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import re def camel2snake(txt: str) -> str: """Convert a CamelCasedString to a snake_cased_string""" txt = re.sub("(.)([A-Z][a-z]+)", r"\1_\2", txt) txt = re.sub("__([A-Z])", r"_\1", txt) txt = re.sub("([a-z0-9])([A-Z])", r"\1_\2", txt) return txt.lower()
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def get_glyph(entity_type): """ Generates appropriate Font Awesome icon strings based on entity type strings, such as a person icon (fa-male) for the 'person' entity, etc. :param entity_type: String specifying the entity type to be visualized :return: HTML string with the corresponding Font Awesome icon """ if ...
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def _validate_float(s, accept_none = False): """ A validation method to convert input s to float or raise error if it is not convertable """ if s is None and accept_none : return None try: return float(s) except ValueError: raise ValueError('Could not convert "%s" to float' % s)
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import json def read_alias_mapping(file_path): """Read and transform agent alias listing from a .json file.""" if not file_path: return {} with open(file_path, "r") as mapping: data = mapping.read() obj = json.loads(data) aliases = {v: k for k, vs in obj.items() for v in vs} ...
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import torch def batch_mvp(m, v): """Batched matrix vector product. Args: m: A tensor of size (batch_size, d, m). v: A tensor of size (batch_size, m). Returns: A tensor of size (batch_size, d). """ v = v.unsqueeze(dim=-1) # (batch_size, m, 1) mvp = torch.bmm(m, v) #...
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def ToUnixLineEnding(s): """Changes all Windows/Mac line endings in s to UNIX line endings.""" return s.replace('\r\n', '\n').replace('\r', '\n')
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def get_concat_peptide(front_coord_pair, back_coord_pair, front_peptide, back_peptide, strand, k=None): """ Get the concatenated peptide from possible match peptide. Parameters ---------- front_coord_pair: str. coordinate string for the front exon pair. back_coord_pair: str. coordinate string fo...
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def ezip(e, l): """ Zips an element on the left side of a collection. Examples -------- Let us define a list `l`: >>> l = [0, 1, 2] Let us zip an element 'id' for each element of the l. >>> ezip('id', l) [('id', 0), ('id', 1), ('id', 2)] """ return map(lambda x: (e, x), l)
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import json def writeJson(file_name, data): """ Writes given dict data to given file_name as json. Args: file_name (string): Path to write data to. data (dict): dict to write to given file_name. Returns: (string): full path where json file is. """ with open(file_name...
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def potential_temperature( temp, press, gas_constant=287.058, c_p=1039, p_ref=100_000, ): """ Calculate potential temperature ---------- temp : xarray.DataArray Atmospheric temperature [K]. press : xarray.DataArray Atmospheric pressure [Pa]. gas_constant : flo...
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def filtdict(d, *keys): """ Keep dict items with the given keys filtdict({"a": 1, "b": 2}, "b") {'b': 2} """ return type(d)(i for i in d.items() if i[0] in keys)
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def UniqueElements(x: list) -> list: """Returns unique elements of a list (not order preserving).""" keys = {} for e in x: keys[e] = 1 return list(keys.keys())
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def set_phone_silent_mode(log, ad, silent_mode=True): """Set phone silent mode. Args: log: Log object. ad: Android device object. silent_mode: set phone silent or not. This is optional, default value is True (silent mode on). Returns: True if set successfully. ...
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def pronoun_instance_dist(novel, words): """ Takes in a novel and list of gender pronouns, returns a list of distances between each instance of a pronoun in that novel >>> from gender_novels import novel >>> summary = "James was his convicted of adultery. " >>> summary += "wh...
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import pickle def encode_message(topic, data): """Encode a message for sending via 0MQ Given a string topic name and a pickle-able data object, encode and prep the data for sending via `send_multipart` Returns a list of the form: [ Bytes object of String (UTF-8), Pick...
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import math def ER_Theory(N,Kappa) : """ Apprixmate expression for the mean algerbaic connectivity of ER graphs. This formula is presented in: Jamakovic, A., and Piet Van Mieghem. "On the robustness of complex networks by using the algebraic connectivity." NETWORKING 2008 Ad Hoc and Sensor Networks, Wireles...
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def train_test_split(dataset, start, end): """Reserve dataset.examples[start:end] for test; train on the remainder.""" start = int(start) end = int(end) examples = dataset.examples train = examples[:start] + examples[end:] val = examples[start:end] return train, val
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def _handle_validation_error(exc, context, response): """Generic error for 'ValidationError' exception.""" response.data = { "error": "ValidationError", "message": "Отправленные данные не прошли проверку", "details": response.data, } return response
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def align(vaddr, page_size=4096): """page align an address""" slack = vaddr % page_size pad = page_size - slack aligned_vaddr = vaddr + pad return aligned_vaddr
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def pipefunc(db, keys, funcname, *args, **kw): """Runs a pipeline with the given funcname on each given key. This function is equivalent to: [db.funcname(k, *args, **kw) for k in keys] """ p = db.pipeline() func = getattr(p, funcname) [func(k, *args, **kw) for k in keys] return p.exe...
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def _get_node(view, f, *arg): """ Find etree node for the field ``f`` in the view's arch """ return next(( n for n in view['tree'].iter('field') if n.get('name') == f ), *arg)
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def size_to_str(size): """Converts a size, given in bytes length, to a string representation""" sizes = ['bytes', 'KiB', 'MiB', 'GiB', 'TiB'] pos = 0 while size >= 1024: size /= 1024 pos += 1 return '{:.2f} {}'.format(size, sizes[pos])
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def _named(pattern, name): """Wraps a regex pattern in a named capture group""" return f'(?P<{name}>{pattern})'
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import yaml def load_config(filename="config.yaml"): """Load a .yml config file as a dictionary and return it.""" with open(filename, "r") as f_in: return yaml.safe_load(f_in)
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import pathlib import shutil def copy_test_files(dest, source=None): """ copy test images to temp directory, returns list of files copied """ if source is None: source = pathlib.Path("tests/test_images") else: source = pathlib.Path(source) files_copied = [] for source_file in ...
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def _shape_equal(shape1, shape2): """ Check if shape of stream are compatible. More or less shape1==shape2 but deal with: * shape can be list or tuple * shape can have one dim with -1 """ shape1 = list(shape1) shape2 = list(shape2) if len(shape1) != len(shape2): return Fa...
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def _pooling_output_shape( input_size, kernel_size, pad_l, pad_r, stride, dilation, ceil_mode ): """ Generates output shape along a single dimension following conventions here: https://github.com/pytorch/pytorch/blob/b0424a895c878cb865947164cb0ce9ce3c2e73ef/aten/src/ATen/native/Pool.h#L24-L38 """ ...
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from typing import List from typing import Dict from typing import Optional def _payload(projects: List[str], identities: List[Dict], priority: int, id: Optional[str], resource_types: Optional[List[str]]) -> Dict: """Create a cross-project resolver payload. :param projects: List of target projec...
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import warnings def duration_in_dt(duration_in_sec: float, dt_in_sec: float) -> int: """ Return duration in dt. Args: duration_in_sec: duration [s] to be converted. dt_in_sec: duration of dt in seconds used for conversion. Returns: Duration in dt. """ res = round(dura...
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def message_to_oscsysexpayload(message): """Convert a sysex message into an OSC payload string. """ return message.hex().replace(' ', '')
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def get_location_from_shapefile_record_name(shapefile_record_names_df, record_name): """ Get location for the shapefile record name given. Args: shapefile_record_names_df (pandas DataFrame) : dataframe of shapefile record names and the associated locations location (str) ...
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def get_extension(name): """Returns the full extension for a given file. Example: 'mytar.tar.gz' -> '.tar.gz' """ tmp=name.split('.') ext="" for s in tmp[1:]: ext += "."+s return ext
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def pandas_to_unique_df(idf,columns = 'source_ID', otype = 'list'): """ Take a dataframe, return a list or dictionary of dataframes from the uniques values of one of its colums. Can be useful to plot basins_river more easily, I already needed it in some cases, I don't really remember why! Bu...
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from typing import Union from typing import Iterable def wrap_scalar_value_in_list(value: Union[Iterable, int, str]) -> Iterable: """If a string or integer is passed, wrap it in a list.""" if isinstance(value, (int, str)): return [value] else: return value
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def transformNull(requestContext, seriesList, default=0): """ Takes a metric or wild card seriesList and an optional value to transform Nulls to. Default is 0. This method compliments drawNullAsZero flag in graphical mode but also works in text only mode. Example: .. code-block:: none &target=transf...
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def _intersect_cut(shape, cutting_shape): """ intersect by cutting, so that the cutting shape defines a part of the shape which is inside and a part which is outside as two separate shapes. """ inside = shape.intersection(cutting_shape) outside = shape.difference(cutting_shape) return in...
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def print_metric(inp_dict, title=" ", verbose=True): """Prints metrics from dictionary""" msg = "" msg += f"\n\n{title}" + "<br />" if verbose: print(f"\n\n{title}") for k_method, v_method in inp_dict.items(): msg += "<br />" msg += f"{k_method}" + "<br />" msg += "-"...
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def create_mask_from_window(x): """ Creates a mask from an input matrix x, to identify the max entry of x. Arguments: x -- Array of shape (f, f) Returns: mask -- Array of the same shape as window, contains a True at the position corresponding to the max entry of x. """ ### START CODE ...
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def subset_or_none(dict1: dict, dict2: dict) -> dict: """ If the keys of dict2 are a subset of the keys of dict1, return a copy of dict1 updated with the values of dict2, otherwise return an empty dict of the same type as dict1 """ new_dict = dict1.copy() new_dict.update(dict2) if new_di...
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from pathlib import Path def filename_for_plot(directory, zarr_path: str, qualifier: str = "") -> str: """Get a suitable output filename for a plot produced from a Zarr path""" basename = Path(zarr_path).stem.replace( ".zarr", "" ) # handle ".zarr" and ".zarr.zip" path = Path(directory, f"{ba...
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def recipient_format(first, last, addr): """ Format receiption with email address and name if available """ if first == '' and last == '': rec = addr else: rec = first+' '+last+' <'+addr+'>' return rec
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def expandCommaSeparatedRanges(s): """ 's' format - comma separated ranges or values a-b,c,..,d,e-f,a etc. Includes the first and the last value in the range """ range_list = s.split(',') values = list() for r in range_list: # range a-b if '-' in r: ...
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def _min_dummies(dummies, sym, indices): """ Return list of minima of the orbits of indices in group of dummies see `double_coset_can_rep` for the description of `dummies` and `sym` indices is the initial list of dummy indices Examples ======== >>> from sympy.combinatorics.tensor_can impor...
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def unpack(value, number=2, default=None): """Unpack given `value` (item/tuple/list) to `number` of elements. Elements from `value` goes first, then the rest is set to `default`.""" if not isinstance(value, list): if isinstance(value, tuple): value = list(value) else: ...
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def field2range(field): """Return the dictionary of swagger field attributes for a set of :class:`Range <marshmallow.validators.Range>` validators. :param Field field: A marshmallow field. :rtype: dict """ validators = [ validator for validator in field.validators if ( ...
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def _asls(y, baseline, p): """ The weighting for the asymmetric least squares algorithm (asls). Also used by the improved asymmetric least squares algorithm (iasls). Parameters ---------- y : numpy.ndarray, shape (N,) The measured data. baseline : numpy.ndarray, shape (N,) ...
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def check_root_access(repos): """Return 1 iff the associated username is permitted to read REPOS, as determined by consulting REPOS's Authorizer object (if any).""" auth = repos.authorizer() if not auth: return 1 return auth.check_root_access(repos.rootname())
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def uppercase(string: str) -> str: """Convert string into UPPER CASE. Args: string (:obj:`str`): The string to convert. Returns: :obj:`str`: The UPPER CASED string. """ if not string: return "" return string.upper()
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def check_split_ratio(split_ratio): """ Checks that the split ratio argument is not malformed and if not transforms it to a tuple of (train_size, valid_size, test_size) and normalizes it if necessary so that all elements sum to 1. (See Dataset.split docs for more info). Parameters --------...
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def _is_header(row: list) -> bool: """ Determine if a row is a header row. Keyword arguments: row -- the row to check Returns: True if the row is a header row, False otherwise """ return row[0].strip().lower() == "company name"
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def string_convert(string: str): """ 将连字符格式转成小驼峰格式 example: user_name -> userName """ char_list = string.split("_") # 首个单词不转换 for index, char in enumerate(char_list[1:], start=1): char_list[index] = char.capitalize() return "".join(char_list)
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import torch import math def double_phase_amp_phase(amplitudes, phases, three_pi=True, mean_adjust=True): """converts amplitude and phase to double phase coding amplitudes: per-pixel amplitudes of the complex field phases: per-pixel phases of the complex field three_pi: if True, outputs values in ...
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def h_file_to_define(name): """ Convert a .h file name to the define used for the header """ h_name = name[:-2].upper() h_name = "_" + h_name + "_H_" return h_name
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def unique(pcset): """Removes duplicates from pcset.""" l = [] for x in pcset: if x not in l: l.append(x) return l
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def sir(w, t, p): # pylint: disable=unused-argument """ SIR: Simple model of disease spread inputs: w: vector of state variables [S,I,R] where S: Fraction of the population susceptible to the infection I: Fraction on the population infected R: Fraction of the population recov...
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import json def describe_recommendations(recommendations): """Returns a json string representation of recommendation with selected fileds. Args: recommendations: List(common.Recommendation) """ recommendations_sorted = sorted(recommendations, key=lambda x: x.principal) data = [] for r in rec...
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def string_to_numbers(string): """ Convert a string to a list of numbers :param string: Message as string :return: Message as numbers """ vals = [ord(s) for s in string] return vals
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def collect_errors(codebase, verbose=False): """ Collect and return a list of error strings for all `codebase`-level and Resource-level errors. Include stack trace if `verbose` is True. """ errors = [] errors.extend(codebase.errors or []) path_with_errors = [(r.path, r.scan_errors) ...
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def anySelected (tool, params, names): """Determine if any tool's named parameter value evaluates to True.""" anyTrue=False for n in names: if params[tool.i[n]].value: anyTrue=True return anyTrue
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import codecs def read_file_content(path): """ Read file from given path :param path: file path :return: file content """ f = codecs.open(path, 'r', 'utf8') content = f.read() f.close() return content
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def extract_quantiles(in_dist, **kwargs): """Convert using a set of quantiles and the locations at which they are reached Parameters ---------- in_dist : `qp.Ensemble` Input distributions Keywords -------- quantiles : `np.array` Quantile values to use Returns -----...
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from datetime import datetime import re def parse_iso_8601_timestamp(timestamp: str) -> datetime: """Parse a timestamp in ISO 8601 format to a datetime object.""" def shorten_to_milliseconds(match: re.Match) -> str: return f"{match.group(1)}{match.group(2)[:6]}{match.group(3)}" return datetime.s...
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def calculate_normalized_ged(data): """ Calculating the normalized GED for a pair of graphs. :param data: Data table. :return norm_ged: Normalized GED score. """ norm_ged = data["ged"]/(0.5*(len(data["labels_1"])+len(data["labels_2"]))) return norm_ged
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def get_global_dependency_results(global_result_dict, bear_instance): """ This method gets all the results originating from the dependencies of a bear_instance. Each bear_instance may or may not have dependencies. :param global_result_dict: The list of results out of which the dependency ...
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def user_input(prompt,default): """ Like 'raw_input' except that a default value can be specified. """ response = input(prompt+' ['+str(default)+']: ') if response == '': response = default return response
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def auto_raytracing_grid_size(source_fwhm_parcsec, grid_size_scale=0.005, power=1.): """ This function returns the size of a ray tracing grid in units of arcsec appropriate for magnification computations with finite-size background sources. This fit is calibrated for source sizes (interpreted as the FWHM o...
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def _error_message(thing, unit, value, path=None): """Format assertion error based on presence of path. :param thing: Ownership type :type thing: str :param unit: Unit tested :type unit: str :param value: Actual value from test :type value: str :param path: Path tested :type path: O...
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def highlight_row(row): """ highlight mutations in yellow and refseq in silver. :param row: row of dataframe. :return: row of colors. """ mut = row.mut color_list = [""] * 7 + ["background-color: silver"] * 2 + ["background-color: yellow" if i == mut and i != 'N' else ...
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def get_nodename(soname, nodenames): """Generate DOT nodename.""" if soname in nodenames: return nodenames[soname] nn = len(nodenames) seed = "".join([x if x.isalnum() else "_" for x in soname]) nn = "%s_%d" % (seed, nn) nodenames[soname] = nn return nn
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def sort(s, reverse=False): """ Sort given string by ascending order. If reverse is True, sorting given string by descending order. """ return ''.join(sorted(s, reverse=reverse))
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def is_valid_role(user, role): """ Check if role exists and is a server role """ for r in user.server.roles: if r.name == role: return True return False
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def get_taskid_atmptn(key_name): """ get jediTaskID and attemptNr from task attempt key name """ tmp_list = key_name.split('#') jediTaskID = int(tmp_list[0]) attemptNr = int(tmp_list[1]) return jediTaskID, attemptNr
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def dsys(self, kcn="", **kwargs): """Activates a display coordinate system for geometry listings and plots. APDL Command: DSYS Parameters ---------- kcn Coordinate system reference number. KCN may be 0,1,2 or any previously defined local coordinate system number. Notes --...
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from colorama import Fore, Style from colorama import init def show_supported(supported): """ Returns OK (in green) if supported evaluates to True, otherwise NOT OK (in red). """ try: init() startcolor = Fore.GREEN if supported else Fore.RED stopcolor = Style.RESET_ALL exc...
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def list_of(conversion): """Generate conversion function to convert list of strings to list of given type. Caution: For integers representing boolean values, use conversion function mfdnres.tools.bool_from_str, rather than simply bool. >>> a = ["1","2"] >>> list_of(int)(a) [1,2] A...
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def createFreqDict(obj_list): """ Function takes a list of items and create frequency map """ itemFreqMap = {} for item in obj_list: if item in itemFreqMap: itemFreqMap[item] += 1 else: itemFreqMap[item] = 1 return itemFreqMap
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def _attrprint(d, delimiter=', '): """Print a dictionary of attributes in the DOT format""" return delimiter.join(('"%s"="%s"' % item) for item in sorted(d.items()))
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def pad(text, block_size): """ Adds PKCS7 padding to the text based on the block size. Args: text (str): The text to be padded. block_size (int): The block size of the cipher. Returns: str: The padded text. Raises: ValueError: If the block size is not greater than ...
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import random def _sample_randint_on_boundary(upper, overweight_one=False) -> int: """Returns a random number in [1, upper) divisible by four, or 1.""" if overweight_one: if random.random() < 0.5: return 1 raw = random.randint(0, (upper - 1) // 4) if raw == 0: return 1 ...
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def get_iiif_image_url(iiif_manifest): """Given a IIIF manifest dictionary, derives the value for the info.json file URL, which can then be stored in the roll metadata and eventually used to display the roll image in a viewer such as OpenSeadragon.""" resource_id = iiif_manifest["sequences"][0]["canvas...
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def next_power_of_two(x: int) -> int: """ Get the next power of 2 :param x: int :return: int. The next largest power of 2 """ return 2 ** (x - 1).bit_length()
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def calc_padding(img_size,tile_size,tile_overlap): """ Calculates the padding needed to make an image an even multiple of tile size, given overlap between tiles. NOTE: With overlap, final dimensions are hard to visualize. The correct formula for width is (((img_width // stride_w)-1) * stride_w...
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def int_or_float(x): """Return int or float value of x. Args: x (str): Value to convert. Returns: int or float: Raises: ValueError: """ try: return int(x) except ValueError: try: return float(x) except ValueError: rai...
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def generate_block(name, abstract, authors, contributors, types, tags, category, img_url, article_url=None, deployment_url=None): """Generate json documentation for a training program block. If both `article_url` and `deployment_url` are None, the block is assumed to be a container f...
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def median(items): ############################################################################### """ >>> items = [2.3] >>> median(items) 2.3 >>> items = [2.3, 8.1, 3.4, 1.5, 11, 3.42321] >>> median(items) 3.4116049999999998 >>> items = [2.3, 8.1, 3.4, 1.5, 11, 3.42321, -3.1] >>> me...
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import re def unpack_contractions(text): """ Replace *English* contractions in ``text`` with their unshortened forms. N.B. The "'d" and "'s" forms are ambiguous (had/would, is/has/possessive), so are left as-is. """ # standard text = re.sub( r"(\b)([Aa]re|[Cc]ould|[Dd]id|[Dd]oes|[D...
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import math def angle(point_1, point_2): """calculates the angle between two points in radians""" return math.atan2(point_2[1] - point_1[1], point_2[0] - point_1[0])
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def FileDateToTimestamp(FDTimestamp): """ Turn a FILEDATE into a UNIX timestamp """ timestamp = (FDTimestamp - 116444736000000000) / 10000000; return int(timestamp)
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import re def validate_backup_window(window): """Validate PreferredBackupWindow for DBInstance""" hour = r'[01]?[0-9]|2[0-3]' minute = r'[0-5][0-9]' r = ("(?P<start_hour>%s):(?P<start_minute>%s)-" "(?P<end_hour>%s):(?P<end_minute>%s)") % (hour, minute, hour, minute) range_regex = re.comp...
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import hashlib def md5_convert(string): """ 计算字符串md5值 :param string: 输入字符串 :return: 字符串md5 """ m = hashlib.md5() m.update(string.encode()) return m.hexdigest()
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def make_gene2wells_dict(fn, delim=',', header=True, symbol_plate_well_ctrl=[0, 4, 6, 10]): """Produce a gene to well map from the annotation table file. Parameters ---------- fn : string The input filename. The file should be a comma or tab delimited table. ...
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def open_and_read(infile_path_and_name): """ opens a file and returns a long long long string :infile_path_and_name: string of the path/path/txtFileName.txt from the current directory """ path = infile_path_and_name with open(path, 'r') as file: string = file.read().replace('\n', '') ...
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import torch def mean_crossentropy_loss_alt(weights, targets): """ Evaluates the cross entropy loss :param weights: torch Variable, (batch_size, num_measures, seq_len, num_notes) :param targets: torch Variable, (batch_size, num_measures, seq_len) ...
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from datetime import datetime from typing import Iterable import requests import re def cors_get_station_lists_for_day(date: datetime) -> Iterable[str]: """ Given a date, returns the stations that the US CORS network reports as available """ url = "https://geodesy.noaa.gov/corsdata/rinex/" res...
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def compose(scheme, authority, path, **kwargs): """Build an IRI out of constituent parts. """ return '{scheme}://{authority}{path}{query}{fragment}'.format( scheme=scheme, authority=authority, path=path, query='?{}'.format(kwargs['query']) if kwargs.get('query') else '', ...
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def is_pythagorean_triplet(a,b,c): """ Checks if a,b and c forms pythagorean triplet i.e., a^2 + b^2 = c^2 Parameters ---------- a : int denotes positive integer a in a^2 + b^2 = c^2 b : int denotes positive integer b in a^2 + b^2 = c^2 c : int denotes positive integ...
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import re def GetMountPoint(mountlist, device): """ Example of mountlist: /dev/sda1 on / type ext4 (rw) proc on /proc type proc (rw) sysfs on /sys type sysfs (rw) devpts on /dev/pts type devpts (rw,gid=5,mode=620) tmpfs on /dev/shm type tmpfs (rw,rootcontext="system_u:o...
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def print_decorate(msg,expr): """ Helper function to make a print decoration around lambda expression. It will print `msg`, and then return the result of `expr`. If it typically used in expressions like `lambda x: print_decorate("Processing {}".format(x), do_smth_with(x))` :param msg: Message to pri...
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def get_hijitreg_translations(flat): """ Parse a flatfile created by the ISIS program hijitreg and return a list of the average sample and line translations, rounded to the nearest int. Parameters ---------- flat : str path to a flatfile (text file) created by the ISIS program hijit...
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def update_field(pc, field, pc_data): """ Updates field in-place. """ pc.pc_data[field] = pc_data return pc
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