangle xvertices = c(-3, 0, 3) yvertices = c(0, 1, 0) polygon(xvertices, yvertices,col="red") # plots on top of previous plot # blue rectangle xvertices = c(-1, -1, 1, 1) yvertices = c(0.4, 0.6, 0.6, 0.4) polygon(xvertices, yvertices, col=...
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Essentially, polygon just fills in between a list of verticies we give it. We can use this to plot underneath our normal distributions. This will help us get a "feel" for how much of the graph is related to our measurement of interest. 2. Plotting normal distributions Now, let's build some tool's we will need to exa...
help(dnorm) x=seq(-3,3,length=200) y=dnorm(x, mean=0, sd=1) plot(x,y)
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Let's make a little fancier of a plot:
x = seq(-3,3,length=200) # plotting normal dist. -3,3 SD y1 = dnorm(x, mean=0, sd=1) plot(x,y1, type='l', ylim=c(0,2), ylab='Normal Distributions')
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Overplot a few other normal distributions:
# orig plot x = seq(-3,3,length=200) # plotting normal dist. -3,3 SD y1 = dnorm(x, mean=0, sd=1) plot(x,y1, type='l', ylim=c(0,2), ylab='Normal Distributions') # other distribution y2 = dnorm(x, mean=0, sd=0.5) par(new=TRUE) # for overplotting plot(x, y2, type='l', col='red', ylim=c(0,2), ylab="")
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Let's add to this by visualizing a Z-score and actually calculating it as well. We'll go back to just one normal distribution.Z-scores: remember this is a measure of how "far off" a score is from the mean.So first, as is always a good example, let's plot!
x = seq(-6,6,length=200) mean_dist = 1.0 sd_dist = 0.5
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Note here: I'm calling the dnorm function directly in the "y" data position of this function this is instead of doing "y = dnorm..."Its just us being fancy :)
plot(x,dnorm(x,mean=mean_dist,sd=sd_dist),ylim=c(0,1.0), type='l')
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Let's say I want the Zscore for x=2.5 - i.e. given this normal distribution, if I measure pick out an observation that is at the value of 2.5, how off from the mean is it? First of course, lets plot!
plot(x,dnorm(x,mean=mean_dist,sd=sd_dist),ylim=c(0,1.0), type='l') abline(v=2.5,col="red")
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
We can see already that its pretty far off from the mean here $\rightarrow$ if we by eye try to compare the area to the right of this line (the little tail) it is very small compared to the area to the left - so we expect our Z-score to be pretty big!Now let's actually calculate. Recall: $Z_{score} = \frac{observation...
Zscore = (2.5 - mean_dist)/sd_dist print(Zscore)
[1] 3
BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
This is saying our measurement of 2.5 is 3 times bigger than the standard deviation of our normal distribution. So pretty gosh-darn big! Now, let's say I've got a 2nd distribution with mean = 0.5 and sd=2, is the $Z_{score}$ at x=2.5 higher or lower than the first one?As always, let's start by plotting:
# old plot plot(x,dnorm(x,mean=mean_dist,sd=sd_dist),ylim=c(0,1.0), type='l') abline(v=2.5,col="red") # 2nd distribution mean_dist2 = 0.5 sd_dist2 = 2.0 par(new=TRUE) # overplot on our original axis plot(x,dnorm(x,mean=mean_dist2,sd=sd_dist2),col="blue",ylim=c(0,1.0), type='l')
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
By eye we can see that the red line falls at a higher y-value on the blue, 2nd distribution this tells us at x=2.5, we are closer to the mean on the 2nd distribution so we expect a lower $Z_{score}$, but let's find out!
Zscore2 = (2.5-mean_dist2)/sd_dist2 print(Zscore2)
[1] 1
BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Indeed 1 < 3 - in our 2nd distribution, an observation of x=2.5 is only 1 SD from the mean. $Z_{scores}$ allow us to in a sense "normalize" each normal distribution to allow for comparisions between normal distributiosn with different means & SDs. For example, if these distributions were measuring a test then a studen...
options(repr.plot.width=8, repr.plot.height=5) # nicer plotting window #Plot: Run # 1: "mean of 11cm and an SD of 2.0cm" x = seq(5,15,length=200) plot(x,dnorm(x,mean=11,sd=2), type='l', ylim=c(0,0.2)) # further out for run #1 par(new=TRUE) # to overplot #Plot: Run # 2: "mean of 10 cm and an SD of 4.0 cm" plot(x,dnorm...
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BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
By eye, it looks like in run 1 (black) we are further from the mean (11cm), than for run 2 (blue). So this means that it is more unusual to get this 9cm ruler in run 1 than run2But let's do the calculation to be sure:
Z1 = (9.0-11)/2.0 # -1.0 Z2 = (9.0-10)/4.0 # -0.25 print(c("Run 1", "Run 2")) print(c(Z1,Z2))
[1] "Run 1" "Run 2" [1] -1.00 -0.25
BSD-3-Clause
week05/.ipynb_checkpoints/prep_notes_part1_week05_s2020_normalZscores-checkpoint.ipynb
jnaiman/is507_spring2021
Machine Learning with Linear Regression
import pandas as pd import numpy as np import seaborn as sns import matplotlib.pyplot as plt %matplotlib inline
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MIT
ML Micro Projects/Machine Learning with Linear Regression.ipynb
anaxsouza/Data_Science_and_ML_Portfolio
Data
customers = pd.read_csv('data/Ecommerce Customers') customers.head() customers.describe() customers.info()
<class 'pandas.core.frame.DataFrame'> RangeIndex: 500 entries, 0 to 499 Data columns (total 8 columns): Email 500 non-null object Address 500 non-null object Avatar 500 non-null object Avg. Session Length 500 non-null float64 Time on App 500 non-null fl...
MIT
ML Micro Projects/Machine Learning with Linear Regression.ipynb
anaxsouza/Data_Science_and_ML_Portfolio
Exploratory Analysis
sns.jointplot(customers['Time on Website'],customers['Yearly Amount Spent']) sns.jointplot(customers['Time on App'],customers['Yearly Amount Spent']) sns.pairplot(customers) customers.corr() sns.lmplot('Length of Membership','Yearly Amount Spent',data=customers)
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MIT
ML Micro Projects/Machine Learning with Linear Regression.ipynb
anaxsouza/Data_Science_and_ML_Portfolio
Splitting the Data
customers.columns #Selecting only the numerical features for training the model. X = customers[['Avg. Session Length', 'Time on App','Time on Website', 'Length of Membership']] y = customers['Yearly Amount Spent'] from sklearn.model_selection import train_test_split X_test,X_train,y_test,y_train = train_test_split(X,y,...
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MIT
ML Micro Projects/Machine Learning with Linear Regression.ipynb
anaxsouza/Data_Science_and_ML_Portfolio
Training the Model
from sklearn.linear_model import LinearRegression lm = LinearRegression() lm.fit(X_train,y_train)
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MIT
ML Micro Projects/Machine Learning with Linear Regression.ipynb
anaxsouza/Data_Science_and_ML_Portfolio
Making Predictions
predictions = lm.predict(X_test) plt.scatter(y_test,predictions)
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MIT
ML Micro Projects/Machine Learning with Linear Regression.ipynb
anaxsouza/Data_Science_and_ML_Portfolio
Evaluation and Understanding Results
from sklearn import metrics print('MAE:',metrics.mean_absolute_error(y_test,predictions)) print('MSE:',metrics.mean_squared_error(y_test,predictions)) print('RMSE:',np.sqrt(metrics.mean_squared_error(y_test,predictions))) cust_coeff = pd.DataFrame(lm.coef_,X.columns) cust_coeff.columns = ['Coefficient'] cust_coeff
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MIT
ML Micro Projects/Machine Learning with Linear Regression.ipynb
anaxsouza/Data_Science_and_ML_Portfolio
Introduction on Using Python to access GeoNet's GNSS data In this notebook we will learn how to get data from one GNSS(Global Navigation Satellite System) station. By the end of this tutorial you will have make a graph like the one below. &nbsp;Table of contents 1. Introduction 2. Building the base FITS query 3. Get...
import requests import pandas as pd import datetime import matplotlib.pyplot as plt pd.plotting.register_matplotlib_converters()
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Set URL and endpoint
base_url = "http://fits.geonet.org.nz/" endpoint = "observation"
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
The base URL should be set as above to access the FITS database webservice containing the GeoNet GNSS data. The endpoint is set to observation to get the data itself in csv format. There are other endpoints which will return different information such as plot and site. To learn more go to https://fits.geonet.org.nz/api...
url = base_url + endpoint
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Combine the base URL and the endpoint to give the information to request the data. &nbsp;3. Get GNSS data In this section we will learn how to get all the GNSS observation data from a site and put it into a pandas dataframe, so we can plot and save the data Set query parameters
parameters ={"typeID": "e", "siteID": "HANM"}
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Set the parameters to get the east component(`'typeID':'e'`) of the GNSS station in the Hanmer Basin (`'siteID': 'HANM'`). To find the 4 letter site ID of a station you can use https://www.geonet.org.nz/data/network/sensor/search to find stations in an area of interest Get GNSS data
response_e = requests.get(url, params=parameters)
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
We use `requests.get` to get the data using the URL we made earlier and the parameters we set in the last stage
parameters["typeID"] = "n" response_n = requests.get(url, params=parameters) parameters["typeID"] = "u" response_u = requests.get(url, params=parameters)
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Here we've changed the typeID in the parameters dictionary to get the other components for the GNSS station Check that your requests worked
print ("The Response status code of the east channel is", response_e.status_code) print ("The Response status code of the north channel is",response_n.status_code) print ("The Response status code of the up channel is",response_u.status_code)
The Response status code of the east channel is 200 The Response status code of the north channel is 200 The Response status code of the up channel is 200
Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
The response status code says whether we were successful in getting the data requested and why not if we were unsuccessful:200 -- everything went okay, and the result has been returned (if any)301 -- the server is redirecting you to a different endpoint. This can happen when a company switches domain names, or an endpo...
data_e = response_e.content.decode("utf-8").split("\n")
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
The above code decodes the response and then splits the east displacement data on the new line symbol as each line is one point of data. If you are using Python2 remove the code `.decode("utf-8")` Split the points of data
for i in range(0, len(data_e)): data_e[i]= data_e[i].split(",")
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
The above code uses a for loop to split each point of data on the "," symbol as each value is separated by a ",", producing a list of lists Reformat data values
for i in range(1, (len(data_e)-1)): data_e[i][0] = datetime.datetime.strptime(data_e[i][0], '%Y-%m-%dT%H:%M:%S.%fZ') #make 1st value into a datetime object data_e[i][1] = float(data_e[i][1]) #makes 2nd value into a decimal number data_e[i][2] = float(data_e[i][2]) #makes 3rd value into a decimal number
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
The above code uses a `for` loop to go over each point of data and reformat it, so that the first value in each point is seen as a time, and the second and third values are seen as numbers.Note that we choose to miss the first and last data points in our loop as the first data point has the names of the data values and...
df_e = pd.DataFrame(data_e[1:-1],index = range(1, (len(data_e)-1)), columns=data_e[0])
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
`data_e[1:-1]` makes the list of data be the data in the data frame, `index = range(1, (len(data_e)-1))` makes rows named 1, 2, ... n where n is the number of data points, and `columns=data_e[0]` gives the columns the names that where in the first line of the response string Print the first few lines of the data fram...
df_e.head()
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Here we can see on the 4th of June 2014 how much the site HANM had moved east (with formal error) in mm from its reference position, this being the midpoint of the position timeseries. Make everything we have just done into a function
def GNSS_dataframe(data): """ This function turns the string of GNSS data received by requests.get into a data frame with GNSS data correctly formatted. """ data = data.split("\n") # splits data on the new line symbol for i in range(0, len(data)): data[i]= data[i].split(",")# splits data...
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
This makes code cells 8 to 11 into a function to be called later in the notebook. Run the above function on the North and Up data
df_n = GNSS_dataframe(response_n.content.decode("utf-8")) df_u = GNSS_dataframe(response_u.content.decode("utf-8"))
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Make sure to run this function on the content string of the requested data. If in Python2 use remove the code `.decode("utf-8")` Why make the data into a data frame? A data frame is a way of formatting data into a table with column and row name much like a csv file and makes long list of data a lot easier to use. Dat...
e_plot = df_e.plot(x='date-time', y= ' e (mm)', marker='o', title = 'Relative east displacement for HANM') #plt.savefig("e_plot")
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
The above code plots time on the x axis and the displacement in millimetres on the y axis. `marker = ‘o’` makes each point of data a small circle. If you want to save the plot as a png file in the folder you are running this code from you can uncomment ` plt.savefig("e_plot")` Plot the north data
n_plot = df_n.plot(x='date-time', y= ' n (mm)', marker='o', title = 'Relative north displacement for HANM') #plt.savefig("n_plot")
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Plot the up data
u_plot = df_u.plot(x='date-time', y= ' u (mm)', marker='o', title='Relative up displacement for HANM') #plt.savefig("u_plot")
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
&nbsp;5. Save data Make a copy of the east data frame
df = df_e
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
This makes what is call a deep copy of the data frame with the east displacement data in it. This means that if `df` is edited `df_e` is not effected. Remove the error column from this copy of the data
df = df.drop(" error (mm)",axis=1)
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
The above code removes the column called error (mm) and all its data from `df`. ` axis=1` says that we are looking for a column. If we put ` axis=0` we would be looking for a row. Add the up and north data to this data frame (but not the respective errors)
df["u (mm)"] = df_u[' u (mm)'] df["n (mm)"] = df_n[' n (mm)']
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Print the first few lines of the data frame
df.head()
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Here we can see the layout of the data frame with the columns date, east displacement, up displacement and north displacement Save as CSV file
df.to_csv("HANM.csv")
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Apache-2.0
GNSS_Data/Python/Introduction_to_GNSS_data_using_FITS_in_Python.ipynb
megankortink/data-tutorials
Preprocessing the input data
# concat last name and first name sdf['name_last_name_first'] = sdf['name_last'] + ' ' + sdf['name_first'] # build n-gram list vect = CountVectorizer(analyzer='char', max_df=0.3, min_df=3, ngram_range=(NGRAMS, NGRAMS), lowercase=False) a = vect.fit_transform(sdf.name_last_name_first) vocab = vect.vocabulary_ # sort ...
num_words = 1260 Max feature len = 41, Avg. feature len = 12
MIT
ethnicolr/models/ethnicolr_keras_lstm_fl_voter_name.ipynb
djakaitis/ethnicolr
Train a LSTM modelref: http://machinelearningmastery.com/sequence-classification-lstm-recurrent-neural-networks-python-keras/
'''The dataset is actually too small for LSTM to be of any advantage compared to simpler, much faster methods such as TF-IDF + LogReg. Notes: - RNNs are tricky. Choice of batch size is important, choice of loss and optimizer is critical, etc. Some configurations won't converge. - LSTM loss decrease patterns during tr...
Test score: 0.45394647121429443 Test accuracy: 0.8408349752426147
MIT
ethnicolr/models/ethnicolr_keras_lstm_fl_voter_name.ipynb
djakaitis/ethnicolr
Confusion Matrix
p = model.predict(X_test, verbose=2) # to predict probability y_pred = np.argmax(p, axis=-1) target_names = list(sdf.race.astype('category').cat.categories) print(classification_report(np.argmax(y_test, axis=1), y_pred, target_names=target_names)) print(confusion_matrix(np.argmax(y_test, axis=1), y_pred))
6250/6250 - 32s precision recall f1-score support asian 0.81 0.42 0.55 3876 hispanic 0.82 0.86 0.84 33455 nh_black 0.76 0.43 0.55 28290 nh_white 0.86 0.93 0.89 134379 accuracy ...
MIT
ethnicolr/models/ethnicolr_keras_lstm_fl_voter_name.ipynb
djakaitis/ethnicolr
Save model
model.save('./fl_voter_reg/lstm/fl_all_name_lstm.h5') words_df = pd.DataFrame(words_list, columns=['vocab']) words_df.to_csv('./fl_voter_reg/lstm/fl_all_name_vocab.csv', index=False, encoding='utf-8')
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MIT
ethnicolr/models/ethnicolr_keras_lstm_fl_voter_name.ipynb
djakaitis/ethnicolr
Principal Componenet Analysis (PCA)The PCA algorithm is a dimensionality reduction algorithm which works really well for datasets which have correlated columns. It combines the features of X in linear combination such that the new components capture the most information of the data. The PCA model is implemented in the...
import numpy as np import pandas as pd from sklearn.decomposition import PCA as skPCA from cuml import PCA as cumlPCA import cudf import os
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Apache-2.0
cuml/pca_demo.ipynb
divyegala/notebooks
Helper Functions
# calculate the time required by a cell to run from timeit import default_timer class Timer(object): def __init__(self): self._timer = default_timer def __enter__(self): self.start() return self def __exit__(self, *args): self.stop() def start(self): """St...
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Apache-2.0
cuml/pca_demo.ipynb
divyegala/notebooks
Run tests
%%time # nrows = number of samples # ncols = number of features of each sample nrows = 2**15 nrows = int(nrows * 1.5) ncols = 400 X = load_data(nrows,ncols) print('data',X.shape) # set parameters for the PCA model n_components = 10 whiten = False random_state = 42 svd_solver="full" %%time # use the sklearn PCA on the...
compare pca: cuml vs sklearn transformed results equal
Apache-2.0
cuml/pca_demo.ipynb
divyegala/notebooks
Deploy and perform inference on Model Package from AWS Marketplace This notebook provides you instructions on how to deploy and perform inference on model packages from AWS Marketplace object detection model.This notebook is compatible only with those object detection model packages which this notebook is linked to. P...
model_package_arn='<Customer to specify Model package ARN corresponding to their AWS region>' import json from sagemaker import ModelPackage import sagemaker as sage from sagemaker import get_execution_role import matplotlib.patches as patches import numpy as np from matplotlib import pyplot as plt from PIL import Im...
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
In next step, you would be deploying the model for real-time inference. For information on how real-time inference with Amazon SageMaker works, see [Documentation](https://docs.aws.amazon.com/sagemaker/latest/dg/how-it-works-hosting.html). 2. Create an endpoint and perform real-time inference
model_name='object-detection-model' #The object detection model packages this notebook notebook is compatible with, support application/x-image as the #content-type. content_type='application/x-image'
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
Review and update the compatible instance type for the model package in the following cell.
real_time_inference_instance_type='ml.g4dn.xlarge' batch_transform_inference_instance_type='ml.p2.xlarge'
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
A. Create an endpoint
#create a deployable model from the model package. model = ModelPackage(role=role, model_package_arn=model_package_arn, sagemaker_session=sagemaker_session) #Deploy the model predictor = model.deploy(1, real_time_inference_instance_type, endpoint_name=model_name)
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
Once endpoint has been created, you would be able to perform real-time inference. B. Prepare input file for performing real-time inferenceIn this step, we will download class_id_to_label_mapping from S3 bucket. The mapping files has been downloaded from [TensorFlow](https://storage.googleapis.com/download.tensorflow.o...
s3_bucket = f"jumpstart-cache-prod-{region}" key_prefix = "inference-notebook-assets" def download_from_s3(key_filenames): for key_filename in key_filenames: s3.download_file(s3_bucket, f"{key_prefix}/{key_filename}", key_filename) img_jpg = "Naxos_Taverna.jpg" #Download image download_from_s3(key_filena...
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
C. Query endpoint that you have created with the opened images
#perform_inference method performs inference on the endpoint and prints predictions. def perform_inference(filename): response = runtime.invoke_endpoint(EndpointName='test-tensorflow-test', ContentType=content_type, Body=input_img) model_predictions = json.loads(response['Body'].read()) return model_predict...
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
D. Display model predictions as bounding boxes on the input image
colors = list(ImageColor.colormap.values()) image_pil = Image.open(img_jpg) image_np = np.array(image_pil) plt.figure(figsize=(20,20)) ax = plt.axes() ax.imshow(image_np) classes = [class_id_to_label[str(int(index))] for index in result["detection_classes"][0]] bboxes, confidences = result["detection_boxes"][0], resu...
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
D. Delete the endpoint Now that you have successfully performed a real-time inference, you do not need the endpoint any more. You can terminate the endpoint to avoid being charged.
model.sagemaker_session.delete_endpoint(model_name) model.sagemaker_session.delete_endpoint_config(model_name)
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
3. Perform batch inference In this section, you will perform batch inference using multiple input payloads together. If you are not familiar with batch transform, and want to learn more, see [How to run a batch transform job](https://docs.aws.amazon.com/sagemaker/latest/dg/how-it-works-batch.html)
#upload the batch-transform job input files to S3 transform_input_key_prefix = 'object-detection-model-transform-input' transform_input = sagemaker_session.upload_data(img_jpg, key_prefix=transform_input_key_prefix) print("Transform input uploaded to " + transform_input) #Run the batch-transform job transformer = mode...
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
4. Clean-up A. Delete the model
model.delete_model()
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MIT-0
using_open_source_model_packages/tensorflow_od_model/using_object_detection_model.ipynb
Leggerla/aws-marketplace-machine-learning
PDF da apresentação: https://drive.google.com/file/d/1k5xfHrWnjPJJc05kB3op_05PAZpZpAfO/view
def ma(lista): soma = 0 cont = 0 for i in lista: soma = soma + i cont = cont + 1 return soma/cont def mg(lista): prod = 1 cont = 0 for i in lista: prod = prod*i cont = cont + 1 return prod**(1/cont) def mediaAG(lista, tip = 0): if (tip == 0): r = ma(lista) el...
A média aritmética é: 8.00 A média geométrica é: 7.96
MIT
Módulo07Aula24.ipynb
julianovale/pythonparatodos
TimeseriesCe notebook présente quelques étapes simples pour une série temporelle. La plupart utilise le module [statsmodels.tsa](https://www.statsmodels.org/stable/tsa.htmlmodule-statsmodels.tsa).
from jyquickhelper import add_notebook_menu add_notebook_menu() %matplotlib inline
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
DonnéesLes données sont artificielles mais simulent ce que pourraient être le chiffre d'affaires d'un magasin de quartier, des samedi très forts, une semaine morne, un Noël chargé, un été plat.
from ensae_teaching_cs.data import generate_sells import pandas df = pandas.DataFrame(generate_sells()) df.head()
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Premiers graphiquesLa série a deux saisonnalités, hebdomadaire, mensuelle.
import matplotlib.pyplot as plt fig, ax = plt.subplots(1, 2, figsize=(14, 4)) df.iloc[-30:].set_index('date').plot(ax=ax[0]) df.set_index('date').plot(ax=ax[1]) ax[0].set_title("chiffre d'affaire sur le dernier mois") ax[1].set_title("chiffre d'affaire sur deux ans");
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Elle a une vague tendance, on peut calculer un tendance à l'ordre 1, 2, ...
from statsmodels.tsa.tsatools import detrend notrend = detrend(df.value, order=1) df["notrend"] = notrend df["trend"] = df['value'] - notrend ax = df.plot(x="date", y=["value", "trend"], figsize=(14,4)) ax.set_title('tendance');
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Autocorrélations...
from statsmodels.tsa.stattools import acf cor = acf(df.value) cor fig, ax = plt.subplots(1, 1, figsize=(14,2)) ax.plot(cor) ax.set_title("Autocorrélogramme");
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
La première saisonalité apparaît, 7, 14, 21... Les autocorrélations partielles confirment cela, plutôt 7 jours.
from statsmodels.tsa.stattools import pacf from statsmodels.graphics.tsaplots import plot_pacf plot_pacf(df.value, lags=50);
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Comme il n'y a rien le dimanche, il vaut mieux les enlever. Garder des zéros nous priverait de modèles multiplicatifs.
df["weekday"] = df.date.dt.weekday df.head() df_nosunday = df[df.weekday != 6] df_nosunday.head(n=10) fig, ax = plt.subplots(1, 1, figsize=(14,2)) cor = acf(df_nosunday.value) ax.plot(cor) ax.set_title("Autocorrélogramme"); plot_pacf(df_nosunday.value, lags=50);
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
On décompose la série en tendance + saisonnalité. Les étés et Noël apparaissent.
from statsmodels.tsa.seasonal import seasonal_decompose res = seasonal_decompose(df_nosunday.value, freq=7) res.plot(); plt.plot(res.seasonal[-30:]) plt.title("Saisonnalité"); cor = acf(res.trend[5:-5]); plt.plot(cor);
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
On cherche maintenant la saisonnalité de la série débarrassée de sa tendance herbdomadaire. On retrouve la saisonnalité mensuelle.
res_year = seasonal_decompose(res.trend[5:-5], freq=25) res_year.plot();
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Test de stationnaritéLe test [KPSS](https://en.wikipedia.org/wiki/KPSS_test) permet de tester la stationnarité d'une série.
from statsmodels.tsa.stattools import kpss kpss(res.trend[5:-5])
c:\python372_x64\lib\site-packages\statsmodels\tsa\stattools.py:1276: InterpolationWarning: p-value is smaller than the indicated p-value warn("p-value is smaller than the indicated p-value", InterpolationWarning)
MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Comme ce n'est pas toujours facile à interpréter, on simule une variable aléatoire gaussienne donc sans tendance.
from numpy.random import randn bruit = randn(1000) kpss(bruit)
c:\python372_x64\lib\site-packages\statsmodels\tsa\stattools.py:1278: InterpolationWarning: p-value is greater than the indicated p-value warn("p-value is greater than the indicated p-value", InterpolationWarning)
MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Et puis une série avec une tendance forte.
from numpy.random import randn from numpy import arange bruit = randn(1000) * 100 + arange(1000) / 10 kpss(bruit)
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs
Une valeur forte indique une tendance et la série en a clairement une. PrédictionLes modèles *AR*, *ARMA*, *ARIMA* se concentrent sur une série à une dimension. En machine learning, il y a la série et plein d'autres informations. On construit une matrice avec des séries décalées.
from statsmodels.tsa.tsatools import lagmat lag = 8 X = lagmat(df_nosunday["value"], lag) lagged = df_nosunday.copy() for c in range(1,lag+1): lagged["lag%d" % c] = X[:, c-1] lagged.tail()
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MIT
_doc/notebooks/td2a_ml/seasonal_timeseries.ipynb
Jerome-maker/ensae_teaching_cs