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def _iget(key, lookup_dict): """ Case-insensitive search for `key` within keys of `lookup_dict`. """ for k, v in lookup_dict.items(): if k.lower() == key.lower(): return v return None
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def url_replace_pop(request, field, value): """Remove a value from the GET dictionary and return it urlencoded.""" dict_ = request.GET.copy() list_ = dict_.pop(field) dict_.setlist(field, [v for v in list_ if v != value]) return dict_.urlencode()
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def create_room_pairs(session_capacities): """ Creates all size 2 combinations of rooms. Parameters: session_capacities: a dictionary mapping each session name to a positive integer for how many students can fit in that session Returns a set of room pairings (tuples). ...
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def get_commerce_url(root_url: str) -> str: """Get the Kamereon base commerce url.""" return f"{root_url}/commerce/v1"
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def __is_member_of(self, group, recursive=False): """Check whether this object is a member of the given group""" return group in self.get_memberOfs(recursive=recursive)
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def get_submission_type(submission_type): """ A single dispatch to return a Submission Type from either an instance or the name """ return submission_type
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def f1_from_confusion(tp , fp , fn , tn): """ Compute the F1 score from a confusion matrix. Parameters ---------- tp : int Number of true positives fp : int Number of false positives fn : int Number of false negatives tn : int Numbe...
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def _combined_model_name(org, repo=None): """Return the name of the combined model for a repo or organization. If repo is specified looks for a repo specific model. If repo is none we return an org wide model. Args: org: Name of the org. repo: (Optional) The name of the repo """ if repo: retur...
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def simple_hexdump(bytes_, row_size=16): """Convert a bytestring into hex characters. This is called "simple" because it doesn't print the index in the leftmost column or the printable characters in the rightmost column (as the CLI ``hexdump -C`` does). Args: bytes_ (bytes): The bytestring...
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def pow_xin(p, i, n): """ >>> from sympy.polys.domains import QQ >>> from sympy.polys.rings import ring >>> from sympy.polys.ring_series import pow_xin >>> R, x, y = ring('x, y', QQ) >>> p = x**QQ(2,5) + x + x**QQ(2,3) >>> index = p.ring.gens.index(x) >>> pow_xin(p, index, 15) x**15 ...
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from typing import Callable from typing import List from typing import Tuple from typing import Type import inspect def parameters(method: Callable) -> List[Tuple[str, Type]]: """ Inspect the desired method extracting a list of parameters needed to execute it. Parameters: method: The type.Cal...
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from typing import Iterable def is_iterable(x): """ Utility function to check if input can be iterated over (that is, if input is a List, np.array, pd.date_range, etc.) """ return isinstance(x, Iterable)
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def get_heads(heads, r, c): """ Extracts simulated head values at specified row, column. Parameters ---------- heads : 2D array OR 3D array numpy array of shape nlay by n locations (2D) OR complete heads array of the model for one time (3D) r : 1D array-like of ints, of length n...
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import torch def get_sobel_kernel_5x5_2nd_order() -> torch.Tensor: """Utility function that returns a 2nd order sobel kernel of 5x5""" return torch.tensor([ [-1., 0., 2., 0., -1.], [-4., 0., 8., 0., -4.], [-6., 0., 12., 0., -6.], [-4., 0., 8., 0., -4.], [-1., 0., 2., 0....
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import ctypes def generate_hash (element, hash_engine): """ Generate hash of a ctypes element :param element: Element to hash :param hash_engine: Hashing engine to utilize :return Buffer with digest """ # Copy the element instance to a bytearray. Passing element directly to the hash API...
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def taber(msg, size): """ Function which tabulates strings. Example ------- >>> taber(msg='Example string', size=42) 'Example string ' """ return str(msg) + (size - len(str(msg)))*' '
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def harass_metric(damage_taken_p1: float, damage_taken_p2: float) -> float: """ A metric that looks at damage taken as a fraction of total damage dealt in lane. Formula: 1 - (damage_taken_p1/(damage_taken_p1 + damage_taken_p2)) :param damage_taken_p1: Damage taken by player one :param damage_taken...
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def load_file_into_list(file_path: str) -> list[str]: """It reads the URLs of our monitoring targets (Webs to monitor) from a config file and returns them as a `list` object. Args: file_path (str): Full path to config file with the URLs Returns: list[str]: URLs loaded from config file ...
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import torch def calc_batch_loss_cross_ent_list(model, batch): """ List-wise Cross-Entropy loss, described in "Baoxu Shi, Tim Weninger, ProjE: Embedding Projection for KnowledgeGraph Completion, AAAi 2017". :param model: A PathL model. :param batch: An iterable with node pairs. :return: List-wise...
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from typing import Tuple from typing import List def count_nb_occurrences(tokens: Tuple[str, ...], all_tokens: List[str]): """Count the number of occurences of the sequence of tokens in the full list all_tokens""" nb_occurrences = 0 for i in range(len(all_tokens)): for k in range(len(tokens))...
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import hashlib def passwordToHash(passwd:str) -> str: """ returns any string into a sha256 encoded password hash """ passwd = str(passwd) passwd = hashlib.sha256(passwd.encode("UTF-8")).hexdigest() return passwd
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def midval(arr): """ Calculate the middle value vector. Args: arr (np.ndarray): The input N-dim array Returns: arr (np.ndarray): The output (N-1)-dim array Examples: >>> midval(np.array([0, 1, 2, 3, 4])) array([0.5, 1.5, 2.5, 3.5]) """ return (arr[1:] - arr...
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def get_raw_smn1_cn(full_length_cn, smn1_fraction): """ Return the raw SMN1 CN by muliplying full-length SMN CN and SMN1 fraction. """ lcount = [] for site_fraction in smn1_fraction: lcount.append(round(full_length_cn * site_fraction, 2)) return lcount
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from random import randint def deal_community(deck, cardCount): """choose cards randomly from deck""" deckCopy = deck[:] dealt = [] for i in range(cardCount): val = randint(0, len(deckCopy)-1) dealt.append(deckCopy[val]) del deckCopy[val] return dealt
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def _trim(_vector): """Return _vector with all trailing zeros removed.""" if not _vector or len(_vector) == 1: return _vector ind = len(_vector) while _vector[ind - 1] == 0 and ind > 0: ind -= 1 return _vector[:ind]
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def convertToLabelFormat(oldLabels): """ Convert the label form with sets to label form with lists. For later functions, the labels are expected to be of the form: { 'label': [nodeIndex] } that is, a dictionary whose keys are the labels and values are the index number of the nodes that ...
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def lcm(a: int, b: int) -> int: """Return a LCM (Lowest Common Multiple) of given two integers >>> lcm(3, 10) 30 >>> lcm(42, 63) 126 >>> lcm(40, 80) 80 >>> lcm(-20, 30) 60 """ g = min(abs(a), abs(b)) while g >= 1: if a % g == 0 and b % g == 0: break ...
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def generic_cmp(x,y): """ Compare x and y and return -1, 0, or 1. This is similar to x.__cmp__(y), but works even in some cases when a .__cmp__ method isn't defined. """ if x<y: return -1 elif x==y: return 0 return 1
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def hparams_frame_size(hparams): """Find the frame size of the input conditioned on the input type.""" if hparams.spec_type == 'raw': return hparams.spec_hop_length return hparams.spec_n_bins
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def clamp(value, low, high): """Clamp value between low and high (inclusive). Args: value (int, float): The value. low (int, float): Lower bound. high (int, float): Upper bound. Returns int, float: Value such that low <= value <= high. """ return max(low, min(value,...
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import importlib def load_config(config_name): """Load config from corresponding configs.<config_name> module.""" return importlib.import_module('configs.%s' % config_name).config
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def is_order_family(listrow): """ Check if a CSV row contains only the order and family data :param listrow: CSV row :return: True if the row contains only the order and family data """ assert type(listrow) is list return listrow[1] == ''
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import torch def get_available_models_names(force_reload=False): """Gives list of model names available on torch hub Return: models (list[string]): list of pytorch/vision models available on pytorch hub """ return torch.hub.list('pytorch/vision', force_reload=f...
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import string def make_name_valid(name): """Make a string into a valid Python variable name.""" if not name: return None valid_chars = "_%s%s" % (string.ascii_letters, string.digits) name = str().join([c for c in name if c in valid_chars]) if name and not name[0].isalpha(): name = ...
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import re def extract_vars(template): """ Extract variables from template. Variables are enclosed in double curly braces. """ keys = [] for match in re.finditer(r"\{\{ (?P<key>\w+) \}\}", template): keys.append(match.groups()[0]) return keys
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from typing import Iterable def ip_groups_to_ranges(ip_range_groups: Iterable): """Collapse ip groups to ranges. Args: ip_range_groups (Iterable): a list of lists containing connected IPs Returns: Set. a set of Ranges. """ ip_ranges = set() for group in ip_range_groups: ...
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import requests def makeRadioURL(date): """Gets the URL for an episode from its date.""" urlbase = "https://media.focusonthefamily.com/fotf/mp3/aio/" urltip = "aio_{0}.mp3".format(date) # Sometimes the URLS contain aio and sometimes aiow. I don't see a pattern so I try both. if requests.get(urlba...
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def _LDMODULEVERSION(target, source, env, for_signature): """ Return "." + version if it's set, otherwise just a blank """ value = env.subst('$LDMODULEVERSION', target=target, source=source) # print("_has_LDMODULEVERSION:%s"%value) if value: return "."+value else: return ""
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import torch def sample_correlated_gaussian(rho=0.5, dim=20, batch_size=128, cubic=None): """Generate samples from a correlated Gaussian distribution.""" x, eps = torch.chunk(torch.randn(batch_size, 2 * dim), 2, dim=1) y = rho * x + torch.sqrt(torch.tensor(1. - rho**2).float()) * eps if cubic is not ...
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def summarize_packet(pkt): """ Summarizes a packet into a human-legible string. Five key fields are represented in the summary - source/destination IP, source/destination MAC address, source/ destination TCP/UDP port, and the transport protocol in use (such as TCP/UDP). If any of the five key fields...
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from typing import List from typing import Any def _get_avg(values: List[Any]): """Get average value of a list. Args: values: A list of values. Returns: The average value in the list. """ return sum(values) / len(values)
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def anal_dboc(data_dict): """ Returns the DBOC value """ return data_dict["dboc"]["dboc"]
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import socket def get_celery_shutdown_attachment(**kwargs): """Create the slack message attachment for celery shutdown.""" if kwargs["show_celery_hostname"]: message = "_Celery is shutting down on {}._".format( socket.gethostname() ) else: message = "_Celery is shutting...
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from typing import Tuple def reverse_causal(effective_kernel_size: int) -> Tuple[int, int]: """Post-padding such that output has no dependence on the past.""" return (0, effective_kernel_size - 1)
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def sanitize_string(string): """Sanitizes a string for it to be between U+0000 and U+FFFF""" if string: return ''.join(c for c in string if ord(c) <= 0xFFFF).strip()
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import binascii def b2a_hex(s): """Convert binary to hexadecimal""" # For completeness return binascii.b2a_hex(s)
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def split_s3_full_path(s3_path): """ Split "s3://foo/bar/baz" into "foo" and "bar/baz" """ bucket_name_and_directories = s3_path.split('//')[1] bucket_name, *directories = bucket_name_and_directories.split('/') directory_path = '/'.join(directories) return bucket_name, directory_path
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def is_null(content, nulls=None, blanks_as_nulls=False): """Determines whether or not content can be converted into a null Args: content (scalar): the content to analyze nulls (Seq[str]): Values to consider null. blanks_as_nulls (bool): Treat empty strings as null (default: False). ...
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def format_BUILD_MAP_UNPACK_WITH_CALL(oparg): """The lowest byte of oparg is the count of mappings, the relative position of the corresponding callable f is encoded in the second byte of oparg.""" rel_func_pos, count = divmod(oparg, 256) return ("%d mappings, function at %d" % (count, count + rel_fu...
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def extract_data(spark): """Load data from Parquet file format. :param spark: Spark session object. :return: Spark DataFrame. """ df = ( spark .read .parquet('tests/test_data/employees')) return df
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def get_version_from_image_tag(image_tag: str) -> str: """Returns the image version from an image tag""" return image_tag.split(":")[1]
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import string def as_variable_name(x): """ Convert a string to a legal python variable name Parameters ---------- x : str A string to (possibly) rename Returns ------- variable_name : str A legal Python variable name """ allowed = string.ascii_letters + string...
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def str_to_bool(s): """ Basic converter for Python boolean values written as a str. :param s: The value to convert. :return: The boolean value of the given string. @raises: ValueError if the string value cannot be converted. """ if s == 'True': return True elif s == 'False': ...
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def promote_to_double_precision(array): """Convert an array to real or complex double precision.""" if array.dtype == "float32": return array.astype("float64", copy=False) if array.dtype == "complex64": return array.astype("complex128", copy=False) return array
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from typing import Optional import re def to_azure_friendly_string(x: Optional[str]) -> Optional[str]: """ Given a string, ensure it can be used in Azure by replacing everything apart from a-z, A-Z, 0-9, or _ with _, and replace multiple _ with a single _. :param x: Optional string to be converted. ...
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def hamming(num): """Returns the nth hamming number""" h = [1] * num x2, x3, x5 = 2,3,5 i = j = k = 0 for n in range(1, num): h[n] = min(x2, x3, x5) if x2 == h[n]: i += 1 x2 = 2 * h[i] if x3 == h[n]: j += 1 x3 = 3 * h[j] ...
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def fact(n): """ calculate n! iteratively """ result = 1 if n > 1: for f in range(2, n + 1): result *= f return result
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def _get_coefficients(crossection, cn): """ Calculates the extinction, scattering or absorbtion coefficient Parameters ---------- crosssection: float Units are um^2 cn: float Particle concentration in cc^-1 Returns -------- coef...
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import random def rand(ctx, plan, candidates): """Random choose one""" return random.choice(candidates)
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def readfile(fname): """Helper function to read a file (binary). :param fname: file name to be read :returns: contents of file """ with open(fname, "rb") as stream: return stream.read()
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def getattr_unwrapped(env, attr): """Get attribute attr from env, or one of the nested environments. Args: - env(gym.Wrapper or gym.Env): a (possibly wrapped) environment. - attr: name of the attribute Returns: env.attr, if present, otherwise env.unwrapped.attr and so on recursivel...
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from typing import Pattern import re def compile_regex(pattern: str) -> Pattern[str]: """Compile a regex.""" return re.compile(pattern)
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def df_swap_cols(df, columns): """Swaps the column by column name or index columns: Can be a tuple of column indexes or names ex. (2, -1) or ('a', 'b') """ first, second = columns cols = list(df.columns) if type(first) is int: cols[first], cols[second] = cols[second], cols[first] ...
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def set_timezone_offset(request): """Sets the timezone offset.""" request.session['timezone'] = request.form.get('offset', type=int) return 'OKAY'
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def dos_integral(E,dos,m=0): """ A function to compute the integral of an input phonon DOS (*dos*) with the 3/8 Simpson method. *m* is the moment of the integral, if :math:`m>0` different moments can be calculated. For example, with :math:`m=0` (default) it returns the number of modes from the dos, ...
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def fen_expand(fen): """Expand fen chessboard to include *every* square. Use '.' for empty squares fen="rnbqkbnr/pppppppp/8/8/8/8/PPPPPPPP/RNBQKBNR w KQkq -" """ s="" for c in fen: if c=="/": continue if c in "0123456789": s+="."*int(c) else: ...
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def __check_duplicate_args(lf_graph: dict) -> bool: """ Check for duplicated predicate arguments in logical form graph. Parameters: lf_graph: dict of id (int) and graph (LogicalFormGraph) Returns: true if logical form graph has no predicate w/ duplicate arguments """ graph = lf_graph['gra...
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def get_subject_list(manifest_df, subject_list_file): """ If a list of subject is provided then use that, else collect all unique subject ids from the s3 spreadsheet and use that instead :param manifest_df: pandas dataframe created from the s3 csv :param subject_list_file: cli path to file containin...
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def show_result_pyplot(model, img, result, score_thr=0.3, fig_size=(15, 10)): """Visualize the detection results on the image. Args: model (nn.Module): The loaded detector. img (str or np.ndarray): Image filename or loaded image. result (tuple[list] or list): The detection result, can be...
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def generate_block_number( chapter_number, heading_number, subheading_number, paragraph_number ): """ Returns chapter_number.subheading_number.paragraph_number if chapter_number is available, or heading_number.subheading_number.paragraph_number if not. Doesn't include any part that isn't available....
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def tidy_to_dict(df, key='name', value='value', keys_exclude=None, cast_value=float): """Convert a tidy DataFrame into a dictionary. This function converts two columns from an input tidy (or long-form) DataFrame into a dictionary. A typical use-case is passing parameters stored in tidy...
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import textwrap def justify(s, max_length, left_pad=0): """ Re-wrap the string s so that each line is no more than max_length characters long, padding all lines but the first on the left with the string left_pad. """ txt = textwrap.wrap(s, width=max_length, subsequent_indent=" " * left_pad) ...
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def ns_interp(text, ns=None): """ Triple strings (e.g. foo:Bar) have to be expanded because SPARQL queries can't handle the subject of a triple being d1resolve:doi:10.6073/AA/knb-lter-pie.77.3 but can handle <https://cn.dataone.org/cn/v1/resolve/doi:10.6073/AA/knb-lter-pie.77.3> ...
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def option(name, short, type, default, descr=''): """Declare a new option for the given cli-command. :param name: option name :param short: option short name :param type: option type :param default: option default value :param descr: option description :return: a new decorator that will dec...
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def pade(T, n=1): """ Create a linear system that approximates a delay. Return the numerator and denominator coefficients of the Pade approximation. Parameters ---------- T : number time delay n : integer order of approximation Returns ------- ...
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def call(func, *args, **kwargs): """ Call `func` with positional arguments `args` and keyword arguments `kwargs`. Parameters ---------- func : callable Function to call when the operation is executed. args : list Sequence of positional arguments passed to `func`. kwargs : di...
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def _get_col(column, prefix): """ Get the column name after removing the prefix. """ # Check if the column is starting with the given prefix if column.startswith(prefix): # Return the column name after removing the prefix return column[len(prefix):] # Return None, if the column d...
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def req_input(prompt, options): """ Query for an aswer to prompt message until the user provides a valid input (i.e., answer is in options). Parameters ---------- prompt: String Prompt text for input()'s argument. options: List List of options to accept. Elements in list are casted into string...
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import math def pyramid_sizes(init_size, a_output_size, b_output_size): """ Determine appropriate resolutions for all levels of an image pyramid. @param init_size Max width/height of the lowest resolution of the pyramid. @param a_output_size Size (w,h) of the exemplar image (ai) of the highest re...
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def ps1_stack_path(proj_cell, sky_cell, band): """ construct relative path for a PS1 stack image by projection cell, sky cell, and band. """ proj_cell = str(proj_cell).zfill(4) sky_cell = str(sky_cell).zfill(3) return ( f"/rings.v3.skycell/{proj_cell}/{sky_cell}/" f"rings.v3....
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def sort_array_with_id(arr): """ Sort array ascending and keep track of ids. :param arr: array with values :return: array with tuples (id, val) """ tuple_arr = [(id, arr[id]) for id in range(len(arr))] return sorted(tuple_arr, key=lambda t: t[1])
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def fix_initial_data(initial, initial_data_keymap): """ Take a dict like this as `initial`: { 'key1': 'val1', 'key2': 'val2', 'key3': 'val3'} and a dict like this as `initial_data_keymap`: { 'newkey1': ['key1', 'key2'], 'newkey2': ['key3']} and remap the initial dict to have this form: { 'n...
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def binary_search(list, value): """This function takes a list as input and a value to find.Then it searches for that value using binary search""" left, right = 0, len(list)-1 while left <= right: mid = (left+right)//2 if list[mid] == value: return mid #Returning the index ...
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def image_index(pathname): """ Helper function for submission. Takes the path to an image, e.g. "./image_folder/15.jpg", and returns the image name, in this example "15.jpg". """ return pathname[pathname.rfind("/")+1:]
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def change_of_basis(X, W): """ Projects data onto new basis W. Args: X (numpy array of floats) : Data matrix each column corresponding to a different random variable W (numpy array of floats) : new orthonormal basis columns correspond to bas...
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def task_to_string(df_task, sep=',', sep_points=" "): """ Returns a string from a task DataFrame with sep=',' and sep_points=" " like: '5.9840002060,44.0549011230,1500.0 6.0107221603,44.0150871277,1500.0 6.3285999298,44.0536003113,1600.0 6.5361166000,44.2888832092,2700.0 6.3811173439,44.4144477844,2...
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def strxor(x: bytes, y: bytes) -> bytes: """XOR two byte strings""" return bytes([ix ^ iy for ix, iy in zip(x, y)])
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def parse_start_step(stdout_file): """ Parses the starting_step of the clip from the stdout.txt of the job's run. """ with open(stdout_file, 'r') as f: for line in f.readlines(): if 'FLAGS.start_step' in line: return int(line.split()[-1]) # Otherwise return a default star...
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def find_first_level_groups_span(string, enclosing): """Return a list of pairs (start, end) for the groups delimited by the given enclosing characters. This does not return nested groups, ie: '(ab(c)(d))' will return a single group containing the whole string. >>> find_first_level_groups_span('abcd...
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def decode_resouce_type(id: str) -> int: """Decode a number between 0 and 0xFFFF from a 4-character hex string""" return int(id, 16)
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import torch def draw_r(ps:int, ci: int, N: int, X): """ Draws a simple random multi-channel probing matrix. Arguments: ps (int): Number of probing vectors. ci (int): Number of input channels. N (int): Number of pixels. X (tensor): Input tensor (untouched, used for device ...
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from typing import Callable def get_internal_prop_name(instance: object, func: Callable) -> str: """ Build the name to use for storing the value of a property of an object. The internal property name is based on the function name (i.e. the decorated property name). If the object has an instance or cl...
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def __swap_cols(M, m, n): """swap column m and n of matrix M""" N = M.copy() N[:, m] = M[:, n] N[:, n] = M[:, m] return N
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def modular_multiply(A, B, C): """Finds `(A * B) mod C` This is equivalent to: `(A mod C * B mod C) mod C` https://www.khanacademy.org/computing/computer-science/cryptography/modarithmetic/a/modular-multiplication https://www.khanacademy.org/computing/computer-science/cryptography/modarithmetic/a...
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def update_chunk_id_maps(chunk_id_maps, cont_id_map): """ Creates a new chunkwise id map as if cont_id_map is applied after each chunk id map """ for mapping in chunk_id_maps.flat: for (k, v) in mapping.items(): mapping[k] = cont_id_map.get(v, v) return chunk_id_maps
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def parse_job_titles(str): """Parse job titles from sql into a list.""" str1 = str.replace('{', '').replace('}', '').replace('"', '') job_list = str1.split(',') return job_list
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import torch def reparameterize(mu, logvar): """Sample from N(mu, var) Parameters ---------- mu : :obj:`torch.Tensor` vector of mean parameters logvar : :obj:`torch.Tensor` vector of log variances; only mean field approximation is currently implemented Returns ------- ...
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from typing import Any def s3_read_text(s3: Any, bucket: str, key: str) -> str: """ Reads the contents of a S3 bucket/key. """ obj = s3.Object(bucket_name=bucket, key=key) return obj.get()["Body"].read()
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import pathlib def get_files_for_extension(directory: pathlib.Path, extension: str): """Cached file list. Parameters ---------- directory The directory within which to search extension The extension to recursively search for """ return [ str(item.relative_to(direc...
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def sort_iati_element(element, schema_subdict): """ Sort the given elements children according to the order of schema_subdict. """ def sort(x): try: return list(schema_subdict.keys()).index(x.tag) except ValueError: # make sure non schema elements go to the end ...
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