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__Exercise 2__
import nltk from nltk.corpus import names import random names = ([(name, 'male') for name in names.words('male.txt')] + [(name, 'female') for name in names.words('female.txt')]) random.shuffle(names) test, devtest, training = names[:500], names[500:1000], names[1000:] def gender_features1(name): features = {} ...
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MIT
chapter_6_exercises.ipynb
JuliaNeumann/nltk_book_exercises
__Exercise 3)__
from nltk.corpus import senseval instances = senseval.instances('serve.pos') size = int(len(instances) * 0.1) training, test = instances[size:], instances[:size] training[0] def sense_features(instance): features = {} features["word-type"] = instance.word features["word-tag"] = instance.context[instance.pos...
0.807780320366
MIT
chapter_6_exercises.ipynb
JuliaNeumann/nltk_book_exercises
__Exercise 4)__
from nltk.corpus import movie_reviews documents = [(list(movie_reviews.words(fileid)), category) for category in movie_reviews.categories() for fileid in movie_reviews.fileids(category)] random.shuffle(documents) all_words = nltk.FreqDist(w.lower() for w in movie_reviews.words()) word_features = all_words.keys()[:2000...
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MIT
chapter_6_exercises.ipynb
JuliaNeumann/nltk_book_exercises
def isBalanced(S): stack = [] brac = {"{": "}", "[": "]", "(" : ")"} for i in S: if i in brac.keys(): stack.append(i) elif i in brac.values(): if i == brac.get(stack[-1]): stack.pop() else: stack.append(i) return "Succes...
{[} 3
Unlicense
Lab7_1.ipynb
hocthucv/bt
Table of Contents1  Figure 1: Introduction2  Figure 2: Model Performance2.1  Load KaiABC model2.1.1  Estimate Errors2.2  Plot KaiABC model with $N_{\rm eff}$3  Figure 3: Plot all data together4  Figure 4: New Model5  Supplemental Plots
import numpy as np import matplotlib.pyplot as plt from decimal import Decimal import pandas as pd import pickle from matplotlib.backends import backend_pdf as bpdf from kaic_analysis.scripts import FirstPassage, RunModel, Current, StateData, FindParam, LoadExperiment, PlotExperiment, EntropyRate from kaic_analysis.toy...
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MIT
data/Generate Plots.ipynb
robertvsiii/kaic-analysis
Figure 1: Introduction
fig,ax = plt.subplots(figsize=(3.25,1.75)) fig.subplots_adjust(left=0.17,bottom=0.25,right=0.95) code_folder = '../KMC_KaiC_rev2' data_low=RunModel(folder=code_folder,paramdict={'volume':1,'sample_cnt':1e4,'tequ':50,'rnd_seed':np.random.randint(1e6),'ATPfrac':0.45},name='data_low') data_WT=RunModel(folder=code_folder,...
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MIT
data/Generate Plots.ipynb
robertvsiii/kaic-analysis
Figure 2: Model Performance Load KaiABC model
param_name = 'ATPfrac' run_nums = list(range(1,13)) data = LoadExperiment(param_name,run_nums,date='2018-08-23',folder='kaic_data')[2] run_nums = list(range(13,22)) data.update(LoadExperiment(param_name,run_nums,date='2018-08-24',folder='kaic_data')[2]) keylist = list(data.keys()) ATPfracs = [Decimal(keylist[j].split(...
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MIT
data/Generate Plots.ipynb
robertvsiii/kaic-analysis
Estimate Errors The graphs of the bootstrap error versus number of cycles indicate that the standard deviation of the completion time increases linearly with the number of cycles. This is what we would expect to happen if each run of the experiment (making the same number of trajectories and estimating the variance fo...
with open('ModelData.dat','rb') as f: [T,D,D_err,Scyc] = pickle.load(f) DelWmin = 2000 DelWmax = 3100 DelWvec = np.exp(np.linspace(np.log(DelWmin),np.log(DelWmax),5000)) M = 180*2 Neff = 1.1 Ncoh = T/D Ncoh_err = (T/D**2)*D3_err k=0 Scyc = Scyc[:-1] Ncoh = Ncoh[:-1] Ncoh_err = Ncoh_err[:-1] fig,ax=plt.subpl...
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MIT
data/Generate Plots.ipynb
robertvsiii/kaic-analysis
Figure 3: Plot all data together Empirical curve:\begin{align}\frac{V}{\mathcal{N}} - C &= W_0 (W-W_c)^\alpha\\\frac{\mathcal{N}}{V} &= \frac{1}{C+ W_0(W-W_c)^\alpha}\end{align}
with open('ModelData.dat','rb') as f: [T,D,D_err,Scyc] = pickle.load(f) def CaoN(DelW,params = {}): N = (params['C']+params['W0']*(DelW-params['Wc'])**params['alpha'])**(-1) N[np.where(DelW<params['Wc'])[0]] = np.nan return N #For comparing experiment data: VKai = 3e13 #Convert volume to single hexame...
/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:5: RuntimeWarning: invalid value encountered in power """
MIT
data/Generate Plots.ipynb
robertvsiii/kaic-analysis
Figure 4: New Model
date = '2018-08-23' date2 = '2018-08-24' date3 = '2018-08-25' D0 = [] D0_err = [] T = [] Scyc = [] sigy =[] colors = sns.color_palette("RdBu_r",20) k = 0 for expt_number in range(3): low = 18*expt_number+1 high = 18*(expt_number+1) if expt_number == 2: #Skip simulations that failed low = 48 for ...
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MIT
data/Generate Plots.ipynb
robertvsiii/kaic-analysis
Supplemental Plots
data = [] N = 6 M = 100 C = 5 kwargs = {'tmax':4,'nsteps':1,'N':N,'M':M,'A':4.4,'C':C} out1 = SimulateClockKinetic(**kwargs) kwargs = {'tmax':4,'nsteps':1,'N':N,'M':M,'A':9.529,'C':C} out2 = SimulateClockKinetic(**kwargs) fig,ax=plt.subplots() ax.plot(out1['t'],out1['f'][:,0], label=r'$\dot{S} = 160\,k_B/{\rm hr}$') ax...
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MIT
data/Generate Plots.ipynb
robertvsiii/kaic-analysis
Note* Instructions have been included for each segment. You do not have to follow them exactly, but they are included to help you think through the steps.
# Dependencies and Setup import pandas as pd # File to Load (Remember to Change These) school_data_to_load = "Resources/schools_complete.csv" student_data_to_load = "Resources/students_complete.csv" # Read School and Student Data File and store into Pandas Data Frames school_data = pd.read_csv(school_data_to_load) st...
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ADSL
PyCitySchools/Resources/PyCitySchools_starter_unsolved.ipynb
fkokro/Pandas---Challenge
District Summary* Calculate the total number of schools* Calculate the total number of students* Calculate the total budget* Calculate the average math score * Calculate the average reading score* Calculate the overall passing rate (overall average score), i.e. (avg. math score + avg. reading score)/2* Calculate the p...
#Calculates the total number of schools arr_of_schools = school_data_complete["school_name"].unique() total_schools = len(arr_of_schools) #Calulates the number of students arr_of_students = school_data_complete["student_name"] total_students = len(arr_of_students) #Calulates the total budget for all schools arr_of_budg...
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ADSL
PyCitySchools/Resources/PyCitySchools_starter_unsolved.ipynb
fkokro/Pandas---Challenge
School Summary * Create an overview table that summarizes key metrics about each school, including: * School Name * School Type * Total Students * Total School Budget * Per Student Budget * Average Math Score * Average Reading Score * % Passing Math * % Passing Reading * Overall Passing Rate (Average of the ...
#Sets index to school name school_data_complete_name_index = school_data_complete.set_index("school_name")
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ADSL
PyCitySchools/Resources/PyCitySchools_starter_unsolved.ipynb
fkokro/Pandas---Challenge
Bottom Performing Schools (By Passing Rate) * Sort and display the five worst-performing schools
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ADSL
PyCitySchools/Resources/PyCitySchools_starter_unsolved.ipynb
fkokro/Pandas---Challenge
Math Scores by Grade * Create a table that lists the average Reading Score for students of each grade level (9th, 10th, 11th, 12th) at each school. * Create a pandas series for each grade. Hint: use a conditional statement. * Group each series by school * Combine the series into a dataframe * Optional: give ...
# Sample bins. Feel free to create your own bins. spending_bins = [0, 585, 615, 645, 675] group_names = ["<$585", "$585-615", "$615-645", "$645-675"]
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ADSL
PyCitySchools/Resources/PyCitySchools_starter_unsolved.ipynb
fkokro/Pandas---Challenge
Scores by School Size * Perform the same operations as above, based on school size.
# Sample bins. Feel free to create your own bins. size_bins = [0, 1000, 2000, 5000] group_names = ["Small (<1000)", "Medium (1000-2000)", "Large (2000-5000)"]
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ADSL
PyCitySchools/Resources/PyCitySchools_starter_unsolved.ipynb
fkokro/Pandas---Challenge
Copyright 2020 The TensorFlow Authors.
#@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under...
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
TensorFlow graph optimization with Grappler View on TensorFlow.org Run in Google Colab View source on GitHub Download notebook OverviewTensorFlow uses both graph and eager executions to execute computations. A `tf.Graph` contains a set of `tf.Operation` objects (ops) which represent units...
from __future__ import absolute_import, division, print_function, unicode_literals import numpy as np import timeit import traceback import contextlib try: %tensorflow_version 2.x except Exception: pass import tensorflow as tf
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
Create a context manager to easily toggle optimizer states.
@contextlib.contextmanager def options(options): old_opts = tf.config.optimizer.get_experimental_options() tf.config.optimizer.set_experimental_options(options) try: yield finally: tf.config.optimizer.set_experimental_options(old_opts)
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
Compare execution performance with and without GrapplerTensorFlow 2 and beyond executes [eagerly](../eager.md) by default. Use `tf.function` to switch the default execution to Graph mode. Grappler runs automatically in the background to apply the graph optimizations above and improve execution performance. Constant ...
def test_function_1(): @tf.function def simple_function(input_arg): print('Tracing!') a = tf.constant(np.random.randn(2000,2000), dtype = tf.float32) c = a for n in range(50): c = c@a return tf.reduce_mean(c+input_arg) return simple_function
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
Turn off the constant folding optimizer and execute the function:
with options({'constant_folding': False}): print(tf.config.optimizer.get_experimental_options()) simple_function = test_function_1() # Trace once x = tf.constant(2.2) simple_function(x) print("Vanilla execution:", timeit.timeit(lambda: simple_function(x), number = 1), "s")
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
Enable the constant folding optimizer and execute the function again to observe a speed-up in function execution.
with options({'constant_folding': True}): print(tf.config.optimizer.get_experimental_options()) simple_function = test_function_1() # Trace once x = tf.constant(2.2) simple_function(x) print("Constant folded execution:", timeit.timeit(lambda: simple_function(x), number = 1), "s")
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
Debug stripper optimizerConsider a simple function that checks the numeric value of its input argument and returns it.
def test_function_2(): @tf.function def simple_func(input_arg): output = input_arg tf.debugging.check_numerics(output, "Bad!") return output return simple_func
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
First, execute the function with the debug stripper optimizer turned off.
test_func = test_function_2() p1 = tf.constant(float('inf')) try: test_func(p1) except tf.errors.InvalidArgumentError as e: traceback.print_exc(limit=2)
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
`tf.debugging.check_numerics` raises an invalid argument error because of the `Inf` argument to `test_func`. Enable the debug stripper optimizer and execute the function again.
with options({'debug_stripper': True}): test_func2 = test_function_2() p1 = tf.constant(float('inf')) try: test_func2(p1) except tf.errors.InvalidArgumentError as e: traceback.print_exc(limit=2)
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Apache-2.0
site/en/guide/graph_optimization.ipynb
atharva1503/docs
Part I. ETL Pipeline for Pre-Processing the Files Import Python packages
# Import Python packages import pandas as pd import cassandra import re import os import glob import numpy as np import json import csv
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Creating list of filepaths to process original event csv data files
# checking your current working directory print(os.getcwd()) # Get your current folder and subfolder event data filepath = os.getcwd() + '/event_data' # Create a for loop to create a list of files and collect each filepath for root, dirs, files in os.walk(filepath): # join the file path and roots with the subdir...
/home/workspace
MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Processing the files to create the data file csv that will be used for Apache Casssandra tables
# initiating an empty list of rows that will be generated from each file full_data_rows_list = [] # for every filepath in the file path list for f in file_path_list: # reading csv file with open(f, 'r', encoding = 'utf8', newline='') as csvfile: # creating a csv reader object csvreade...
6821
MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
The event_datafile_new.csv now contains the following columns: - artist - firstName of user- gender of user- item number in session- last name of user- length of the song- level (paid or free song)- location of the user- sessionId- song title- userIdThe image below is a screenshot of what the denormalized data should ...
from cassandra.cluster import Cluster try: # This should make a connection to a Cassandra instance your local machine # (127.0.0.1) cluster = Cluster(['127.0.0.1']) # To establish connection and begin executing queries, need a session session = cluster.connect() except Exception as e: print(e...
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Create Keyspace
try: session.execute(""" CREATE KEYSPACE IF NOT EXISTS sparkify WITH REPLICATION = { 'class' : 'SimpleStrategy', 'replication_factor' : 1 }""") except Exception as e: print(e)
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Set Keyspace
try: session.set_keyspace('sparkify') except Exception as e: print(e)
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Part II. Time to answer important query questions Query 1. Give me the artist, song title and song's length in the music app history that was heard during sessionId = 338, and itemInSession = 4This query focuses on session history, so the table will be named accordingly.Filtering needs to be done by session_id AND ...
session_history_create = """CREATE TABLE IF NOT EXISTS session_history( session_id int, item_in_session int, artist_name text, song_title text, song_length float, PRIMARY KEY(session_id, item_in_session));""" try: session.execute(session_history_create) except Ex...
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Let's test query 1 with an example
query = """SELECT artist_name, song_title, song_length FROM session_history WHERE session_id=338 AND item_in_session=4;""" try: result = pd.DataFrame(list(session.execute(query))) print(result.to_string()) except Exception as e: print(e)
artist_name song_title song_length 0 Faithless Music Matters (Mark Knight Dub) 495.307312
MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Query 2. Give me only the following: name of artist, song (sorted by itemInSession) and user (first and last name) for userid = 10, sessionid = 182This query focuses on specific user session history. We will be retrieving specific listening details by user_id and session_id. To support query, user_id, session_id and i...
user_session_history_create = """ CREATE TABLE IF NOT EXISTS user_session_history( user_id int, session_id int, item_in_session int, artist_name text, song_title text, user_first_name text, user_last_name text, PRIMARY KEY(user_id, session_id, item_...
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Let's test query 2 with an example
query = """SELECT artist_name, song_title, user_first_name, user_last_name FROM user_session_history WHERE user_id=10 AND session_id=182;""" try: result = pd.DataFrame(list(session.execute(query))) print(result.to_string()) except Exception as e: print(e)
artist_name song_title user_first_name user_last_name 0 Down To The Bone Keep On Keepin' On Sylvie Cruz 1 Three Drives Greece 2000 Sylvie Cruz 2 Sebastie...
MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Query 3. Give me every user name (first and last) in my music app history who listened to the song 'All Hands Against His Own'This query focuses on song history, highlighting which songs are being listened to by which users. We will be retrieving specific listening details by song_title. To support query, song_title a...
song_user_history_create = """ CREATE TABLE IF NOT EXISTS song_user_history( user_id int, song_title text, user_first_name text, user_last_name text, PRIMARY KEY(song_title, user_id));""" try: session.execute(song_user_history_create) except Exception as e: print(e)...
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Let's test query 3 with an example
query = """SELECT user_first_name, user_last_name FROM song_user_history WHERE song_title='All Hands Against His Own';""" try: result = pd.DataFrame(list(session.execute(query))) print(result.to_string()) except Exception as e: print(e)
user_first_name user_last_name 0 Jacqueline Lynch 1 Tegan Levine 2 Sara Johnson
MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Dropping the tables before closing out the sessions
drop_session_history = "DROP TABLE IF EXISTS session_history;" session.execute(drop_session_history) drop_user_session_history = "DROP TABLE IF EXISTS user_session_history;" session.execute(drop_user_session_history) drop_song_user_history = "DROP TABLE IF EXISTS song_user_history;" session.execute(drop_song_user_histo...
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Don't forget to close the session and cluster connection¶
session.shutdown() cluster.shutdown()
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MIT
sparkify_cassandra_project.ipynb
iamfeniak/sparkify-etl-pipeline-cassandra
Welcome! In finance momentum refers to the phenomenon of cross-sectional predictability of returns by past price data. A standard example would be the well documented tendency of stocks that have had high returns over the past one to twelve months to continue outperform stocks that have performed poorly over the same p...
import csv import random import matplotlib.pyplot as plt import numpy as np import scipy.stats as statfunc import pandas as pd import plotly.graph_objs as go import mplfinance as mpf from sklearn import mixture as mix import seaborn as sns from pandas_datareader import data as web df= web.get_data_yahoo('RELIANCE.NS',...
Mean for regime 0: 10784.766638714711 Co-Variancefor regime 0: 36141.444765725864 Mean for regime 1: 12047.572769668644 Co-Variancefor regime 1: 23143.320584827794 Mean for regime 2: 9447.270093875897 Co-Variancefor regime 2: 453141.17885501473 Mean for regime 3: 11509.5640340791 Co-Variancefor regime 3: 30112....
MIT
FinanceProjectMain.ipynb
AmaaniGoose/FinanceProject
Version 2: Using technical indicators
print(df) def RSI(df, base="Close", period=21): """ Function to compute Relative Strength Index (RSI) Args : df : Pandas DataFrame which contains ['date', 'open', 'high', 'low', 'close', 'volume'] columns base : String indicating the column name from which the MACD needs to be computed ...
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MIT
FinanceProjectMain.ipynb
AmaaniGoose/FinanceProject
Objectives* Consider only two features of the dataset obtained after t-sne* Find out best performing value of perplexity for t-sne using cross-validation* Use linear model with no calibration vs non linear model to see how well these perform
def get_training_set(train): X = train[train.columns.drop('Activity')] y = train.Activity return X, y X, y = get_training_set(train) Xtest = test X_train, X_test, y_train, y_test = train_test_split(X, y, stratify=y, test_size=0.3, random_state=44)
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MIT
Kaggle-Competitions/Predict-Bio-Response/Predict-Bio-Response-Model-Building.ipynb
gopala-kr/ds-notebooks
Cross validation
def get_cross_val_scores_by_perplexity(X, y, clf): skf = StratifiedKFold(y, n_folds=3, shuffle=True, random_state=43) perplexity = [50, 75, 100] errors = [] for p in perplexity: tsne = TSNE(n_components=2, perplexity=p) Xhat = tsne.fit_transform(X) cv_scores = cross...
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MIT
Kaggle-Competitions/Predict-Bio-Response/Predict-Bio-Response-Model-Building.ipynb
gopala-kr/ds-notebooks
Old way - csv
#js = json.load(open('ref_1554219251.json')) #csv = open('ref_1554219251.csv').read() csv = open('ref_1558361146.csv').read() csv_data = [] for rec in [x.strip() for x in csv.split("\n")]: p = rec.split(';') if len(p) < 6: continue cur = collections.OrderedDict([ ('method', p[0]), ...
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MIT
bool-pvalues.ipynb
sobuch/polynomial-distinguishers
pvalues - pvalue = probability (in the null hypothesis distribution) to be observed as a value equal to or more extreme than the value observed computation - Derive CDF -> find 0 regions = extremes - Integrate from 0 regions towards region of increasing integral value. - Once sum of all integrations is alpha, stop....
np.arange(-1, 1, 1/20.) counter = [0] * 8 MAXV = 2 def inc(counter): global MAXV ln = len(counter) - 1 while ln >= 0: counter[ln] = (counter[ln] + 1) % MAXV if (counter[ln] != 0): return(counter) ln-=1 raise ValueError('Overflow') def dec(counter): global M...
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MIT
bool-pvalues.ipynb
sobuch/polynomial-distinguishers
GradCAM (Gradient class activation mappinng)这个版本主要用来了解制作Grad_Cam的过程,并没有特意封装每行代码几乎都有注解---CNN卷积一直都是一个神秘的过程过去一直被以黑盒来形容能够窥探CNN是一件很有趣的事情, 特别是还能够帮助我们在进行一些任务的时候了解模型判别目标物的过程是不是出了什么问题而Grad-CAM就是一个很好的可视化选择因为能够生成高分辨率的图并叠加在原图上, 让我们在研究一些模型判别错误的时候, 有个更直观的了解那么具体是如何生成Grad CAM的呢?老规矩先上图, 说明流程一定要配图![在这里插入图片描述](https://img-blog.csdnimg.c...
import torch as t from torchvision import models import cv2 import sys import numpy as np import matplotlib.pyplot as plt class FeatureExtractor(): """ 1. 提取目标层特征 2. register 目标层梯度 """ def __init__(self, model, target_layers): self.model = model self.model_features = model.features ...
/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/ipykernel_launcher.py:47: UserWarning: To copy construct from a tensor, it is recommended to use sourceTensor.clone().detach() or sourceTensor.clone().detach().requires_grad_(True), rather than torch.tensor(sourceTensor).
OML
PaddleCare/Deep_learning/Grad_CAM_Pytorch-1.01-Stephenfang51-patch-1/Grad_CAM_Pytorch_1_tutorialv2.ipynb
momozi1996/Medical_AI_analysis
1 ~ 9 (NO transistor)
GPIO.output(Pin.A.value, GPIO.LOW) GPIO.output(Pin.B.value, GPIO.LOW) GPIO.output(Pin.C.value,GPIO.LOW) GPIO.output(Pin.D.value, GPIO.LOW) GPIO.output(Pin.A.value,GPIO.HIGH) GPIO.output(Pin.B.value,GPIO.LOW) GPIO.output(Pin.C.value,GPIO.LOW) GPIO.output(Pin.D.value, GPIO.LOW) GPIO.output(Pin.A.value,GPIO.LOW) GPIO.outp...
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MIT
nixie/nixie.ipynb
tanico-rikudo/raspi4
(experimental) Channels Last Memory Format in PyTorch*********************************************************Author**: `Vitaly Fedyunin `_What is Channels Last---------------------Channels Last memory format is an alternative way of ordering NCHW tensors in memory preserving dimensions ordering. Channels Last tensors ...
import torch N, C, H, W = 10, 3, 32, 32
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Memory Format API-----------------------Here is how to convert tensors between contiguous and channels last memory formats. Classic PyTorch contiguous tensor
x = torch.empty(N, C, H, W) print(x.stride()) # Ouputs: (3072, 1024, 32, 1)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Conversion operator
x = x.contiguous(memory_format=torch.channels_last) print(x.shape) # Outputs: (10, 3, 32, 32) as dimensions order preserved print(x.stride()) # Outputs: (3072, 1, 96, 3)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Back to contiguous
x = x.contiguous(memory_format=torch.contiguous_format) print(x.stride()) # Outputs: (3072, 1024, 32, 1)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Alternative option
x = x.to(memory_format=torch.channels_last) print(x.stride()) # Ouputs: (3072, 1, 96, 3)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Format checks
print(x.is_contiguous(memory_format=torch.channels_last)) # Ouputs: True
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Create as Channels Last
x = torch.empty(N, C, H, W, memory_format=torch.channels_last) print(x.stride()) # Ouputs: (3072, 1, 96, 3)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
``clone`` preserves memory format
y = x.clone() print(y.stride()) # Ouputs: (3072, 1, 96, 3)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
``to``, ``cuda``, ``float`` ... preserves memory format
if torch.cuda.is_available(): y = x.cuda() print(y.stride()) # Ouputs: (3072, 1, 96, 3)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
``empty_like``, ``*_like`` operators preserves memory format
y = torch.empty_like(x) print(y.stride()) # Ouputs: (3072, 1, 96, 3)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Pointwise operators preserves memory format
z = x + y print(z.stride()) # Ouputs: (3072, 1, 96, 3)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Conv, Batchnorm modules support Channels Last(only works for CudNN >= 7.6)
if torch.backends.cudnn.version() >= 7603: input = torch.randint(1, 10, (2, 8, 4, 4), dtype=torch.float32, device="cuda", requires_grad=True) model = torch.nn.Conv2d(8, 4, 3).cuda().float() input = input.contiguous(memory_format=torch.channels_last) model = model.to(memory_format=torch.channels_last) #...
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Performance Gains-------------------------------------------------------------------------------------------The most significant performance gains are observed on NVidia's hardware with Tensor Cores support. We were able to archive over 22% perf gains while running 'AMP (Automated Mixed Precision) training scripts sup...
# opt_level = O2 # keep_batchnorm_fp32 = None <class 'NoneType'> # loss_scale = None <class 'NoneType'> # CUDNN VERSION: 7603 # => creating model 'resnet50' # Selected optimization level O2: FP16 training with FP32 batchnorm and FP32 master weights. # Defaults for this optimization level are: # enabled ...
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Passing ``--channels-last true`` allows running a model in Channels Last format with observed 22% perf gain.``python main_amp.py -a resnet50 --b 200 --workers 16 --opt-level O2 --channels-last true ./data``
# opt_level = O2 # keep_batchnorm_fp32 = None <class 'NoneType'> # loss_scale = None <class 'NoneType'> # # CUDNN VERSION: 7603 # # => creating model 'resnet50' # Selected optimization level O2: FP16 training with FP32 batchnorm and FP32 master weights. # # Defaults for this optimization level are: # enabled ...
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
The following list of models has the full support of Channels Last and showing 8%-35% perf gains on Volta devices:``alexnet``, ``mnasnet0_5``, ``mnasnet0_75``, ``mnasnet1_0``, ``mnasnet1_3``, ``mobilenet_v2``, ``resnet101``, ``resnet152``, ``resnet18``, ``resnet34``, ``resnet50``, ``resnext50_32x4d``, ``shufflenet_v2_x...
# Need to be done once, after model initialization (or load) model = model.to(memory_format=torch.channels_last) # Replace with your model # Need to be done for every input input = input.to(memory_format=torch.channels_last) # Replace with your input output = model(input)
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
However, not all operators fully converted to support Channels Last (usually returning contiguous output instead). That means you need to verify the list of used operators against supported operators list https://github.com/pytorch/pytorch/wiki/Operators-with-Channels-Last-support, or introduce memory format checks int...
def contains_cl(args): for t in args: if isinstance(t, torch.Tensor): if t.is_contiguous(memory_format=torch.channels_last) and not t.is_contiguous(): return True elif isinstance(t, list) or isinstance(t, tuple): if contains_cl(list(t)): return...
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BSD-3-Clause
docs/_downloads/f11c58c36c9b8a5daf09d3f9a792ef84/memory_format_tutorial.ipynb
creduo/PyTorch-tutorials-kr
Live in Lab**Neuro Video Series****By Neuromatch Academy****Content creators**: Anne Churchland, Chaoqun Yin, Alex Kostiuk, Lukas Oesch,Michael Ryan, Ashley Chen, Joao Couto**Content reviewers**: Tara van Viegen, Oluwatomisin Faniyan, Pooya Pakarian, Sirisha Sripada**Video editors, captioners, and translators**: Jere...
# @markdown from ipywidgets import widgets out2 = widgets.Output() with out2: from IPython.display import IFrame class BiliVideo(IFrame): def __init__(self, id, page=1, width=400, height=300, **kwargs): self.id=id src = "https://player.bilibili.com/player.html?bvid={0}&page={1}".format(id...
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CC-BY-4.0
tutorials/W0D0_NeuroVideoSeries/student/W0D0_Tutorial4.ipynb
janeite/course-content
**Chapter 2 – End-to-end Machine Learning project***Welcome to Machine Learning Housing Corp.! Your task is to predict median house values in Californian districts, given a number of features from these districts.**This notebook contains all the sample code and solutions to the exercices in chapter 2.* Setup First, le...
# Python ≥3.5 is required import sys assert sys.version_info >= (3, 5) # Scikit-Learn ≥0.20 is required import sklearn assert sklearn.__version__ >= "0.20" # Common imports import numpy as np import os # To plot pretty figures %matplotlib inline import matplotlib as mpl import matplotlib.pyplot as plt mpl.rc('axes',...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Get the data
import os import tarfile import urllib DOWNLOAD_ROOT = "https://raw.githubusercontent.com/ageron/handson-ml2/master/" HOUSING_PATH = os.path.join("datasets", "housing") HOUSING_URL = DOWNLOAD_ROOT + "datasets/housing/housing.tgz" def fetch_housing_data(housing_url=HOUSING_URL, housing_path=HOUSING_PATH): if not o...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
The implementation of `test_set_check()` above works fine in both Python 2 and Python 3. In earlier releases, the following implementation was proposed, which supported any hash function, but was much slower and did not support Python 2:
import hashlib def test_set_check(identifier, test_ratio, hash=hashlib.md5): return hash(np.int64(identifier)).digest()[-1] < 256 * test_ratio
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
If you want an implementation that supports any hash function and is compatible with both Python 2 and Python 3, here is one:
def test_set_check(identifier, test_ratio, hash=hashlib.md5): return bytearray(hash(np.int64(identifier)).digest())[-1] < 256 * test_ratio housing_with_id = housing.reset_index() # adds an `index` column train_set, test_set = split_train_test_by_id(housing_with_id, 0.2, "index") housing_with_id["id"] = housing["l...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Discover and visualize the data to gain insights
housing = strat_train_set.copy() housing.plot(kind="scatter", x="longitude", y="latitude") save_fig("bad_visualization_plot") housing.plot(kind="scatter", x="longitude", y="latitude", alpha=0.1) save_fig("better_visualization_plot")
Saving figure better_visualization_plot
Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
The argument `sharex=False` fixes a display bug (the x-axis values and legend were not displayed). This is a temporary fix (see: https://github.com/pandas-dev/pandas/issues/10611 ). Thanks to Wilmer Arellano for pointing it out.
housing.plot(kind="scatter", x="longitude", y="latitude", alpha=0.4, s=housing["population"]/100, label="population", figsize=(10,7), c="median_house_value", cmap=plt.get_cmap("jet"), colorbar=True, sharex=False) plt.legend() save_fig("housing_prices_scatterplot") import matplotlib.image as mpimg california...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Prepare the data for Machine Learning algorithms
housing = strat_train_set.drop("median_house_value", axis=1) # drop labels for training set housing_labels = strat_train_set["median_house_value"].copy() sample_incomplete_rows = housing[housing.isnull().any(axis=1)].head() sample_incomplete_rows sample_incomplete_rows.dropna(subset=["total_bedrooms"]) # option 1 sa...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Remove the text attribute because median can only be calculated on numerical attributes:
housing_num = housing.drop("ocean_proximity", axis=1) # alternatively: housing_num = housing.select_dtypes(include=[np.number]) imputer.fit(housing_num) imputer.statistics_
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Check that this is the same as manually computing the median of each attribute:
housing_num.median().values
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Transform the training set:
X = imputer.transform(housing_num) housing_tr = pd.DataFrame(X, columns=housing_num.columns, index=housing.index) housing_tr.loc[sample_incomplete_rows.index.values] imputer.strategy housing_tr = pd.DataFrame(X, columns=housing_num.columns, index=housing_num.index) ho...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Now let's preprocess the categorical input feature, `ocean_proximity`:
housing_cat = housing[["ocean_proximity"]] housing_cat.head(10) from sklearn.preprocessing import OrdinalEncoder ordinal_encoder = OrdinalEncoder() housing_cat_encoded = ordinal_encoder.fit_transform(housing_cat) housing_cat_encoded[:10] ordinal_encoder.categories_ from sklearn.preprocessing import OneHotEncoder cat_...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
By default, the `OneHotEncoder` class returns a sparse array, but we can convert it to a dense array if needed by calling the `toarray()` method:
housing_cat_1hot.toarray()
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Alternatively, you can set `sparse=False` when creating the `OneHotEncoder`:
cat_encoder = OneHotEncoder(sparse=False) housing_cat_1hot = cat_encoder.fit_transform(housing_cat) housing_cat_1hot cat_encoder.categories_
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Let's create a custom transformer to add extra attributes:
from sklearn.base import BaseEstimator, TransformerMixin # column index rooms_ix, bedrooms_ix, population_ix, households_ix = 3, 4, 5, 6 class CombinedAttributesAdder(BaseEstimator, TransformerMixin): def __init__(self, add_bedrooms_per_room = True): # no *args or **kargs self.add_bedrooms_per_room = add_...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Now let's build a pipeline for preprocessing the numerical attributes:
from sklearn.pipeline import Pipeline from sklearn.preprocessing import StandardScaler num_pipeline = Pipeline([ ('imputer', SimpleImputer(strategy="median")), ('attribs_adder', CombinedAttributesAdder()), ('std_scaler', StandardScaler()), ]) housing_num_tr = num_pipeline.fit_transform(hou...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
For reference, here is the old solution based on a `DataFrameSelector` transformer (to just select a subset of the Pandas `DataFrame` columns), and a `FeatureUnion`:
from sklearn.base import BaseEstimator, TransformerMixin # Create a class to select numerical or categorical columns class OldDataFrameSelector(BaseEstimator, TransformerMixin): def __init__(self, attribute_names): self.attribute_names = attribute_names def fit(self, X, y=None): return self ...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Now let's join all these components into a big pipeline that will preprocess both the numerical and the categorical features:
num_attribs = list(housing_num) cat_attribs = ["ocean_proximity"] old_num_pipeline = Pipeline([ ('selector', OldDataFrameSelector(num_attribs)), ('imputer', SimpleImputer(strategy="median")), ('attribs_adder', CombinedAttributesAdder()), ('std_scaler', StandardScaler()), ]) old_cat...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
The result is the same as with the `ColumnTransformer`:
np.allclose(housing_prepared, old_housing_prepared)
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Select and train a model
from sklearn.linear_model import LinearRegression lin_reg = LinearRegression() lin_reg.fit(housing_prepared, housing_labels) # let's try the full preprocessing pipeline on a few training instances some_data = housing.iloc[:5] some_labels = housing_labels.iloc[:5] some_data_prepared = full_pipeline.transform(some_data)...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Compare against the actual values:
print("Labels:", list(some_labels)) some_data_prepared from sklearn.metrics import mean_squared_error housing_predictions = lin_reg.predict(housing_prepared) lin_mse = mean_squared_error(housing_labels, housing_predictions) lin_rmse = np.sqrt(lin_mse) lin_rmse from sklearn.metrics import mean_absolute_error lin_mae =...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Fine-tune your model
from sklearn.model_selection import cross_val_score scores = cross_val_score(tree_reg, housing_prepared, housing_labels, scoring="neg_mean_squared_error", cv=10) tree_rmse_scores = np.sqrt(-scores) def display_scores(scores): print("Scores:", scores) print("Mean:", scores.mean()) p...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
**Note**: we specify `n_estimators=100` to be future-proof since the default value is going to change to 100 in Scikit-Learn 0.22 (for simplicity, this is not shown in the book).
from sklearn.ensemble import RandomForestRegressor forest_reg = RandomForestRegressor(n_estimators=100, random_state=42) forest_reg.fit(housing_prepared, housing_labels) housing_predictions = forest_reg.predict(housing_prepared) forest_mse = mean_squared_error(housing_labels, housing_predictions) forest_rmse = np.sqrt...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
The best hyperparameter combination found:
grid_search.best_params_ grid_search.best_estimator_
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Let's look at the score of each hyperparameter combination tested during the grid search:
cvres = grid_search.cv_results_ for mean_score, params in zip(cvres["mean_test_score"], cvres["params"]): print(np.sqrt(-mean_score), params) pd.DataFrame(grid_search.cv_results_) from sklearn.model_selection import RandomizedSearchCV from scipy.stats import randint param_distribs = { 'n_estimators': randi...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
We can compute a 95% confidence interval for the test RMSE:
from scipy import stats confidence = 0.95 squared_errors = (final_predictions - y_test) ** 2 np.sqrt(stats.t.interval(confidence, len(squared_errors) - 1, loc=squared_errors.mean(), scale=stats.sem(squared_errors)))
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
We could compute the interval manually like this:
m = len(squared_errors) mean = squared_errors.mean() tscore = stats.t.ppf((1 + confidence) / 2, df=m - 1) tmargin = tscore * squared_errors.std(ddof=1) / np.sqrt(m) np.sqrt(mean - tmargin), np.sqrt(mean + tmargin)
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Alternatively, we could use a z-scores rather than t-scores:
zscore = stats.norm.ppf((1 + confidence) / 2) zmargin = zscore * squared_errors.std(ddof=1) / np.sqrt(m) np.sqrt(mean - zmargin), np.sqrt(mean + zmargin)
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Extra material A full pipeline with both preparation and prediction
full_pipeline_with_predictor = Pipeline([ ("preparation", full_pipeline), ("linear", LinearRegression()) ]) full_pipeline_with_predictor.fit(housing, housing_labels) full_pipeline_with_predictor.predict(some_data)
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Model persistence using joblib
my_model = full_pipeline_with_predictor import joblib joblib.dump(my_model, "my_model.pkl") # DIFF #... my_model_loaded = joblib.load("my_model.pkl") # DIFF
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Example SciPy distributions for `RandomizedSearchCV`
from scipy.stats import geom, expon geom_distrib=geom(0.5).rvs(10000, random_state=42) expon_distrib=expon(scale=1).rvs(10000, random_state=42) plt.hist(geom_distrib, bins=50) plt.show() plt.hist(expon_distrib, bins=50) plt.show()
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
Exercise solutions 1. Question: Try a Support Vector Machine regressor (`sklearn.svm.SVR`), with various hyperparameters such as `kernel="linear"` (with various values for the `C` hyperparameter) or `kernel="rbf"` (with various values for the `C` and `gamma` hyperparameters). Don't worry about what these hyperparamet...
from sklearn.model_selection import GridSearchCV param_grid = [ {'kernel': ['linear'], 'C': [10., 30., 100., 300., 1000., 3000., 10000., 30000.0]}, {'kernel': ['rbf'], 'C': [1.0, 3.0, 10., 30., 100., 300., 1000.0], 'gamma': [0.01, 0.03, 0.1, 0.3, 1.0, 3.0]}, ] svm_reg = SVR() grid_search ...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
The best model achieves the following score (evaluated using 5-fold cross validation):
negative_mse = grid_search.best_score_ rmse = np.sqrt(-negative_mse) rmse
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
That's much worse than the `RandomForestRegressor`. Let's check the best hyperparameters found:
grid_search.best_params_
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
The linear kernel seems better than the RBF kernel. Notice that the value of `C` is the maximum tested value. When this happens you definitely want to launch the grid search again with higher values for `C` (removing the smallest values), because it is likely that higher values of `C` will be better. 2. Question: Try ...
from sklearn.model_selection import RandomizedSearchCV from scipy.stats import expon, reciprocal # see https://docs.scipy.org/doc/scipy/reference/stats.html # for `expon()` and `reciprocal()` documentation and more probability distribution functions. # Note: gamma is ignored when kernel is "linear" param_distribs = {...
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2
The best model achieves the following score (evaluated using 5-fold cross validation):
negative_mse = rnd_search.best_score_ rmse = np.sqrt(-negative_mse) rmse
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Apache-2.0
02_end_to_end_machine_learning_project.ipynb
Ruqyai/handson-ml2