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ロジスティック回帰を適用した結果を表示します。
w0, w1, w2, err_rate, result = run_logistic(train_set) fig = plt.figure(figsize=(6, 12)) subplot = fig.add_subplot(2,1,1) show_result(subplot, train_set, w0, w1, w2, err_rate) subplot = fig.add_subplot(2,1,2) draw_roc(subplot, result)
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Apache-2.0
05-roc_curve.ipynb
RXV06021/test_ml4se_colab
*Python Machine Learning 2nd Edition* by [Sebastian Raschka](https://sebastianraschka.com), Packt Publishing Ltd. 2017Code Repository: https://github.com/rasbt/python-machine-learning-book-2nd-editionCode License: [MIT License](https://github.com/rasbt/python-machine-learning-book-2nd-edition/blob/master/LICENSE.txt) ...
%load_ext watermark %watermark -a "Sebastian Raschka" -u -d -v -p numpy,pandas,matplotlib,scipy,sklearn
Sebastian Raschka last updated: 2017-08-25 CPython 3.6.1 IPython 6.1.0 numpy 1.12.1 pandas 0.20.3 matplotlib 2.0.2 scipy 0.19.1 sklearn 0.19.0
MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
*The use of `watermark` is optional. You can install this IPython extension via "`pip install watermark`". For more information, please see: https://github.com/rasbt/watermark.* Overview - [Grouping objects by similarity using k-means](Grouping-objects-by-similarity-using-k-means) - [K-means clustering using scikit-...
from IPython.display import Image %matplotlib inline
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Grouping objects by similarity using k-means K-means clustering using scikit-learn
from sklearn.datasets import make_blobs X, y = make_blobs(n_samples=150, n_features=2, centers=3, cluster_std=0.5, shuffle=True, random_state=0) import matplotlib.pyplot as plt plt.scatter(X[:, 0], X[:, 1], c='...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
A smarter way of placing the initial cluster centroids using k-means++ ... Hard versus soft clustering ... Using the elbow method to find the optimal number of clusters
print('Distortion: %.2f' % km.inertia_) distortions = [] for i in range(1, 11): km = KMeans(n_clusters=i, init='k-means++', n_init=10, max_iter=300, random_state=0) km.fit(X) distortions.append(km.inertia_) plt.plot(range(1, 11), distortion...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Quantifying the quality of clustering via silhouette plots
import numpy as np from matplotlib import cm from sklearn.metrics import silhouette_samples km = KMeans(n_clusters=3, init='k-means++', n_init=10, max_iter=300, tol=1e-04, random_state=0) y_km = km.fit_predict(X) cluster_labels = np.unique(y_km) n_cluster...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Comparison to "bad" clustering:
km = KMeans(n_clusters=2, init='k-means++', n_init=10, max_iter=300, tol=1e-04, random_state=0) y_km = km.fit_predict(X) plt.scatter(X[y_km == 0, 0], X[y_km == 0, 1], s=50, c='lightgreen', edgecolor='black', ...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Organizing clusters as a hierarchical tree Grouping clusters in bottom-up fashion
Image(filename='./images/11_05.png', width=400) import pandas as pd import numpy as np np.random.seed(123) variables = ['X', 'Y', 'Z'] labels = ['ID_0', 'ID_1', 'ID_2', 'ID_3', 'ID_4'] X = np.random.random_sample([5, 3])*10 df = pd.DataFrame(X, columns=variables, index=labels) df
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Performing hierarchical clustering on a distance matrix
from scipy.spatial.distance import pdist, squareform row_dist = pd.DataFrame(squareform(pdist(df, metric='euclidean')), columns=labels, index=labels) row_dist
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
We can either pass a condensed distance matrix (upper triangular) from the `pdist` function, or we can pass the "original" data array and define the `metric='euclidean'` argument in `linkage`. However, we should not pass the squareform distance matrix, which would yield different distance values although the overall cl...
# 1. incorrect approach: Squareform distance matrix from scipy.cluster.hierarchy import linkage row_clusters = linkage(row_dist, method='complete', metric='euclidean') pd.DataFrame(row_clusters, columns=['row label 1', 'row label 2', 'distance', 'no. of items in clust.'], ...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Attaching dendrograms to a heat map
# plot row dendrogram fig = plt.figure(figsize=(8, 8), facecolor='white') axd = fig.add_axes([0.09, 0.1, 0.2, 0.6]) # note: for matplotlib < v1.5.1, please use orientation='right' row_dendr = dendrogram(row_clusters, orientation='left') # reorder data with respect to clustering df_rowclust = df.iloc[row_dendr['leaves...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Applying agglomerative clustering via scikit-learn
from sklearn.cluster import AgglomerativeClustering ac = AgglomerativeClustering(n_clusters=3, affinity='euclidean', linkage='complete') labels = ac.fit_predict(X) print('Cluster labels: %s' % labels) ac = AgglomerativeClustering(n_clusters=2, ...
Cluster labels: [0 1 1 0 0]
MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Locating regions of high density via DBSCAN
Image(filename='images/11_13.png', width=500) from sklearn.datasets import make_moons X, y = make_moons(n_samples=200, noise=0.05, random_state=0) plt.scatter(X[:, 0], X[:, 1]) plt.tight_layout() #plt.savefig('images/11_14.png', dpi=300) plt.show()
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
K-means and hierarchical clustering:
f, (ax1, ax2) = plt.subplots(1, 2, figsize=(8, 3)) km = KMeans(n_clusters=2, random_state=0) y_km = km.fit_predict(X) ax1.scatter(X[y_km == 0, 0], X[y_km == 0, 1], edgecolor='black', c='lightblue', marker='o', s=40, label='cluster 1') ax1.scatter(X[y_km == 1, 0], X[y_km == 1, 1], ed...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Density-based clustering:
from sklearn.cluster import DBSCAN db = DBSCAN(eps=0.2, min_samples=5, metric='euclidean') y_db = db.fit_predict(X) plt.scatter(X[y_db == 0, 0], X[y_db == 0, 1], c='lightblue', marker='o', s=40, edgecolor='black', label='cluster 1') plt.scatter(X[y_db == 1, 0], X[y_db == 1, 1], ...
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MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Summary ... ---Readers may ignore the next cell.
! python ../.convert_notebook_to_script.py --input ch11.ipynb --output ch11.py
[NbConvertApp] Converting notebook ch11.ipynb to script [NbConvertApp] Writing 14002 bytes to ch11.py
MIT
python-machine-learning-book-2nd-edition/code/ch11/ch11.ipynb
gopala-kr/ds-notebooks
Batch NormalizationOne way to make deep networks easier to train is to use more sophisticated optimization procedures such as SGD+momentum, RMSProp, or Adam. Another strategy is to change the architecture of the network to make it easier to train. One idea along these lines is batch normalization which was proposed by...
# As usual, a bit of setup import time import numpy as np import matplotlib.pyplot as plt from cs231n.classifiers.fc_net import * from cs231n.data_utils import get_CIFAR10_data from cs231n.gradient_check import eval_numerical_gradient, eval_numerical_gradient_array from cs231n.solver import Solver %matplotlib inline p...
X_train: (49000, 3, 32, 32) y_train: (49000,) X_val: (1000, 3, 32, 32) y_val: (1000,) X_test: (1000, 3, 32, 32) y_test: (1000,)
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Batch normalization: forwardIn the file `cs231n/layers.py`, implement the batch normalization forward pass in the function `batchnorm_forward`. Once you have done so, run the following to test your implementation.Referencing the paper linked to above would be helpful!
# Check the training-time forward pass by checking means and variances # of features both before and after batch normalization # Simulate the forward pass for a two-layer network np.random.seed(231) N, D1, D2, D3 = 200, 50, 60, 3 X = np.random.randn(N, D1) W1 = np.random.randn(D1, D2) W2 = np.random.randn(D2, D3) a...
After batch normalization (test-time): means: [-0.03927353 -0.04349151 -0.10452686] stds: [1.01531399 1.01238345 0.97819961]
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Batch normalization: backwardNow implement the backward pass for batch normalization in the function `batchnorm_backward`.To derive the backward pass you should write out the computation graph for batch normalization and backprop through each of the intermediate nodes. Some intermediates may have multiple outgoing bra...
# Gradient check batchnorm backward pass np.random.seed(231) N, D = 4, 5 x = 5 * np.random.randn(N, D) + 12 gamma = np.random.randn(D) beta = np.random.randn(D) dout = np.random.randn(N, D) bn_param = {'mode': 'train'} fx = lambda x: batchnorm_forward(x, gamma, beta, bn_param)[0] fg = lambda a: batchnorm_forward(x, a,...
dx error: 1.6674604875341426e-09 dgamma error: 7.417225040694815e-13 dbeta error: 2.379446949959628e-12
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Batch normalization: alternative backwardIn class we talked about two different implementations for the sigmoid backward pass. One strategy is to write out a computation graph composed of simple operations and backprop through all intermediate values. Another strategy is to work out the derivatives on paper. For examp...
np.random.seed(231) N, D = 100, 500 x = 5 * np.random.randn(N, D) + 12 gamma = np.random.randn(D) beta = np.random.randn(D) dout = np.random.randn(N, D) bn_param = {'mode': 'train'} out, cache = batchnorm_forward(x, gamma, beta, bn_param) t1 = time.time() dx1, dgamma1, dbeta1 = batchnorm_backward(dout, cache) t2 = ti...
dx difference: 9.890497291190823e-13 dgamma difference: 0.0 dbeta difference: 0.0 speedup: 3.19x
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Fully Connected Nets with Batch NormalizationNow that you have a working implementation for batch normalization, go back to your `FullyConnectedNet` in the file `cs231n/classifiers/fc_net.py`. Modify your implementation to add batch normalization.Concretely, when the `normalization` flag is set to `"batchnorm"` in the...
np.random.seed(231) N, D, H1, H2, C = 2, 15, 20, 30, 10 X = np.random.randn(N, D) y = np.random.randint(C, size=(N,)) # You should expect losses between 1e-4~1e-10 for W, # losses between 1e-08~1e-10 for b, # and losses between 1e-08~1e-09 for beta and gammas. for reg in [0, 3.14]: print('Running check with reg = '...
Running check with reg = 0 Initial loss: 2.2611955101340957 W1 relative error: 1.10e-04 W2 relative error: 3.11e-06 W3 relative error: 4.05e-10 b1 relative error: 4.44e-08 b2 relative error: 2.22e-08 b3 relative error: 1.01e-10 beta1 relative error: 7.33e-09 beta2 relative error: 1.89e-09 gamma1 relative error: 6.96e...
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Batchnorm for deep networksRun the following to train a six-layer network on a subset of 1000 training examples both with and without batch normalization.
np.random.seed(231) # Try training a very deep net with batchnorm hidden_dims = [100, 100, 100, 100, 100] num_train = 1000 small_data = { 'X_train': data['X_train'][:num_train], 'y_train': data['y_train'][:num_train], 'X_val': data['X_val'], 'y_val': data['y_val'], } weight_scale = 2e-2 bn_model = FullyConnec...
(Iteration 1 / 200) loss: 2.340974 (Epoch 0 / 10) train acc: 0.107000; val_acc: 0.107000 (Epoch 1 / 10) train acc: 0.324000; val_acc: 0.264000 (Iteration 21 / 200) loss: 1.996679 (Epoch 2 / 10) train acc: 0.426000; val_acc: 0.303000 (Iteration 41 / 200) loss: 2.038482 (Epoch 3 / 10) train acc: 0.483000; val_acc: 0.3130...
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Run the following to visualize the results from two networks trained above. You should find that using batch normalization helps the network to converge much faster.
def plot_training_history(title, label, baseline, bn_solvers, plot_fn, bl_marker='.', bn_marker='.', labels=None): """utility function for plotting training history""" plt.title(title) plt.xlabel(label) bn_plots = [plot_fn(bn_solver) for bn_solver in bn_solvers] bl_plot = plot_fn(baseline) num_b...
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MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Batch normalization and initializationWe will now run a small experiment to study the interaction of batch normalization and weight initialization.The first cell will train 8-layer networks both with and without batch normalization using different scales for weight initialization. The second layer will plot training a...
np.random.seed(231) # Try training a very deep net with batchnorm hidden_dims = [50, 50, 50, 50, 50, 50, 50] num_train = 1000 small_data = { 'X_train': data['X_train'][:num_train], 'y_train': data['y_train'][:num_train], 'X_val': data['X_val'], 'y_val': data['y_val'], } bn_solvers_ws = {} solvers_ws = {} weigh...
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MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Inline Question 1:Describe the results of this experiment. How does the scale of weight initialization affect models with/without batch normalization differently, and why? Answer:Bacth norm is robust to weight initialisatio scale upto a point - after which both break. Batch normalization and batch sizeWe will now ru...
def run_batchsize_experiments(normalization_mode): np.random.seed(231) # Try training a very deep net with batchnorm hidden_dims = [100, 100, 100, 100, 100] num_train = 1000 small_data = { 'X_train': data['X_train'][:num_train], 'y_train': data['y_train'][:num_train], 'X_val': data...
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MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Inline Question 2:Describe the results of this experiment. What does this imply about the relationship between batch normalization and batch size? Why is this relationship observed? Answer:Batchnorm is sensitive to batch size because mean and variance depend on these minibatches of data. Layer NormalizationBatch norm...
N, D = x.shape print('X-shape :', x.shape) mean = np.mean(x, axis = 1, keepdims = True)/D print('mean-shape :', mean.shape) #xmu = (x.T - mu.T).T #print('xmu-shape :', xmu.shape) temp = np.ones((1,D)) munew = np.matmul(mean, temp) xmu = x - munew print('xmu-shape :', xmu.shape) # Check the training-time forward pass...
dx error: 2.107277492956569e-09 dgamma error: 4.519489546032799e-12 dbeta error: 2.5842537629899423e-12
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
Layer Normalization and batch sizeWe will now run the previous batch size experiment with layer normalization instead of batch normalization. Compared to the previous experiment, you should see a markedly smaller influence of batch size on the training history!
ln_solvers_bsize, solver_bsize, batch_sizes = run_batchsize_experiments('layernorm') plt.subplot(2, 1, 1) plot_training_history('Training accuracy (Layer Normalization)','Epoch', solver_bsize, ln_solvers_bsize, \ lambda x: x.train_acc_history, bl_marker='-^', bn_marker='-o', labels=batch_sizes) p...
No normalization: batch size = 5 Normalization: batch size = 5 Normalization: batch size = 10 Normalization: batch size = 50
MIT
assignment2/BatchNormalization.ipynb
lalithnag/cs231n
More Information about Synestias[When Earth and the Moon Were One](https://www.scientificamerican.com/article/when-earth-and-the-moon-were-one/)by Simon J. Lock and Sarah T. StewartScientific American, July 2019. Check your local library for anonline or print subscription.[Where did the Moon come from? A New Theory](h...
from IPython.display import YouTubeVideo YouTubeVideo('7uRPPaYuu44', width=640, height=360)
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MIT
synestia-book/_build/jupyter_execute/docs/MoreInformation.ipynb
ststewart/synestiabook2
Introduction to Neural NetworksIn this notebook you will learn how to create and use a neural network to classify articles of clothing. To achieve this, we will use a sub module of TensorFlow called *keras*.*This guide is based on the following TensorFlow documentation.*https://www.tensorflow.org/tutorials/keras/classi...
%tensorflow_version 2.x # this line is not required unless you are in a notebook # TensorFlow and tf.keras import tensorflow as tf from tensorflow import keras # Helper libraries import numpy as np import matplotlib.pyplot as plt
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
DatasetFor this tutorial we will use the MNIST Fashion Dataset. This is a dataset that is included in keras.This dataset includes 60,000 images for training and 10,000 images for validation/testing.
fashion_mnist = keras.datasets.fashion_mnist # load dataset (train_images, train_labels), (test_images, test_labels) = fashion_mnist.load_data() # split into tetsing and training
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Let's have a look at this data to see what we are working with.
train_images.shape
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
So we've got 60,000 images that are made up of 28x28 pixels (784 in total).
train_images[0,23,23] # let's have a look at one pixel
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Our pixel values are between 0 and 255, 0 being black and 255 being white. This means we have a grayscale image as there are no color channels.
train_labels[:10] # let's have a look at the first 10 training labels
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Our labels are integers ranging from 0 - 9. Each integer represents a specific article of clothing. We'll create an array of label names to indicate which is which.
class_names = ['T-shirt/top', 'Trouser', 'Pullover', 'Dress', 'Coat', 'Sandal', 'Shirt', 'Sneaker', 'Bag', 'Ankle boot']
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Fianlly let's look at what some of these images look like!
plt.figure() plt.imshow(train_images[1]) plt.colorbar() plt.grid(False) plt.show()
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AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Data PreprocessingThe last step before creating our model is to *preprocess* our data. This simply means applying some prior transformations to our data before feeding it the model. In this case we will simply scale all our greyscale pixel values (0-255) to be between 0 and 1. We can do this by dividing each value in t...
train_images = train_images / 255.0 test_images = test_images / 255.0
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Building the ModelNow it's time to build the model! We are going to use a keras *sequential* model with three different layers. This model represents a feed-forward neural network (one that passes values from left to right). We'll break down each layer and its architecture below.
model = keras.Sequential([ keras.layers.Flatten(input_shape=(28, 28)), # input layer (1) keras.layers.Dense(128, activation='relu'), # hidden layer (2) keras.layers.Dense(10, activation='softmax') # output layer (3) ])
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
**Layer 1:** This is our input layer and it will conist of 784 neurons. We use the flatten layer with an input shape of (28,28) to denote that our input should come in in that shape. The flatten means that our layer will reshape the shape (28,28) array into a vector of 784 neurons so that each pixel will be associated ...
model.compile(optimizer='adam', loss='sparse_categorical_crossentropy', metrics=['accuracy'])
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AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Training the ModelNow it's finally time to train the model. Since we've already done all the work on our data this step is as easy as calling a single method.
model.fit(train_images, train_labels, epochs=10) # we pass the data, labels and epochs and watch the magic!
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AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Evaluating the ModelNow it's time to test/evaluate the model. We can do this quite easily using another builtin method from keras.The *verbose* argument is defined from the keras documentation as:"verbose: 0 or 1. Verbosity mode. 0 = silent, 1 = progress bar."(https://keras.io/models/sequential/)
test_loss, test_acc = model.evaluate(test_images, test_labels, verbose=1) print('Test accuracy:', test_acc)
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AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
You'll likely notice that the accuracy here is lower than when training the model. This difference is reffered to as **overfitting**.And now we have a trained model that's ready to use to predict some values! Making PredictionsTo make predictions we simply need to pass an array of data in the form we've specified in th...
predictions = model.predict(test_images)
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AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
This method returns to us an array of predictions for each image we passed it. Let's have a look at the predictions for image 1.
predictions[0]
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AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
If we wan't to get the value with the highest score we can use a useful function from numpy called ```argmax()```. This simply returns the index of the maximium value from a numpy array.
np.argmax(predictions[0])
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
And we can check if this is correct by looking at the value of the cooresponding test label.
test_labels[0]
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
Verifying PredictionsI've written a small function here to help us verify predictions with some simple visuals.
COLOR = 'white' plt.rcParams['text.color'] = COLOR plt.rcParams['axes.labelcolor'] = COLOR def predict(model, image, correct_label): class_names = ['T-shirt/top', 'Trouser', 'Pullover', 'Dress', 'Coat', 'Sandal', 'Shirt', 'Sneaker', 'Bag', 'Ankle boot'] prediction = model.predict(np.array([image])) ...
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Unlicense
AI-ML/Tensorflow fcc/Instructor notebooks/Neural Networks.ipynb
f-dufour/cheat-sheets-and-snippets
MXNet Tutorial and Hand Written Digit RecognitionIn this tutorial we will go through the basic use case of MXNet and also touch on some advanced usages. This example is based on the MNIST dataset, which contains 70,000 images of hand written characters with 28-by-28 pixel size.This tutorial covers the following topics...
%matplotlib inline import mxnet as mx import numpy as np import cv2 import matplotlib.pyplot as plt import logging logger = logging.getLogger() logger.setLevel(logging.DEBUG)
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
Network DefinitionNow we can start constructing our network:
# Variables are place holders for input arrays. We give each variable a unique name. data = mx.symbol.Variable('data') # The input is fed to a fully connected layer that computes Y=WX+b. # This is the main computation module in the network. # Each layer also needs an unique name. We'll talk more about naming in the ne...
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
We can visualize the network we just defined with MXNet's visualization module:
mx.viz.plot_network(mlp)
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
Variable NamingMXNet requires variable names to follow certain conventions:- All input arrays have a name. This includes inputs (data & label) and model parameters (weight, bias, etc).- Arrays can be renamed by creating named variable. Otherwise, a default name is given as 'SymbolName_ArrayName'. For example, FullyCon...
mlp.list_arguments()
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
Data LoadingWe fetch and load the MNIST dataset and partition it into two sets: 60000 examples for training and 10000 examples for testing. We also visualize a few examples to get an idea of what the dataset looks like.
from sklearn.datasets import fetch_mldata mnist = fetch_mldata('MNIST original') np.random.seed(1234) # set seed for deterministic ordering p = np.random.permutation(mnist.data.shape[0]) X = mnist.data[p] Y = mnist.target[p] for i in range(10): plt.subplot(1,10,i+1) plt.imshow(X[i].reshape((28,28)), cmap='Grey...
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
Now we can create data iterators from our MNIST data. A data iterator returns a batch of data examples each time for the network to process. MXNet provide a suite of basic DataIters for parsing different data format. Here we use NDArrayIter, which wraps around a numpy array and each time slice a chunk from it along the...
batch_size = 100 train_iter = mx.io.NDArrayIter(X_train, Y_train, batch_size=batch_size) test_iter = mx.io.NDArrayIter(X_test, Y_test, batch_size=batch_size)
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
TrainingWith the network and data source defined, we can finally start to train our model. We do this with MXNet's convenience wrapper for feed forward neural networks (it can also be made to handle RNNs with explicit unrolling).
model = mx.model.FeedForward( ctx = mx.gpu(0), # Run on GPU 0 symbol = mlp, # Use the network we just defined num_epoch = 10, # Train for 10 epochs learning_rate = 0.1, # Learning rate momentum = 0.9, # Momentum for SGD with momentum wd = 0.00001) # Weight decay...
INFO:root:Start training with [gpu(0)] INFO:root:Epoch[0] Batch [200] Speed: 70941.64 samples/sec Train-accuracy=0.389050 INFO:root:Epoch[0] Batch [400] Speed: 97857.94 samples/sec Train-accuracy=0.646450 INFO:root:Epoch[0] Batch [600] Speed: 70507.97 samples/sec Train-accuracy=0.743333 INFO:root:Epoch[0] Resetting Dat...
Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
EvaluationAfter the model is trained, we can evaluate it on a held out test set.First, lets classity a sample image:
plt.imshow((X_test[0].reshape((28,28))*255).astype(np.uint8), cmap='Greys_r') plt.show() print 'Result:', model.predict(X_test[0:1])[0].argmax()
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
We can also evaluate the model's accuracy on the entire test set:
print 'Accuracy:', model.score(test_iter)*100, '%'
Accuracy: 97.38 %
Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
Now, try if your model recognizes your own hand writing.Write a digit from 0 to 9 in the box below. Try to put your digit in the middle of the box.
# run hand drawing test from IPython.display import HTML def classify(img): img = img[len('data:image/png;base64,'):].decode('base64') img = cv2.imdecode(np.fromstring(img, np.uint8), -1) img = cv2.resize(img[:,:,3], (28,28)) img = img.astype(np.float32).reshape((1, 784))/255.0 return model.predict...
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Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
DebuggingDNNs can perform poorly for a lot of reasons, like learning rate too big/small, initialization too big/small, network structure not reasonable, etc. When this happens it's often helpful to print out the weights and intermediate outputs to understand what's going on. MXNet provides a monitor utility that does ...
def norm_stat(d): """The statistics you want to see. We compute the L2 norm here but you can change it to anything you like.""" return mx.nd.norm(d)/np.sqrt(d.size) mon = mx.mon.Monitor( 100, # Print every 100 batches norm_stat, # The statistics function defined above p...
INFO:root:Start training with [gpu(0)] INFO:root:Batch: 1 fc1_backward_weight 0.000519617 INFO:root:Batch: 1 fc1_weight 0.00577777 INFO:root:Batch: 1 fc2_backward_weight 0.00164324 INFO:root:Batch: 1 fc2_weight 0.00577121 INFO:roo...
Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
Under the hood: Custom Training Loop`mx.model.FeedForward` is a convenience wrapper for training standard feed forward networks. What if the model you are working with is more complicated? With MXNet, you can easily control every aspect of training by writing your own training loop.Neural network training typically ha...
# ==================Binding===================== # The symbol we created is only a graph description. # To run it, we first need to allocate memory and create an executor by 'binding' it. # In order to bind a symbol, we need at least two pieces of information: context and input shapes. # Context specifies which device ...
input_shapes {'softmax_label': (100,), 'data': (100, 784)} epoch: 0 iter: 100 metric: ('accuracy', 0.1427) epoch: 0 iter: 200 metric: ('accuracy', 0.42695) epoch: 0 iter: 300 metric: ('accuracy', 0.5826333333333333) epoch: 0 iter: 400 metric: ('accuracy', 0.66875) epoch: 0 iter: 500 metric: ('accuracy', 0.72238) epoch:...
Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
New OperatorsMXNet provides a repository of common operators (or layers). However, new models often require new layers. There are several ways to [create new operators](https://mxnet.readthedocs.org/en/latest/tutorial/new_op_howto.html) with MXNet. Here we talk about the easiest way: pure python.
# Define custom softmax operator class NumpySoftmax(mx.operator.NumpyOp): def __init__(self): # Call the parent class constructor. # Because NumpySoftmax is a loss layer, it doesn't need gradient input from layers above. super(NumpySoftmax, self).__init__(need_top_grad=False) def l...
INFO:root:Start training with [gpu(0)] INFO:root:Epoch[0] Batch [100] Speed: 53975.81 samples/sec Train-accuracy=0.167800 INFO:root:Epoch[0] Batch [200] Speed: 75720.80 samples/sec Train-accuracy=0.455800 INFO:root:Epoch[0] Batch [300] Speed: 73701.82 samples/sec Train-accuracy=0.602833 INFO:root:Epoch[0] Batch [400] S...
Apache-2.0
python/moved-from-mxnet/tutorial.ipynb
marktab/mxnet-notebooks
Challenge 026 - Giant Squid!This challenge is taken from Advent of Code 2021 - Day 4: Giant Squid (https://adventofcode.com/2021/day/4). Problem - Part 1You're already almost 1.5km (almost a mile) below the surface of the ocean, already so deep that you can't see any sunlight. What you can see, however, is a giant squ...
class Board: def __init__(self): self.position = {} self.bingo= { "column": [0,0,0,0,0], "row": [0,0,0,0,0] } self.playBoard = [ [0,0,0,0,0], [0,0,0,0,0], [0,0,0,0,0], [0,0,0,0,0], [0,0,0,0,0], ...
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MIT
challenges/026-Giant_Squid/026-Day04_Giant_Squid.ipynb
jfdaniel77/interview-challenge
Problem - Part 2On the other hand, it might be wise to try a different strategy: let the giant squid win.You aren't sure how many bingo boards a giant squid could play at once, so rather than waste time counting its arms, the safe thing to do is to figure out which board will win last and choose that one. That way, no...
class Board: def __init__(self): self.position = {} self.bingo= { "column": [0,0,0,0,0], "row": [0,0,0,0,0] } self.playBoard = [ [0,0,0,0,0], [0,0,0,0,0], [0,0,0,0,0], [0,0,0,0,0], [0,0,0,0,0], ...
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MIT
challenges/026-Giant_Squid/026-Day04_Giant_Squid.ipynb
jfdaniel77/interview-challenge
Parallel Processing with Dask====<img src="http://dask.readthedocs.io/en/latest/_images/dask_horizontal.svg" width="30%" align=right alt="Dask logo"> Learning Objectives* get acquanted with the Python Dask Library* learn how to execute basic operations on large arrays which cannot fit in RAM* learn about...
from dask.distributed import Client client = Client(processes=False) client
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
The distributed scheduler provides nice diagnostic tools which are useful to gain insight on the computation. They can reveal processing bottlenecks and are useful when running a scalable cluster (like kubernetes) and monitoring nodes.
# If we have set up a Kubernetes cluster we can start it in the following way: #from dask_kubernetes import KubeCluster #cluster = KubeCluster() #cluster.scale(4) #cluster
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Dask ArraysA dask array looks and feels a lot like a numpy array.However, a dask array doesn't directly hold any data.Instead, it symbolically represents the computations needed to generate the data.Nothing is actually computed until the actual numerical values are needed.This mode of operation is called "lazy"; it al...
import numpy as np shape = (1000, 4000) ones_np = np.ones(shape) ones_np
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
This size of the array is:
print('%.1f MB' % (ones_np.nbytes / 1e6))
32.0 MB
CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Now let's create the same array using dask's array interface.
import dask.array as da ones = da.ones(shape) ones
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
This works, but we didn't tell dask how to split up the array, so it is not optimized for distributed computation.A crucal difference with dask is that we must specify the `chunks` argument. "Chunks" describes how the array is split up over many sub-arrays.![Dask Arrays](http://dask.pydata.org/en/latest/_images/dask-ar...
chunk_shape = (1000, 1000) ones = da.ones(shape, chunks=chunk_shape) ones
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Notice that we just see a symbolic represetnation of the array, including its shape, dtype, and chunksize.No data has been generated yet.When we call `.compute()` on a dask array, the computation is trigger and the dask array becomes a numpy array.
ones.compute()
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Task Graphs In order to understand what happened when we called `.compute()`, we can visualize the dask _graph_, the symbolic operations that make up the array
ones.visualize()
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Our array has four chunks. To generate it, dask calls `np.ones` four times and then concatenates this together into one array.Rather than immediately loading a dask array (which puts all the data into RAM), it is more common to reduce the data somehow. For example:
sum_of_ones = ones.sum() sum_of_ones.visualize()
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Here we see dask's strategy for finding the sum. This simple example illustrates the beauty of dask: it automatically designs an algorithm appropriate for custom operations with big data. If we make our operation more complex, the graph gets more complex.
fancy_calculation = (ones * ones[::-1, ::-1]).mean() fancy_calculation.visualize()
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
A Bigger CalculationThe examples above were toy examples; the data (32 MB) is nowhere nearly big enough to warrant the use of dask.We can make it a lot bigger!
bigshape = (100000, 4000) big_ones = da.ones(bigshape, chunks=chunk_shape) big_ones print('%.1f MB' % (big_ones.nbytes / 1e6))
3200.0 MB
CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
This dataset is 6.4 GB, rather than 32 MB! This is probably close to or greater than the amount of available RAM than you have in your computer. Nevertheless, dask has no problem working on it._Do not try to `.visualize()` this array!_When doing a big calculation, dask also has some tools to help us understand what is ...
pip install bokeh !jupyter nbextension enable --py widgetsnbextension big_calc = (big_ones * big_ones[::-1, ::-1]).mean() from dask.distributed import get_task_stream with get_task_stream(filename="task-stream.html",plot=True) as ts: big_calc.compute() #client.profile(filename="dask-profile.html") from bokeh.plot...
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Reduction All the usual numpy methods work on dask arrays.You can also apply numpy function directly to a dask array, and it will stay lazy.
big_ones_reduce = (np.cos(big_ones)**2).mean(axis=1) big_ones_reduce from matplotlib import pyplot as plt %matplotlib inline plt.rcParams['figure.figsize'] = (12,8)
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Plotting also triggers computation, since we need the actual values
plt.plot(big_ones_reduce)
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Dask DelayedDask.delayed is a simple and powerful way to parallelize existing code. It allows users to delay function calls into a task graph with dependencies. Dask.delayed doesn't provide any fancy parallel algorithms like Dask.dataframe, but it does give the user complete control over what they want to build.Syst...
import time def inc(x): time.sleep(0.1) return x + 1 def dec(x): time.sleep(0.1) return x - 1 def add(x, y): time.sleep(0.2) return x + y
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
We can run them like normal Python functions below
%%time x = inc(1) y = dec(2) z = add(x, y) z
CPU times: user 64.8 ms, sys: 11.4 ms, total: 76.2 ms Wall time: 401 ms
CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
These ran one after the other, in sequence. Note though that the first two lines `inc(1)` and `dec(2)` don't depend on each other, we *could* have called them in parallel had we been clever. Annotate functions with Dask Delayed to make them lazyWe can call `dask.delayed` on our funtions to make them lazy. Rather than...
import dask inc = dask.delayed(inc) dec = dask.delayed(dec) add = dask.delayed(add)
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Calling these lazy functions is now almost free. We're just constructing a graph
%%time x = inc(1) y = dec(2) z = add(x, y) z
CPU times: user 367 µs, sys: 0 ns, total: 367 µs Wall time: 335 µs
CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Visualize computation
z.visualize(rankdir='LR')
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Run in parallelCall `.compute()` when you want your result as a normal Python objectIf you started `Client()` above then you may want to watch the status page during computation.
%%time z.compute()
CPU times: user 74.6 ms, sys: 7.71 ms, total: 82.3 ms Wall time: 323 ms
CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
Parallelize Normal Python codeNow we use Dask in normal for-loopy Python code. This generates graphs instead of doing computations directly, but still looks like the code we had before. Dask is a convenient way to add parallelism to existing workflows.
%%time zs = [] for i in range(256): x = inc(i) y = dec(x) z = add(x, y) zs.append(z) zs = dask.persist(*zs) # trigger computation in the background
CPU times: user 147 ms, sys: 16.9 ms, total: 164 ms Wall time: 167 ms
CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
In general `dask.delayed` is useful when the output of the individual parallel tasks are in a dask format (like dask.array) and are intended to be concatenated in one big dask object. Dask SchedulersThe Dask *Schedulers* orchestrate the tasks in the Task Graphs so that they can be run in parallel. *How* they run in p...
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CC-BY-4.0
notebooks/2_dask_colab.ipynb
oceanhackweek/Oceans19-data-science-tutorial
多层感知机 --- 使用Gluon我们只需要稍微改动[多类Logistic回归](../chapter_crashcourse/softmax-regression-gluon.md)来实现多层感知机。 定义模型唯一的区别在这里,我们加了一行进来。
from mxnet import gluon net = gluon.nn.Sequential() with net.name_scope(): net.add(gluon.nn.Flatten()) net.add(gluon.nn.Dense(256, activation="relu")) net.add(gluon.nn.Dense(10)) net.initialize()
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Apache-2.0
chapter_supervised-learning/mlp-gluon.ipynb
kyoyo/gluon_tutorials_zh_git
读取数据并训练
import sys sys.path.append('..') from mxnet import ndarray as nd from mxnet import autograd import utils batch_size = 256 train_data, test_data = utils.load_data_fashion_mnist(batch_size) softmax_cross_entropy = gluon.loss.SoftmaxCrossEntropyLoss() trainer = gluon.Trainer(net.collect_params(), 'sgd', {'learning_rate...
Epoch 0. Loss: 0.694022, Train acc 0.745893, Test acc 0.817508
Apache-2.0
chapter_supervised-learning/mlp-gluon.ipynb
kyoyo/gluon_tutorials_zh_git
Direct Links1. [To get top 10 by genre](best_genre)2. [To get top 10 similar users](top_ten)
# Reading the ratings data ratings = pd.read_csv('Dataset/ratings.csv') len(ratings) #Just taking the required columns ratings = ratings[['userId', 'movieId','rating']] # Checking if the user has rated the same movie twice, in that case we just take max of them ratings_df = ratings.groupby(['userId','movieId']).aggrega...
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MIT
MovieLens_Recommendation_Notebook-Copy1.ipynb
nikita9604/Movie-Recommendation-Website-based-on-Genre
Reading movie_score.csv directly
#movie_score.to_csv('movie_score.csv', index = False) movie_score = pd.read_csv('movie_score.csv') movie_score.head() # Gives the best movies according to genre based on weighted score which is calculated using IMDB formula def best_movies_by_genre(genre,top_n): return pd.DataFrame(movie_score.loc[(movie_score[gen...
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MIT
MovieLens_Recommendation_Notebook-Copy1.ipynb
nikita9604/Movie-Recommendation-Website-based-on-Genre
Gets the other top 10 movies which are watched by the people who saw this particular movie
#ratings_movies.to_csv('ratings_movies.csv', index = False) ratings_movies = pd.read_csv('ratings_movies.csv') ratings_movies.head() #Gets the other top 10 movies which are watched by the people who saw this particular movie def get_other_movies(movie_name): #get all users who watched a specific movie df_movie...
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MIT
MovieLens_Recommendation_Notebook-Copy1.ipynb
nikita9604/Movie-Recommendation-Website-based-on-Genre
Directly getting top 10 movies based on content similarity
movie_content_df_temp = pd.read_csv('mv_cnt_tmp.csv') movie_content_df_temp.head() a_file = open("indicies.pkl", "rb") inds = pickle.load(a_file) a_file.close() inds['Skyfall (2012)'] from numpy import load data_dict = load('cosine.npz') cosine_sim = data_dict['arr_0'] cosine_sim cosine_sim.shape #Gets the top 10 sim...
7120 14026
MIT
MovieLens_Recommendation_Notebook-Copy1.ipynb
nikita9604/Movie-Recommendation-Website-based-on-Genre
User_index is row and Movie_index is column and value is rating
#Create two user-item matrices, one for training and another for testing train_data_matrix = np.zeros((n_users, n_items)) #for every line in the data for line in df_train.itertuples(): #set the value in the column and row to #line[1] is userId, line[2] is movieId and line[3] is rating, line[4] is movie_ind...
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MIT
MovieLens_Recommendation_Notebook-Copy1.ipynb
nikita9604/Movie-Recommendation-Website-based-on-Genre
CF Part 1 - Data loading and EDA> Collaborative Filtering on MovieLens Latest-small Part 1 - Downloading movielens latest small dataset and exploratory data analysis- toc: false- badges: true- comments: true- categories: [movie, collaborative]- image:
import matplotlib.pyplot as plt import pandas as pd import numpy as np import sys import os from scipy.sparse import csr_matrix from sklearn.preprocessing import LabelEncoder !wget http://files.grouplens.org/datasets/movielens/ml-latest-small.zip !unzip ml-latest-small.zip DOWNLOAD_DESTINATION_DIR = "/content/ml-lates...
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Apache-2.0
_notebooks/2021-06-23-collaborative-filtering-movielens-latest-small-01.ipynb
recohut/notebook
Ratings range from $0.5$ to $5.0$, with a step of $0.5$. The above histogram presents the repartition of ratings in the dataset. the two most commun ratings are $4.0$ and $3.0$ and the less common ratings are $0.5$ and $1.5$
# average rating of movies movie_means = ratings.join(movies['title'], on='itemid').groupby('title').rating.mean() movie_means[:50].plot(kind='bar', grid=True, figsize=(16,6), title="mean ratings of 50 movies"); # 30 most rated movies vs. 30 less rated movies fig, (ax1, ax2) = plt.subplots(ncols=2, figsize=(16,4), shar...
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Apache-2.0
_notebooks/2021-06-23-collaborative-filtering-movielens-latest-small-01.ipynb
recohut/notebook
multi variable에 대한 linear regression의 코드를 리뷰해보자
import tensorflow as tf import numpy as np tf.set_random_seed(777) # for reproducibility x1_data = [73., 93., 89., 96., 73.] x2_data = [80., 88., 91., 98., 66.] x3_data = [75., 93., 90., 100., 70.] # Hypothesis / y hat y_data = [152., 185., 180., 196., 142.] x1 = tf.placeholder(tf.float32) x2 = tf.placeholder(tf.floa...
x1 : [87.0] , x2 : [82.0] , x3 : [91.0] Prediction: [ 177.55586243]
MIT
code/multi_variable_linear_regression_01_start.ipynb
zeran4/justdoit
Find the missing targets
ndat = np.load('more_targets.npy', allow_pickle=True) flare_table = Table.read('new_flares.tab', format='ascii') lks = [] for tic in np.unique(flare_table['Target_ID']): s = search_lightcurve('TIC {}'.format(int(tic)), author='SPOC', exptime=120, mission='TESS') d = s[s.year<2020][0]....
WARNING: AstropyDeprecationWarning: medlim.csv already exists. Automatically overwriting ASCII files is deprecated. Use the argument 'overwrite=True' in the future. [astropy.io.ascii.ui] WARNING: AstropyDeprecationWarning: lowlim.csv already exists. Automatically overwriting ASCII files is deprecated. Use the argument ...
MIT
braiding/plotting.ipynb
afeinstein20/flares_soc
Load Tables
medlim = Table.read('medlim.csv',format='csv') lowlim = Table.read('lowlim.csv',format='csv') upplim = Table.read('upplim.csv',format='csv')
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MIT
braiding/plotting.ipynb
afeinstein20/flares_soc
Plot the light curves
outliers = np.unique(medlim[(medlim['amp']>=1) & (medlim['Prot']<3)]['TIC_ID']) lk = [] tic_tracker=[] for tic in outliers: print(tic) d = search_lightcurve('TIC {}'.format(tic), mission='TESS', author='SPOC').download_all().stitch() lk.append(d) tic_tracker.append(d.meta['TI...
2 4 10 14 9
MIT
braiding/plotting.ipynb
afeinstein20/flares_soc
Rotation period plot
fig = plt.figure(figsize=(8,6)) fig.set_facecolor('w') plt.scatter(mgun['bp']-mgun['rp'], mgun['period_days'], c=mgun['flare_rates'], vmin=0, vmax=0.5, cmap=parula_map) plt.yscale('log') plt.ylabel('Rotation Period [days]') plt.xlabel('$B_p - R_p$') plt.xlim(-1,5) plt....
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MIT
braiding/plotting.ipynb
afeinstein20/flares_soc
Fitting the Flare Frequency Distributions
def slope_fit(x, n, i=0, j=1, plot=False, init=[-1.5,-2], bounds=((-10.0, 10.0), (-1000, 1000))): logx = np.log10(x) logn = np.log10(n) q = ((np.isnan(logn) == False) & (np.isfinite(logn)==True)) if plot: plt.plot(logx[i:j], np.log10(n[i:j]), '.', c='k') plt.plot...
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MIT
braiding/plotting.ipynb
afeinstein20/flares_soc
Amplitude Binning
bins = np.logspace(np.log10(1), np.log10(500),20) cut = 3 outslow = [] outfast = [] for t in [medlim, upplim, lowlim]: os = plt.hist(t[t['Prot']>=cut]['amp']*100, bins=bins, weights=np.full(len(t[t['Prot']>=cut]['amp']), 1.0/np.nansum(t[t['Prot']>=cut]['Total_obs_t...
//anaconda3/lib/python3.7/site-packages/ipykernel_launcher.py:94: MatplotlibDeprecationWarning: savefig() got unexpected keyword argument "rasterize" which is no longer supported as of 3.3 and will become an error in 3.6
MIT
braiding/plotting.ipynb
afeinstein20/flares_soc
Feature Transformation with Amazon a SageMaker Processing Job and Scikit-LearnIn this notebook, we convert raw text into BERT embeddings. This will allow us to perform natural language processing tasks such as text classification.Typically a machine learning (ML) process consists of few steps. First, gathering data w...
import sagemaker import boto3 sess = sagemaker.Session() role = sagemaker.get_execution_role() bucket = sess.default_bucket() region = boto3.Session().region_name sm = boto3.Session().client(service_name="sagemaker", region_name=region) s3 = boto3.Session().client(service_name="s3", region_name=region)
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Apache-2.0
06_prepare/02_Prepare_Dataset_BERT_Scikit_ScriptMode_FeatureStore.ipynb
MarcusFra/workshop
Setup Input Data
%store -r s3_public_path_tsv try: s3_public_path_tsv except NameError: print("++++++++++++++++++++++++++++++++++++++++++++++++++++++++") print("[ERROR] Please run the notebooks in the INGEST section before you continue.") print("++++++++++++++++++++++++++++++++++++++++++++++++++++++++") print(s3_public_...
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Apache-2.0
06_prepare/02_Prepare_Dataset_BERT_Scikit_ScriptMode_FeatureStore.ipynb
MarcusFra/workshop