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Simulating From the Null HypothesisLoad in the data below, and follow the questions to assist with answering the quiz questions below.
import pandas as pd import numpy as np import matplotlib.pyplot as plt %matplotlib inline np.random.seed(42) full_data = pd.read_csv('../data/coffee_dataset.csv') sample_data = full_data.sample(200)
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MIT
hypothesis_testing/10_HypothesisTesting/13_Simulating From the Null Hypothesis.ipynb
Zabamund/datasci-nano
`1.` If you were interested in if the average height for coffee drinkers is the same as for non-coffee drinkers, what would the null and alternative be? Place them in the cell below, and use your answer to answer the first quiz question below. **Since there is no directional component associated with this statement, a...
nocoff_means, coff_means, diffs = [], [], [] for _ in range(10000): bootsamp = sample_data.sample(200, replace = True) coff_mean = bootsamp[bootsamp['drinks_coffee'] == True]['height'].mean() nocoff_mean = bootsamp[bootsamp['drinks_coffee'] == False]['height'].mean() # append the info coff_means.a...
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MIT
hypothesis_testing/10_HypothesisTesting/13_Simulating From the Null Hypothesis.ipynb
Zabamund/datasci-nano
`4.` Now, use your sampling distribution for the difference in means and [the docs](https://docs.scipy.org/doc/numpy-1.13.0/reference/generated/numpy.random.normal.html) to simulate what you would expect if your sampling distribution were centered on zero. Also, calculate the observed sample mean difference in `sample...
null_vals = np.random.normal(0, np.std(diffs), 10000) # Here are 10000 draws from the sampling distribution under the null plt.hist(null_vals); #Here is the sampling distribution of the difference under the null
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MIT
hypothesis_testing/10_HypothesisTesting/13_Simulating From the Null Hypothesis.ipynb
Zabamund/datasci-nano
Iterators, Generators, and Uncertainty Suppose you are working on a Python API that provides access to a real-time data stream (perhaps from an array of sensors or from a web service that handles user requests). You would like to deliver to the consumers of your API a simple but flexible abstraction that allows them t...
class skips: def __init__(self): self.integer = 0 def __next__(self): self.integer += 2 return self.integer
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Now it is possible to use the built-in [`next`](https://docs.python.org/3/library/functions.htmlnext) function to retrieve each item one at a time from an instance of the `skips` data structure.
ns = skips() [next(ns), next(ns), next(ns)]
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
The number of items over which the data structure will iterate can be limited by raising the `StopIteration` exception when more items can not (or should not) be returned.
class skips: def __init__(self, start, end): self.integer = start-2 self.end = end def __next__(self): self.integer += 2 if self.integer > self.end: raise StopIteration return self.integer
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
It is then the responsibility of any code that uses an instance of this iterator to catch this exception and handle it appropriately. It is worth acknowledging that this is a somewhat unusual use of a language feature normally associated with catching errors (because an iterator being exhausted is not always an error c...
ns = skips(0, 10) while True: try: print(next(ns)) except StopIteration: break
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Iterables In Python, there is a distinction between an *iterator* and an *iterable data structure*. This distinction is useful to maintain for a variety of reasons, including the ones below.* You may not want to clutter a data structure (as it may represent a spreadsheet, a database table, a large graph, and so on) wi...
class interval: def __init__(self, lower, upper): self.lower = lower self.upper = upper def evens(self): return skips( self.lower + (0 if (self.lower % 2) == 0 else 1), self.upper ) def odds(self): return skips( self.lower + (...
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
The example below illustrates how an iterator returned by one of the methods in the definition of `interval` can be used.
ns = interval(0, 10).odds() while True: # Keep iterating and printing until exhaustion. try: print(next(ns)) except StopIteration: break
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
So far in this article, the distinction between *iterators* and *iterable data structures* has been explicit for clarity. However, the convention that is supported (and sometimes expected) throughout Python is that an iterable data structure has a *single* iterator that can be used to iterate over it. This iterator is ...
class every: def __init__(self, start, end): self.integer = start - 1 self.end = end def __next__(self): self.integer += 1 if self.integer > self.end: raise StopIteration return self.integer class interval: def __init__(self, lower, upper): self....
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Python's built-in [`iter`](https://docs.python.org/3/library/functions.htmliter) function can be used to invoke `__iter__` for an instance of this data structure.
ns = iter(interval(1, 3)) while True: # Keep iterating and printing until exhaustion. try: print(next(ns)) except StopIteration: break
1 2 3
MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Including a definition for an `__iter__` method also makes it possible to use many of Python's built-in functions and language constructs that expect an iterable data structure. This includes functions such as [`list`](https://docs.python.org/3/library/functions.htmlfunc-list) and [`set`](https://docs.python.org/3/libr...
list(interval(0, 10)), set(interval(0, 10))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
This also includes comprehensions and `for` loops.
for n in interval(1, 4): print([k for k in interval(1, n)])
[1] [1, 2] [1, 2, 3] [1, 2, 3, 4]
MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
There is nothing stopping you from making the iterator itself an iterable by having it return itself, as in the variant below.
class every: def __init__(self, start, end): self.integer = start - 1 self.end = end def __next__(self): self.integer += 1 if self.integer > self.end: raise StopIteration return self.integer def __iter__(self): return self
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
This approach ensures that there is no ambiguity (from a programmer's perspective) about what will happen when built-in functions such as `list` are applied to an instance of the data structure.
list(every(0, 10))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
This practice is common and is the cause of some of the confusion and conflation that occurs between iterators and iterables. In addition to the potential for confusion, users of such a data structure must be careful to use the iterator as an iterable only once (or, alternatively, the object must reset its internal sta...
ns = every(0, 10) list(ns), list(ns) # Only returns contents the first time.
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Nevertheless, this can also be a useful practice. Going back to the example with `evens` and `odds`, ensuring the iterators returned by these methods are also iterable means they can be fed directly into contexts that expect an iterable.
class skips: def __init__(self, start, end): self.integer = start - 2 self.end = end def __next__(self): self.integer += 2 if self.integer > self.end: raise StopIteration return self.integer def __iter__(self): return self class interval: de...
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
The example below illustrates how this kind of interface can be used.
i = interval(0, 10) list(i.evens()), set(i.odds())
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Generators Generators are data structures defined using either the `yield` statement or comprehension notation (also known as a [generator expression](https://docs.python.org/3/glossary.htmlterm-generator-expression)). The example below defines a generator `skips` using both approaches.
def skips(start, end): integer = start while integer <= end: yield integer integer += 2 def skips(start, end): return ( integer for integer in range(start, end) if (integer - start) % 2 == 0 )
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
When it is evaluated, a generator returns an iterator (more precisely called a [generator iterator](https://docs.python.org/3/glossary.htmlterm-generator-iterator)). These are technically both iterators and iterables. For example, as with any iterator, `next` can be applied directly to instances of this data structure.
ns = skips(0, 10) next(ns), next(ns), next(ns)
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
As with any iterator, exhaustion can be detected by catching the `StopIteration` exception.
ns = skips(0, 2) try: next(ns), next(ns), next(ns) except StopIteration: print("Exhausted generator iterator.")
Exhausted generator iterator.
MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Finally, an instance of the data structure can be used in any context that expects an iterable.
list(skips(0, 10))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
It is possible to confirm that the result of evaluating `skips` is indeed a generator by checking its type.
import types isinstance(skips(0, 10), types.GeneratorType)
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
It is also possible to inspect its type to confirm that `skips` indeed evaluates to an iterator.
import collections isinstance(skips(0, 10), collections.abc.Iterator)
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Data Structures of Infinite or Unknown Size Among the use cases that demonstrate how iterators/generators serve as a powerful language feature are scenarios involving data structures whose size is unknown or unbounded/infinite (such as streams, very large files, databases, and so on). You have already seen that you ca...
def concatenate(xs, ys): for x in xs: yield x for y in ys: yield y
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Concatenating two instances of an iterable data structure is now straightforward.
list(concatenate(skips(0,5), skips(6,11)))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Notice that if the first iterable is never exhausted, the second one will never be used. To address the second requirement, first consider a simpler scenario. What if you would like to "line up" or "pair up" entries in two or more iterables? You can use the built-in [`zip`](https://docs.python.org/3/library/functions.h...
list(zip(skips(0,5), skips(6,11)))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Notice that the result of evaluating `zip` is indeed an iterator.
import collections isinstance( zip(skips(0,5), skips(6,11)), collections.abc.Iterator )
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Combining `zip` with comprehension syntax, you can now define a generator that *interleaves* two iterables (switching back and forth between emitting an item from one and then the other).
def interleave(xs, ys): return ( z for (x, y) in zip(xs, ys) for z in (x, y) )
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
As with concatenation, interleaving is now concise and straightforward.
list(interleave(skips(0,5), skips(6,11)))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Finally, how can you help users process items from a stream in parallel? Because you are already using iterables, users have some options available to them from the built-in [`itertools`](https://docs.python.org/3/library/itertools.html) library. One option is [`islice`](https://docs.python.org/3/library/itertools.html...
from itertools import islice def batch(xs, size): ys = list(islice(xs, 0, size)) while len(ys) > 0: yield ys ys = list(islice(xs, 0, size))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Notice that this method inherits the graceful behavior of slice notation when the boundaries of the slices do not line up exactly with the number entries in the data structure instance.
list(batch(skips(0,21), 3))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
Can you define a generator that returns batches of batches (*e.g.*, at most `n` batches each of size at most `k`)? Another option is to use the [`tee`](https://docs.python.org/3/library/itertools.htmlitertools.tee) function, which can duplicate a single iterable into multiple iterables. However, this function is really...
from itertools import tee (a, b) = tee(skips(0,11), 2) (list(a), list(b))
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
The example above is arguably implemented in a more clear and familiar way by simply wrapping the iterables using `list`.
ns = list(skips(0,11)) (ns, ns)
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MIT
iterators-generators-and-uncertainty.ipynb
python-supply/iterators-generators-and-uncertainty
TAREA GRAVEDAD
%matplotlib inline import matplotlib.pyplot as plt import numpy as np m = 1 x_0 = .5 x_0_dot = .1 t = np.linspace(0, 50, 300) gravedad=np.array([9.81,2.78,8.87,3.72,22.88]) gravedad plt.figure(figsize = (7, 4)) for indx, g in enumerate (gravedad): omega_0 = np.sqrt(g/m) x_t = x_0 *np.cos(omega_0 *t) + (x_0_dot...
C:\Users\MaríaEsther\Anaconda3\lib\site-packages\matplotlib\axes\_axes.py:545: UserWarning: No labelled objects found. Use label='...' kwarg on individual plots. warnings.warn("No labelled objects found. "
MIT
Gravedad.ipynb
Urakami97/Gravedad-Tarea-
Modeling and Simulation in Python-Project 1Dhara Patel and Corinne Wilklow Copyright 2018 Allen DowneyLicense: [Creative Commons Attribution 4.0 International](https://creativecommons.org/licenses/by/4.0)
# Configure Jupyter so figures appear in the notebook %matplotlib inline # Configure Jupyter to display the assigned value after an assignment %config InteractiveShell.ast_node_interactivity='last_expr_or_assign' # import functions from the modsim library from modsim import * from pandas import read_html print('don...
population Censusyear 1910.0 92228496.0 1920.0 106021537.0 1930.0 123202624.0 1940.0 132164569.0 1950.0 151325798.0 1960.0 179323175.0 1970.0 203211926.0 1980.0 226545805.0 1990.0 248709873.0 2000.0 281421906.0 2010.0 308745538.0
MIT
code/Project_1_US_Children_9-30_final2.ipynb
cwilklow/ModSimPy
The state: initial child population, initial United States populationThe system: birth rates, child mortality rates, mature rates(birth rates 18 years prior)Metrics: annual child population
def plot_results(population, childseries, title): """Plot the estimates and the model. population: TimeSeries of historical population data childseries: TimeSeries of child population estimates title: string """ plot(population, ':', label='US Population') if len(childseries): p...
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MIT
code/Project_1_US_Children_9-30_final2.ipynb
cwilklow/ModSimPy
Why is the proportion of children in the United States decreasing? Over the past two decades, the United States population grew by about 20%. During the same time frame, the nation’s child population grew by only 5%. The population all around the world is aging, and children represent a smaller and smaller share of...
#sweeping both the mortality rate and the birth rate will make the model more accurate birthrate = [29.06, 25.03, 19.22, 22.63, 24.86, 20.33, 15.57, 15.83, 15.08, 13.97] deathrate = linspace(0.0065, 0.0031, 10) maturerate = [31.5, 29.06, 25.03, 19.22, 22.63, 24.86, 20.33, 15.57, 15.83, 15.08] print(birthrate) print(de...
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MIT
code/Project_1_US_Children_9-30_final2.ipynb
cwilklow/ModSimPy
Parameters:
system = System(birthrate = birthrate, maturerate = maturerate, deathrate = deathrate, t_0 = 1910.0, t_end = 2010.0, state=state)
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MIT
code/Project_1_US_Children_9-30_final2.ipynb
cwilklow/ModSimPy
Our update function computes the updated state of these parameters at the end of each ten year increment.
def update_func1(state, t, system): t_pop=151325798.0 if t == 1910: i = int((t-1910)/10) else: i = int((t-1910)/10 - 1) mrate = system.maturerate brate = system.birthrate drate = system.deathrate births = brate[i]/100 * state.children #metric maturings = mra...
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MIT
code/Project_1_US_Children_9-30_final2.ipynb
cwilklow/ModSimPy
To test our update function, we'll input the initial condition:
update_func1(state,system.t_0,system) def run_simulation(state, system, update_func): """Simulate the system using any update function. state: initial State object system: System object update_func: function that computes the population next year returns: TimeSeries of Ratios """ #...
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MIT
code/Project_1_US_Children_9-30_final2.ipynb
cwilklow/ModSimPy
Jupyter (iPython) Notebookを使って技術ノート環境を構築する方法myenigma.hatenablog.com
from sympy import * x=Symbol('x') %matplotlib inline init_printing() expand((x - 3)**5)
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MIT
.ipynb_checkpoints/learnJupyter-checkpoint.ipynb
kalz2q/files
Linear Regression Multiple Outputs Table of ContentsIn this lab, you will create a model the PyTroch way. This will help you more complicated models. Make Some Data Create the Model and Cost Function the PyTorch way Train the Model: Batch Gradient DescentEstimated Time Needed: 20 min Preparation We'll ...
# Import the libraries we need for this lab from torch import nn,optim import torch import numpy as np import matplotlib.pyplot as plt from mpl_toolkits.mplot3d import Axes3D from torch.utils.data import Dataset, DataLoader
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Set the random seed:
# Set the random seed to 1. torch.manual_seed(1)
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Use this function for plotting:
# The function for plotting 2D def Plot_2D_Plane(model, dataset, n=0): w1 = model.state_dict()['linear.weight'].numpy()[0][0] w2 = model.state_dict()['linear.weight'].numpy()[0][1] b = model.state_dict()['linear.bias'].numpy() # Data x1 = data_set.x[:, 0].view(-1, 1).numpy() x2 = data_set.x[:,...
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Make Some Data Create a dataset class with two-dimensional features:
# Create a 2D dataset class Data2D(Dataset): # Constructor def __init__(self): self.x = torch.zeros(20, 2) self.x[:, 0] = torch.arange(-1, 1, 0.1) self.x[:, 1] = torch.arange(-1, 1, 0.1) self.w = torch.tensor([[1.0], [1.0]]) self.b = 1 self.f = torch.mm(self...
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Create a dataset object:
# Create the dataset object data_set = Data2D()
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Create the Model, Optimizer, and Total Loss Function (Cost) Create a customized linear regression module:
# Create a customized linear class linear_regression(nn.Module): # Constructor def __init__(self, input_size, output_size): super(linear_regression, self).__init__() self.linear = nn.Linear(input_size, output_size) # Prediction def forward(self, x): yhat = self.lin...
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Create a model. Use two features: make the input size 2 and the output size 1:
# Create the linear regression model and print the parameters model = linear_regression(2,1) print("The parameters: ", list(model.parameters()))
The parameters: [Parameter containing: tensor([[ 0.6209, -0.1178]], requires_grad=True), Parameter containing: tensor([0.3026], requires_grad=True)]
MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Create an optimizer object. Set the learning rate to 0.1. Don't forget to enter the model parameters in the constructor.
# Create the optimizer optimizer = optim.SGD(model.parameters(), lr=0.1)
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Create the criterion function that calculates the total loss or cost:
# Create the cost function criterion = nn.MSELoss()
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Create a data loader object. Set the batch_size equal to 2:
# Create the data loader train_loader = DataLoader(dataset=data_set, batch_size=2)
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Train the Model via Mini-Batch Gradient Descent Run 100 epochs of Mini-Batch Gradient Descent and store the total loss or cost for every iteration. Remember that this is an approximation of the true total loss or cost:
# Train the model LOSS = [] print("Before Training: ") Plot_2D_Plane(model, data_set) epochs = 100 def train_model(epochs): for epoch in range(epochs): for x,y in train_loader: yhat = model(x) loss = criterion(yhat, y) LOSS.append(loss.item()) opti...
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Practice Create a new model1. Train the model with a batch size 30 and learning rate 0.1, store the loss or total cost in a list LOSS1, and plot the results.
# Practice create model1. Train the model with batch size 30 and learning rate 0.1, store the loss in a list <code>LOSS1</code>. Plot the results. data_set = Data2D()
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Double-click here for the solution.<!-- Your answer is below:train_loader = DataLoader(dataset = data_set, batch_size = 30)model1 = linear_regression(2, 1)optimizer = optim.SGD(model1.parameters(), lr = 0.1)LOSS1 = []epochs = 100def train_model(epochs): for epoch in range(epochs): for x,y in train_loader:...
torch.manual_seed(2) validation_data = Data2D() Y = validation_data.y X = validation_data.x
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MIT
IBM_AI/4_Pytorch/4.2.multiple_linear_regression_training_v2.ipynb
merula89/cousera_notebooks
Creating groupsWe are going to create a simple group.
group = Group.objects.create(name='My First Group') group.pk
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MIT
notebooks/Django Models.ipynb
warplydesigned/django_jupyter
Now lets create a group that is a child of the first group.
group_child = Group.objects.create(name='Child of (My First Group)', parent_group=group) group_child.parent_group.name
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MIT
notebooks/Django Models.ipynb
warplydesigned/django_jupyter
Creating jobsNow that we have a few groups lets create some jobs to add to the groups.
job_1 = Job.objects.create(title='Job 1') job_2 = Job.objects.create(title='Job 2')
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MIT
notebooks/Django Models.ipynb
warplydesigned/django_jupyter
Adding jobs to a group
group.jobs.add(job_1) group_child.jobs.add(job_2)
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MIT
notebooks/Django Models.ipynb
warplydesigned/django_jupyter
Ok now lets add some saved candidates to a new group
candidate_1 = SavedCandidate.objects.create(name='Candidate 1') candidate_2 = SavedCandidate.objects.create(name='Candidate 2') group_2 = Group.objects.create(name='Group 2') group_2_child = Group.objects.create(name='Group 2 Child', parent_group=group_2) group_2_child.saved_candidates.add(candidate_1) group_2_child.sa...
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MIT
notebooks/Django Models.ipynb
warplydesigned/django_jupyter
Lets loop all the groups and display there names, jobs and saved candiates for each.
for group in Group.objects.all(): print("Group: {}".format(group.name)) print("jobs: {}".format(group.jobs.count())) for job in group.jobs.all(): print(job.title) print("saved candidates: {}".format(group.saved_candidates.count())) for candidate in group.saved_candidates.all(): ...
Group: My First Group jobs: 1 Job 1 saved candidates: 0 Group: Child of (My First Group) jobs: 1 Job 2 saved candidates: 0 Group: Group 2 jobs: 0 saved candidates: 0 Group: Group 2 Child jobs: 0 saved candidates: 2 Candidate 1 Candidate 2 Group: My First Group jobs: 1 Job 1 saved candidates: 0 Group: Child of...
MIT
notebooks/Django Models.ipynb
warplydesigned/django_jupyter
Title: Alert Investigation (Windows Process Alerts)**Notebook Version:** 1.0**Python Version:** Python 3.6 (including Python 3.6 - AzureML)**Required Packages**: kqlmagic, msticpy, pandas, numpy, matplotlib, networkx, ipywidgets, ipython, scikit_learn**Platforms Supported**:- Azure Notebooks Free Compute- Azure Notebo...
import sys import warnings warnings.filterwarnings("ignore",category=DeprecationWarning) MIN_REQ_PYTHON = (3,6) if sys.version_info < MIN_REQ_PYTHON: print('Check the Kernel->Change Kernel menu and ensure that Python 3.6') print('or later is selected as the active kernel.') sys.exit("Python %s.%s or later...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Import Python Packages Get WorkspaceIdTo find your Workspace Id go to [Log Analytics](https://ms.portal.azure.com/blade/HubsExtension/Resources/resourceType/Microsoft.OperationalInsights%2Fworkspaces). Look at the workspace properties to find the ID.
# Imports import sys MIN_REQ_PYTHON = (3,6) if sys.version_info < MIN_REQ_PYTHON: print('Check the Kernel->Change Kernel menu and ensure that Python 3.6') print('or later is selected as the active kernel.') sys.exit("Python %s.%s or later is required.\n" % MIN_REQ_PYTHON) import numpy as np from IPython im...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Authenticate to Log AnalyticsIf you are using user/device authentication, run the following cell. - Click the 'Copy code to clipboard and authenticate' button.- This will pop up an Azure Active Directory authentication dialog (in a new tab or browser window). The device code will have been copied to the clipboard. - S...
if not WORKSPACE_ID or not TENANT_ID: try: WORKSPACE_ID = ws_id.value TENANT_ID = ten_id.value except NameError: raise ValueError('No workspace or Tenant Id.') mas.kql.load_kql_magic() %kql loganalytics://code().tenant(TENANT_ID).workspace(WORKSPACE_ID)
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Get Alerts ListSpecify a time range to search for alerts. One this is set run the following cell to retrieve any alerts in that time window.You can change the time range and re-run the queries until you find the alerts that you want.
alert_q_times = mas.QueryTime(units='day', max_before=20, before=5, max_after=1) alert_q_times.display() alert_counts = qry.list_alerts_counts(provs=[alert_q_times]) alert_list = qry.list_alerts(provs=[alert_q_times]) print(len(alert_counts), ' distinct alert types') print(len(alert_list), ' distinct alerts') display(H...
12 distinct alert types 51 distinct alerts
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Choose Alert to InvestigateEither pick an alert from a list of retrieved alerts or paste the SystemAlertId into the text box in the following section. Select alert from listAs you select an alert, the main properties will be shown below the list.Use the filter box to narrow down your search to any subs...
alert_select = mas.AlertSelector(alerts=alert_list, action=nbdisp.display_alert) alert_select.display()
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Or paste in an alert ID and fetch it**Skip this if you selected from the above list**
# Allow alert to be selected # Allow subscription to be selected get_alert = mas.GetSingleAlert(action=nbdisp.display_alert) get_alert.display()
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Extract properties and entities from AlertThis section extracts the alert information and entities into a SecurityAlert object allowing us to query the properties more reliably. In particular, we use the alert to automatically provide parameters for queries and UI elements.Subsequent queries will use pr...
# Extract entities and properties into a SecurityAlert class if alert_select.selected_alert is None and get_alert.selected_alert is None: sys.exit("Please select an alert before executing remaining cells.") if get_alert.selected_alert is not None: security_alert = mas.SecurityAlert(get_alert.selected_alert) el...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Entity GraphDepending on the type of alert there may be one or more entities attached as properties. Entities are things like Host, Account, IpAddress, Process, etc. - essentially the 'nouns' of security investigation. Events and alerts are the things that link them in actions so can be thought of as th...
# Draw the graph using Networkx/Matplotlib %matplotlib inline alertentity_graph = mas.create_alert_graph(security_alert) nbdisp.draw_alert_entity_graph(alertentity_graph, width=15)
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Related AlertsFor a subset of entities in the alert we can search for any alerts that have that entity in common. Currently this query looks for alerts that share the same Host, Account or Process and lists them below. **Notes:**- Some alert types do not include all of these entity types.- The original ...
# set the origin time to the time of our alert query_times = mas.QueryTime(units='day', origin_time=security_alert.TimeGenerated, max_before=28, max_after=1, before=5) query_times.display() related_alerts = qry.list_related_alerts(provs=[query_times, security_alert]) if related_alerts is n...
Found 8 different alert types related to this host ('msticalertswin1') Detected potentially suspicious use of Telegram tool, Count of alerts: 2 Detected the disabling of critical services, Count of alerts: 2 Digital currency mining related behavior detected, Count of alerts: 2 Potential attempt to bypas...
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Show these related alerts on a graphThis should indicate which entities the other alerts are related to.This can be unreadable with a lot of alerts. Use the matplotlib interactive zoom control to zoom in to part of the graph.
# Draw a graph of this (add to entity graph) %matplotlib notebook %matplotlib inline if related_alerts is not None and not related_alerts.empty: rel_alert_graph = mas.add_related_alerts(related_alerts=related_alerts, alertgraph=alertentity_graph) nbdisp.draw_alert_e...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Browse List of Related AlertsSelect an Alert to view details. If you want to investigate that alert - copy its *SystemAlertId* property and open a new instance of this notebook to investigate this alert.
def disp_full_alert(alert): global related_alert related_alert = mas.SecurityAlert(alert) nbdisp.display_alert(related_alert, show_entities=True) if related_alerts is not None and not related_alerts.empty: related_alerts['CompromisedEntity'] = related_alerts['Computer'] print('Selected alert is av...
Selected alert is available as 'related_alert' variable.
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Get Process TreeIf the alert has a process entity this section tries to retrieve the entire process tree to which that process belongs.Notes:- The alert must have a process entity- Only processes started within the query time boundary will be included- Ancestor and descented processes are retrieved to t...
# set the origin time to the time of our alert query_times = mas.QueryTime(units='minute', origin_time=security_alert.origin_time) query_times.display() from msticpy.nbtools.query_defns import DataFamily if security_alert.data_family != DataFamily.WindowsSecurity: raise ValueError('The remainder of this notebook c...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Process TimeLineThis shows each process in the process tree on a timeline view.Labelling of individual process is very performance intensive and often results in nothing being displayed at all! Besides, for large numbers of processes it would likely result in an unreadable mess. Your main tools for nego...
# Show timeline of events if process_tree is not None and not process_tree.empty: nbdisp.display_timeline(data=process_tree, alert=security_alert, title='Alert Process Session', height=250)
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Other Processes on Host - ClusteringSometimes you don't have a source process to work with. Other times it's just useful to see what else is going on on the host. This section retrieves all processes on the host within the time boundsset in the query times widget.You can display the raw output of this b...
from msticpy.sectools.eventcluster import dbcluster_events, add_process_features processes_on_host = qry.list_processes(provs=[query_times, security_alert]) if processes_on_host is not None and not processes_on_host.empty: feature_procs = add_process_features(input_frame=processes_on_host, ...
Number of input events: 190 Number of clustered events: 24
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Variability in Command Lines and Process NamesThe top chart shows the variability of command line content for a give process name. The wider the box, the more instances were found with different command line structure Note, the 'structure' in this case is measured by the number of tokens or delimiters in the command l...
# Looking at the variability of commandlines and process image paths import seaborn as sns sns.set(style="darkgrid") if processes_on_host is not None and not processes_on_host.empty: proc_plot = sns.catplot(y="processName", x="commandlineTokensFull", data=feature_procs.sort_values('pro...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
The top graph shows that, for a given process, some have a wide variability in their command line content while the majority have little or none. Looking at a couple of examples - like cmd.exe, powershell.exe, reg.exe, net.exe - we can recognize several common command line tools.The second graph shows processes by full...
if not clus_events.empty: resp = input('View the clustered data? y/n') if resp == 'y': display(clus_events.sort_values('TimeGenerated')[['TimeGenerated', 'LastEventTime', 'NewProcessName', 'CommandLine', ...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Time showing clustered vs. original data
# Show timeline of events - clustered events if not clus_events.empty: nbdisp.display_timeline(data=clus_events, overlay_data=processes_on_host, alert=security_alert, title='Distinct Host Processes (top) and All Proceses (bottom)...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Base64 Decode and Check for IOCsThis section looks for Indicators of Compromise (IoC) within the data sets passed to it.The first section looks at the commandline for the alert process (if any). It also looks for base64 encoded strings within the data - this is a common way of hiding attacker intent. It...
process = security_alert.primary_process ioc_extractor = sectools.IoCExtract() if process: # if nothing is decoded this just returns the input string unchanged base64_dec_str, _ = sectools.b64.unpack_items(input_string=process["CommandLine"]) if base64_dec_str and '<decoded' in base64_dec_str: prin...
Potential IoCs found in alert process:
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
If we have a process tree, look for IoCs in the whole data setYou can replace the data=process_tree parameter to ioc_extractor.extract() to pass other data frames.use the columns parameter to specify which column or columns that you want to search.
ioc_extractor = sectools.IoCExtract() try: if not process_tree.empty: source_processes = process_tree else: source_processes = clus_events except NameError: source_processes = None if source_processes is not None: ioc_df = ioc_extractor.extract(data=source_processes, ...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
If any Base64 encoded strings, decode and search for IoCs in the results.For simple strings the Base64 decoded output is straightforward. However for nested encodings this can get a little complex and difficult to represent in a tabular format.**Columns** - reference - The index of the row item in dotted notation in d...
if source_processes is not None: dec_df = sectools.b64.unpack_items(data=source_processes, column='CommandLine') if source_processes is not None and not dec_df.empty: display(HTML("<h3>Decoded base 64 command lines</h3>")) display(HTML("Warning - some binary patterns may be decodable as unicode strings...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Virus Total LookupThis section uses the popular Virus Total service to check any recovered IoCs against VTs database.To use this you need an API key from virus total, which you can obtain here: https://www.virustotal.com/.Note that VT throttles requests for free API keys to 4/minute. If you are unable t...
vt_key = mas.GetEnvironmentKey(env_var='VT_API_KEY', help_str='To obtain an API key sign up here https://www.virustotal.com/', prompt='Virus Total API key:') vt_key.display() if vt_key.value and ioc_df is not None and not ioc_df.empty: vt_lookup = sectools.VTLoo...
5 items in input frame Items in each category to be submitted to VirusTotal (Note: items have pre-filtering to remove obvious erroneous data and false positives, such as private IPaddresses) {'ipv4': 0, 'dns': 2, 'url': 2, 'md5_hash': 0, 'sha1_hash': 0, 'sh256_hash': 0} -------------------------------------------------...
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
To view the raw response for a specific row.```import jsonrow_idx = 0 The row number from one of the above dataframesraw_response = json.loads(pos_vt_results['RawResponse'].loc[row_idx])raw_response``` [Contents](toc) Alert command line - Occurrence on other hosts in workspaceTo get a sense of whether the alert proces...
# set the origin time to the time of our alert query_times = mas.QueryTime(units='day', before=5, max_before=20, after=1, max_after=10, origin_time=security_alert.origin_time) query_times.display() # API ILLUSTRATION - Find the query to use qry.list_queries() # AP...
No proceses with matching commandline found in on other hosts in workspace between 2019-02-08 22:04:16 and 2019-02-14 22:04:16
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Host LogonsThis section retrieves the logon events on the host in the alert.You may want to use the query times to search over a broader range than the default.
# set the origin time to the time of our alert query_times = mas.QueryTime(units='day', origin_time=security_alert.origin_time, before=1, after=0, max_before=20, max_after=1) query_times.display()
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Alert Logon AccountThe logon associated with the process in the alert.
logon_id = security_alert.get_logon_id() if logon_id: if logon_id in ['0x3e7', '0X3E7', '-1', -1]: print('Cannot retrieve single logon event for system logon id ' '- please continue with All Host Logons below.') else: logon_event = qry.get_host_logon(provs=[query_times, security_a...
### Account Logon Account: MSTICAdmin Account Domain: MSTICAlertsWin1 Logon Time: 2019-02-13 22:03:42.283000 Logon type: 4 (Batch) User Id/SID: S-1-5-21-996632719-2361334927-4038480536-500 SID S-1-5-21-996632719-2361334927-4038480536-500 is administrator SID S-1-5-21-996632719-2361334927-4038480536-500 is l...
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
All Host LogonsSince the number of logon events may be large and, in the case of system logons, very repetitive, we use clustering to try to identity logons with unique characteristics.In this case we use the numeric score of the account name and the logon type (i.e. interactive, service, etc.). The results of the clu...
from msticpy.sectools.eventcluster import dbcluster_events, add_process_features, _string_score host_logons = qry.list_host_logons(provs=[query_times, security_alert]) if host_logons is not None and not host_logons.empty: logon_features = host_logons.copy() logon_features['AccountNum'] = host_logons.apply(lamb...
### Account Logon Account: MSTICAdmin Account Domain: MSTICAlertsWin1 Logon Time: 2019-02-13 22:03:42.283000 Logon type: 4 (Batch) User Id/SID: S-1-5-21-996632719-2361334927-4038480536-500 SID S-1-5-21-996632719-2361334927-4038480536-500 is administrator SID S-1-5-21-996632719-2361334927-4038480536-500 is l...
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Comparing All Logons with Clustered results relative to Alert time line
# Show timeline of events - all logons + clustered logons if host_logons is not None and not host_logons.empty: nbdisp.display_timeline(data=host_logons, overlay_data=clus_logons, alert=security_alert, source_columns=['Account', 'LogonType'], ...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
View Process Session and Logon Events in TimelinesThis shows the timeline of the clustered logon events with the process tree obtained earlier. This allows you to get a sense of which logon was responsible for the process tree session whether any additional logons (e.g. creating a process as another user) might be ass...
# Show timeline of events - all events if host_logons is not None and not host_logons.empty: nbdisp.display_timeline(data=clus_logons, source_columns=['Account', 'LogonType'], alert=security_alert, title='Clustered Host Logons', height=200) try: ...
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Failed Logons
failedLogons = qry.list_host_logon_failures(provs=[query_times, security_alert]) if failedLogons.shape[0] == 0: display(print('No logon failures recorded for this host between {security_alert.start} and {security_alert.start}')) failedLogons
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MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
[Contents](toc) Appendices Available DataFrames
print('List of current DataFrames in Notebook') print('-' * 50) current_vars = list(locals().keys()) for var_name in current_vars: if isinstance(locals()[var_name], pd.DataFrame) and not var_name.startswith('_'): print(var_name)
List of current DataFrames in Notebook -------------------------------------------------- mydf alert_counts alert_list related_alerts process_tree processes_on_host feature_procs clus_events source_processes ioc_df dec_df ioc_dec_df vt_results pos_vt_results proc_match_in_ws logon_event host_logons logon_features clus_...
MIT
Notebooks/Sample-Notebooks/Example - Guided Investigation - Process-Alerts.ipynb
h0tp0ck3t/Sentinel
Compose and send emails> Compose and send html emails through an SMTP server using TLS.
#hide from nbdev.showdoc import * #export import smtplib from email.message import EmailMessage import mimetypes from pathlib2 import Path import re
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Apache-2.0
03_email.ipynb
eandreas/secretsanta
Complose a message
#export def create_html_message(from_address, to_addresses, subject, html, text = None, image_path = Path.cwd()): msg = EmailMessage() msg['From'] = from_address msg['To'] = to_addresses msg['Subject'] = subject if text is not None: msg.set_content(text) msg.add_alternative(html, subtype...
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Apache-2.0
03_email.ipynb
eandreas/secretsanta
Add an attachment to a message
#export def add_attachmet(msg, path): "Add an attachment with location `path` to the cunnet message `msg`." # Guess the content type based on the file's extension. Encoding # will be ignored, although we should check for simple things like # gzip'd or compressed files. ctype, encoding = mimetypes.g...
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Apache-2.0
03_email.ipynb
eandreas/secretsanta
Send a message using SMTP and TLS
#export def send_smtp_email(server, tls_port, user, pw, msg): "Send the message `msg` using the specified `server` and `port` - login using `user` and `pw`." # Create a secure SSL context try: smtp = smtplib.SMTP(server, tls_port) smtp.starttls() smtp.login(user, pw) smtp.sen...
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Apache-2.0
03_email.ipynb
eandreas/secretsanta
Examples The following is an example on how to compose and send a html-email message.
## set user and password of the smtp server #user = '' #pw = '' # ## send email from and to myself #from_email = user #to_email = '' # #html = """ #Hello, this is a test message! #<h1>Hello 22!</h1> #<img src="cid:email.jpg"> #<h1>Hello 23!</h1> #<img src="cid:iceberg.jpg"> #""" # #msg = create_html_message(from_email,...
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Apache-2.0
03_email.ipynb
eandreas/secretsanta
DQN With Prioritized Replay BufferUse prioritized replay buffer to train a DQN agent.
import random import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import utils import gym import numpy as np from gym.core import ObservationWrapper from gym.spaces import Box import cv2 import os import atari_wrappers # adjust env from framebuffer import FrameBuffer # stack 4 cons...
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Unlicense
week04_approx_rl/prioritized_replay_dqn.ipynb
hsl89/Practical_RL
PreprocessingCrop the important part of the image, then resize to 64 x 64
class PreprocessAtariObs(ObservationWrapper): def __init__(self, env): """A gym wrapper that crops, scales image into the desired shapes and grayscales it.""" ObservationWrapper.__init__(self, env) self.image_size = (1, 64, 64) self.observation_space = Box(0.0, 1.0, self.image_size)...
adjusted env with 4 consec images stacked can be created
Unlicense
week04_approx_rl/prioritized_replay_dqn.ipynb
hsl89/Practical_RL
Model
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu') def conv2d_size_out(size, kernel_size, stride): """ common use case: cur_layer_img_w = conv2d_size_out(cur_layer_img_w, kernel_size, stride) cur_layer_img_h = conv2d_size_out(cur_layer_img_h, kernel_size, stride) to understand th...
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Unlicense
week04_approx_rl/prioritized_replay_dqn.ipynb
hsl89/Practical_RL
Compute TD loss
def compute_td_loss(states, actions, rewards, next_states, is_done, agent, target_network, gamma=0.99, device=device, check_shapes=False): """ Compute td loss using torch operations only. Use the formulae above. ''' objective of agent is \hat...
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Unlicense
week04_approx_rl/prioritized_replay_dqn.ipynb
hsl89/Practical_RL
Test the memory need of the replay buffer Init DQN agent and play a total 10^4 time steps
def play_and_record(initial_state, agent, env, exp_replay, n_steps=1): """ Play the game for exactly n steps, record every (s,a,r,s', done) to replay buffer. Whenever game ends, add record with done=True and reset the game. It is guaranteed that env has done=False when passed to this function. PLE...
Starts training on cpu buffer size = 129, epsilon: 1.00000 checkpointing ...
Unlicense
week04_approx_rl/prioritized_replay_dqn.ipynb
hsl89/Practical_RL