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from typing import List import itertools def get_config_combination_list(settings, default=None) -> List: """ Given a list of hyperparameters return all combinations of that. """ keys = list(settings) r = [] for values in itertools.product(*map(settings.get, keys)): d = dict(zip(keys, ...
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import torch def kl_divergence_bern_bern(z_pres_logits, prior_pres_prob, eps=1e-15): """ Compute kl divergence of two Bernoulli distributions :param z_pres_logits: (B, ...) :param prior_pres_prob: float :return: kl divergence, (B, ...) """ z_pres_probs = torch.sigmoid(z_pres_logits) kl...
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def write_pos_numpy(pos, fn): """ Write the data to a .pos file (binary file type). See the ``read_pos_numpy'' function for more information on the .pos file format. Parameters ---------- pos : Numpy array The data to write fn : str The filename to which to write Retur...
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def query_mission(id): """ Build the Query for a single mission """ query = f''' {{ mission(id:"{id}") {{ id name manufacturers description website }} }} ''' return query
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def triple_step_iterative(nb_of_steps): """ The most naive implementation, using 3 variables corresponding to the 3 previous states, we calculate the next and update them continuously until we've looped up to nb_of_steps. """ a, b, c = 0, 0, 1 for step in range(nb_of_steps): temp_var...
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def length(iterable): """ Return number of elements in iterable. Consumes iterable! >>> length(range(10)) 10 :param iterable iterable: Any iterable, e.g. list, range, ... :return: Length of iterable. :rtype: int """ return sum(1 for _ in iterable)
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import random import string def random_string(length: int = 10) -> str: """Returns a random string of lowercase letters and digits with a given length. Args: length: output length Returns: a random string with length being `length` """ return "".join( [random.choice(strin...
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from typing import List from typing import Union def replace_many( value: str, substrings_to_replace: List[str], replacement_substrings: Union[List[str], str] ) -> str: """ Function replace many substring at once. Args: value: String in which we want to replace the substri...
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def find_linestarts(codeobj): """Finds the offsets in a bytecode which are the start a line in the source code. Parameters ========================================= codeobj (code): code object Returns ========================================= dict: a dictionary with offsets as the keys and ...
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def _standard_uuid(short: int) -> str: """Gets a 128-bit UUID from a ``short`` UUID. Args: short: a 16-bit or 32-bit UUID. Returns: A 128-bit UUID as a string. """ return f"{short:08x}-0000-1000-8000-00805f9b34fb"
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from textwrap import dedent def default_myst_include(root_file: str) -> str: """Return string which is a MyST include directive pointing to `root_file`, located under `..` relative to `docs`. See: https://myst-parser.readthedocs.io/en/latest/sphinx/use.html#howto-include-readme """ template_includ...
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def snake_case(text): """Normalize text to snake_case""" return text.strip().replace("-", "_").replace(" ", "_").lower()
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def make_list_if_string(item): """Put `item` into a list.""" if isinstance(item, str): return [item] return item
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from typing import List def factorize(n: int) -> List[int]: """Prime factorization Factorize integer `n` with time complexity O(sqrt(n)) Args: n: Integer to factorize. Returns: List of prime factors of `n`. """ res: List[int] = [] for i in range(2, int(n ** 0.5) + 1): ...
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from typing import Iterable from typing import Iterator def iter_(iterable: Iterable) -> Iterator: """Returns appropriate iterator for the given iterable. This is mainly created because python's ``iter`` returns an iterable of keys instead of keys and values for ``dict``. >>> tuple(iter_({1: "a", 2: ...
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import re def toxicity_check(word_list,text): """ Check words that are profane Parameters ---------- word_list: set set of words in english dictionary text : str output string from function pre-processing Returns ------- set list of words that are prof...
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def aminoacidSMILES(amino): """ Obtain the SMILES representation of a particular amino acid Arguments: amino -- One-letter code of the amino acid Return: smiles -- 1D Chemical representation of the amino acid """ # Dictionary with the SMILES per amino acid aminoacids ...
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def transpose(lst): """ Transposes a matrix. """ return list(map(list, zip(*lst)))
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def per_100_diff(v1: float, v2: float, n_digits: int = 2) -> float: """Computes the percentage difference between two values and rounds it to a number of digits. Args: v1 (float): One value. v2 (float): Other value. n_digits (int, optional): Number of digits to round the result. Default...
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def _validate_compatabilities(compatabilities, *args, **kwargs): """ Given a list of compatability functions, run the checks :param compatabilities: a list of compatability functions to call :param args: any arguments to pass to compatability functions :param kwargs: any arguments to pass to compa...
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def add_star(value: str, pvalue: float, star: bool) -> str: """ Add 1, 2 or 3 stars to a string base on the p-value Adds 1 star if the pvalue is less than 10%, 2 if less than 5% and 3 is less than 1%. Parameters ---------- value : str The formatted parameter value as a string. ...
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def prettify_fingerprint(fingerprint): """ Returns the fingerprint in its common pretty form:: XXXX XXXX XXXX XXXX XXXX XXXX XXXX XXXX XXXX XXXX """ if fingerprint is None: return 'NO FINGERPRINT' chunks = [fingerprint[i:i + 4] for i in range(0, 32, 4)] return '%s %s' % (' '.jo...
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from typing import Dict def merge_dicts_strict(d1: Dict, d2: Dict) -> Dict: """Merge two dicts in a strict manner, i.e. the second dict overwrites keys of the first dict but all keys in the second dict have to be present in the first dict. :param d1: base dict which will be overwritten :param d2: ...
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def opts_dict(opts): """ Convert an user_options style list to a dictionnary indexed by the long option name. """ return dict([(x[0], x) for x in opts])
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def _transform_old_style_comments(annotation): """ Transform an old-style, targetless "comment" into one with a target. If this annotation has a URI, but no targets and no references, then it's an "old-style" comment or "page note". Detect this for old clients and rewrite the annotation target prop...
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from datetime import datetime def to_utc_date(date): """Convert a datetime object from local to UTC format >>> import datetime >>> d = datetime.datetime(2017, 8, 15, 18, 24, 31) >>> to_utc_date(d) datetime.datetime(2017, 8, 16, 1, 24, 31) Args: date (`datetime`): Input datetime objec...
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def check_integer(initial_number_of_balls): """ This function checks if the user's initial input is an integer or not. If not: return False If it is: return True :param initial_number_of_balls: this is the variable saving the user's input :return: True if the user puts in an integer False if...
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def _add_objects_loose_loop(container, data): """Add loose objects to a container, within a for loop. :param container: a Container :param data: a dictionary where the key is an arbitrary identifier, and the value is a byte string. :return: a dictionary where the keys are the object hash keys as return...
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def validate_type(value, type_, name=None): """Validates that value is of the specified type. Args: value: The value to validate. type_: The requested type. name: The name of the argument being validated. This is only used to format error messages. Returns: A valid value of type `type_`. ...
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def deleteSymbol(command, mySymbols): """ Check if command is to delete stock symbol (d | delete [SYM/#]). """ expression = command.strip().lower() words = expression.split() return (len(mySymbols) > 0 and ("d " in expression or "delete " in expression) and (words[0] == "d" or words[0] == "delete") and ...
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def out_tconv(spatial, config): """ Calculate spatial output shape after transpose convolution. Arguments: spatial (tensor): spatial dimensions. config (dict): module parameters. """ p, k, s = [config[k] for k in ['padding', 'kernel_size', 'stride']] p2 = p if isins...
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def Get_mte_status(cur, status): """ Perform and execute mysql command (select by M&TE status), obtain the all response from DB # result = cur.fetchall() # This method fetches all rows from the last executed statement # result = cur.fetchone() # This method return the first row of the result :param...
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def get_samples(distribution, num_samples, seed=None): """Given a batched distribution, compute samples and reshape along batch. That is, we have a distribution of shape (batch_size, ...), where each element of the tensor is independent. We then draw num_samples from each component, to give a tensor of shape: ...
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def get_update_args(delta: dict, data: dict) -> dict: """ Change the updated field names to fit the pull-request update command. Args: delta (dict): Updated fields from XSOAR incident mirroring. data (dict): Incident source fields from XSOAR incident mirroring. Returns: dict: Up...
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def load_metadata(filename): """ Loads transcriptions from metadata csv. """ with open(filename, encoding='utf-8') as f: filepaths_and_text = [line.strip().split("|")[:2] for line in f] return dict(filepaths_and_text)
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def sigmoid_grad(f): """ Computes the gradient for the sigmoid function """ return f * (1.0 - f)
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def site_to_key(site, state=""): """Convert site to key. `state` is added to end of key.""" if type(state) != str: raise Exception("`state` must be a string.") return ",".join([str(l) for l in site]) + state
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def add_all(seq): """Add all of the elements of seq.""" i = 0 s = 0 while i < len(seq): s += seq[i] i += 1 return s
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def get_condition_label(condition_id: str) -> str: """Convert a condition ID to a label. Labels for conditions are used at different locations (e.g. ensemble prediction code, and visualization code). This method ensures that the same condition is labeled identically everywhere. Parameters ----...
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def is_stranded(G, q): """Returns True iff `q` is stranded in `G`. A vertex `q` in `G` is :dfn:`stranded` if there is no edge starting at `q` or if there is no edge ending at `q`. Parameters ---------- G : graph q : vertex in `G` Examples -------- >>> G = nx.MultiDiGraph() ...
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def num_frames(df): """Total number of frames.""" return df.index.get_level_values(0).unique().shape[0]
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import json import requests def fetch_file_from_web(server_url, path, transform_func=json.loads): """Fetch file from a web server The default behavior is to transform the response to a json. """ artifact_url = "{0}/{1}".format(server_url, path) r = requests.get(artifact_url) r.raise_for_statu...
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import typing def parse_tags(tags_string: str) -> typing.List[str]: """ Parse the `Tags` section and get a list of tags. :param tags_string: A string containing all tags, with comma as delimiter. :return: A sorted list of stripped tags. """ tags = tags_string.split(',') if not tags: ...
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import hashlib def sha256_bytes(data): """Computes sha256sum.""" hasher = hashlib.sha256() hasher.update(data) return hasher.hexdigest()
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def issubtype(tcon1, tcon2): """ Check whether tcon1 <: tcon2 """ return tcon2 in tcon1.supertypes
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import re def remove_links(tweet): """Takes a string and removes web links from it""" tweet = re.sub(r'http\S+', '', tweet) # remove http links tweet = re.sub(r'bit.ly/\S+', '', tweet) # remove bitly links tweet = tweet.strip('[link]') # remove [links] tweet = re.sub(r'pic.twitter\S+','', twe...
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def find_layer(arch, target_layer_name): """Find target layer to calculate CAM. : Args: - **arch - **: Self-defined architecture. - **target_layer_name - ** (str): Name of target class. : Return: - **target_layer - **: Found layer. This layer will be hooked to g...
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import copy def _get_value(item, key): """Grabs a nested value within a dict :param dict item: the dictionary :param str key: the nested key to find :returns: the value if found, otherwise None """ keys = key.split('.', 1) if isinstance(item, dict): if len(keys) == 2: ...
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import struct def read_plain_double(fo): """Reads a 64-bit float (double) using the plain encoding""" tup = struct.unpack("<d", fo.read(8)) return tup[0]
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def search_list(in_list, item): """Search for property in the input data Parameters ---------- in_list : list list of all the available properties item : str name of the property to search Returns ------- list list of index of the searched property """ r...
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def test_function_docs(arg): """ A function to test docs. :param arg: An argument. :return: A return value. """ return f"test_function_docs: {arg}"
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def add_old_flag(df): """ Mark all mechanisms which were originally evaluated in StatDP [1]. [1] Ding, Zeyu, Yuxin Wang, Guanhong Wang, Danfeng Zhang, and Daniel Kifer. "Detecting Violations of Differential Privacy." In Proceedings of the 2018 ACM SIGSAC Conference on Computer and Communica...
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import types def _bind(method, instance): """Bind a method to an instance. For details, see https://stackoverflow.com/a/37455782. Args: method (function): Method to be bound. Must accept ``self`` as first argument. instance (SomeClass): An instantiated class. Returns: Method...
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def parse_route_name_and_version(route_repr): """ Parse a route representation string and return the route name and version number. :param route_repr: Route representation string. :return: A tuple containing route name and version number. """ if ':' in route_repr: route_name, version =...
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def make_mount_string(mount, project): """ Return mount and project string used to specify storages """ return "{mount}/{project}".format(mount=mount, project=project)
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def conditional(data, c1, c2, out=None): """ Create a conditional probability table with counts data dataframe c1 condition as string c2 list of conditions as strings out output format. If None, counts are returned. If a function is passed, it is applied t...
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def _nzt(bt, zt, bt1, bt2): """Evaluate appropriate z-location for countersunk hole.""" if (bt - 0.5) < zt <= 0.5: zt1 = bt1 - 0.5 + (zt - bt + 0.5) * (1.0 - bt1) / (1.0 - bt) zt2 = bt2 - 0.5 + (zt - bt + 0.5) * (1.0 - bt2) / (1.0 - bt) else: zt1 = bt1 - 0.5 + (zt - bt + 0.5) * bt1 /...
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def job_runner(job): """ Run a job. Called in a Process pool. """ return job.run()
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def play_tictactoe_turn(action, state): """ Play a single turn of tictac toe. Returns the next person's turn and the new board_state given the input action. Input: action: 0-8, an index into the board array state: board_state: (0,1,0,None,None...
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def read_fake_mapping(fake_genome_mapping_filename): """ :param fake_genome_mapping_filename: fake genome mapping file :return: dict of fake position -> (chr, ref position) """ fake_map = {} with open(fake_genome_mapping_filename) as (f): for line in f: fake_pos, ref_chr, ref...
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from typing import Set from typing import List def compare_sets(curr: Set[str], prod: Set[str]) -> List[str]: """ Compares two sets of values and returns a list of items with "+" or "-" prefix indicating whether the value has been added or is missing in the second set compared to the first. Args: ...
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def determine_native_name(coreclr_args, base_lib_name, target_os): """ Determine the name of the native lib based on the OS. Args: coreclr_args (CoreclrArguments): parsed args base_lib_name (str) : root name of the lib target_os (str) : os to run tests on Return: (str) : nam...
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def bool_from_env_string(string: str) -> bool: """Convert a string recieved from an environment variable into a bool. 'true', 'TRUE', 'TrUe', 1, '1' = True Everything else is False. :param string: The string to convert to a bool. """ if str(string).lower() == 'false' or str(string) == ...
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def RTrim(text): """Strip spaces from the right of the text""" return str(text).rstrip()
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import torch def cxcywh_to_ltrb(boxes, as_tuple=False): """(center_x, center_y, width, height) -> (left, top, right, bottom) (已测试) :param boxes: shape(NUM/..., 4). (center_x, center_y, width, height) :param as_tuple: if True: return len(4 * shape(NUM/...,)). False: return shape(NUM/..., 4) :...
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def weight_path(model_path): """ Get path of weights based on path to IR Params: model_path: the string contains path to IR file Return: Path to weights file """ assert model_path.endswith('.xml'), "Wrong topology path was provided" return model_path[:-3] + 'bin'
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def off_diagonal(x): """ Return a flattened view of the off-diagonal elements of a square matrix. """ n, m = x.shape assert n == m return x.flatten()[:-1].view(n - 1, n + 1)[:, 1:].flatten()
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def sql_get_query_data(connection, query): """Runs SQL statement to get results of query specified, returned and pyodbc cursor. Args: connection: pyodbc.connect() object, Connection to use when selecting data query: string, Valid select statement Returns: ...
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def sanitize_name(s,new_char='_'): """ Replace 'unsafe' characters in HTML link targets Replaces 'unsafe' characters in a string used as a link target in an HTML document with underscore characters. Arguments: s (str): string to sanitize replace_with (str): string to replace 'unsaf...
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def merge(f_list): """ Merge two polynomials into a single polynomial f. Input: [f0, f1] A list of two polynomials Output: f A polynomial Format: Coefficient """ f0, f1 = f_list n = 2 * len(f0) f = [0] * n for i in range(n // 2): f[2 * i + 0] =...
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def make_taw_list(taw_tup): """ makes a list of all the taws used :param taw_tup: (begin_taw, end_taw, taw_step) :return: """ # upack begin_taw, end_taw, taw_step = taw_tup taw_list = [] for i in range(0, ((end_taw - begin_taw) / taw_step)): taw = begin_taw + (i * taw_step) ...
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def split_decimal(version_decimal): """Split a Decimal version number into numeric representations of its components. Args: version_decimal (Decimal): A Decimal containing an IATI version number. Returns: list of int: A list containing numeric representations of the Integer and Decimal com...
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def escalar(datos, margen_adicional=0, minimos=None, maximos=None): """ Recibe datos cuyos valores se encuentran en el intervalo [minimos, maximos], y los escala de forma que queden en el intervalor [0, 1]. Adicionalmente, puede especificarse un margen de seguridad, que amplía el intervalo entre [m...
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def rho_to_units(rho, ref_density=1250): """Convert dimensionless growth rate to real units for a growth process. Returns ------- density : number or numpy array (dtype float) Time in units (hours, days, etc.) Parameters ---------- rho : number or numpy array ...
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import re def parse_show_version(raw_result): """ Parse the 'show version' command raw output. :param str raw_result: vtysh raw result string. :rtype: dict :return: The parsed result of the show version command in a \ dictionary of the form: :: { 'version' : '',...
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def linear_distance(a: float, b: float) -> float: """ Returns the absolute difference between a and b """ return abs(a - b)
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def get_total_time_intersect(target_duration_dict_a: dict, target_duration_dict_b: dict) -> int: """Return sum of durations for targets in A that are also in B""" total_time = 0 for target in target_duration_dict_a.keys(): if target in target_duration_dict_b.keys(): total_time += target_...
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def get_stream_index(structure_pattern,structure_index): """ Translates the sequence of indices identifying an item in a hierarchy to the index identifying the same item in the flattened data stream. The structure indices must point to a value, not a list. >>> get_stream_index('..[[[.]..].].',[0]) ...
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import json def context_from_json_file(file_name): """ Load a json file into a dictionary. Parameters ---------- file_name: str Path to the json file. Returns dict Content of the file as dictionary. """ with open(file_name, encoding='utf-8') as json_file: ...
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def getMedian(laundry): """ Gets the median item in the given list. Args: laundry (list): Items to get middle item from. Returns: (Any): The median item in the list. """ length = len(laundry) if length == 0: return None median_index = int((length - 1) / 2) ...
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def format_timestamp(timestamp): """Returns a string representing a python datetime in LDAP timestamp format. :param timestamp: An "aware" datetime object :return: A timestamp in the format YYYYMMDDhhmmss-0700 (or -0800 in the winter) """ if timestamp.tzinfo is None or timestamp.tzinfo.utcoffse...
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def common_prefix(key, node_id): """Find the common prefix between two hex digit numbers Arguments: key {Hex String} node_id {Hex String} Returns: Integer -- Length of common prefix """ prefix = key while node_id[:len(prefix)] != prefix and prefix: prefix = ...
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import gzip import json def import_compressed_json(file_name): """Import gzip compressed JSON. :param file_name: Name of file to be read e.g. dict.json.gz :returns: JSON as a dictionary. """ with gzip.open(file_name, mode="rt") as f: return json.load(f)
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def encryption(msg): """Encrypts the message that the user inputs to the chatbot. Parameters ---------- msg : string String that the user inputs. Returns ------- encoded : string String containing the encoded message with 'Encoded Message: ' in front of it. ...
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import uuid def generate_stream_id(dtime): """ Get a string for use as a stream ID. The idea is to create a stream ID that is largely human-readable (hence the timestamp), and compact, but will not repeat if multiple packets are generated within a small timespan (within reason). To do this, w...
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import types def code_object_replace(code: types.CodeType, **kwargs) -> types.CodeType: """ Return a copy of the code object with new values for the specified fields. """ try: kwargs["co_consts"] = tuple(kwargs["co_consts"]) except ValueError: pass # Python 3.8+ if hasattr(...
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import math def arctan_z_term(z, term_index): """ Generates each term in Gregory-Leibniz series for arctan(z) """ term_power = (term_index*2+1) # Each term is raised to this power, and also divided by this value return (math.pow(z, term_power)/term_power)*((-1)**(term_index))
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import pickle def load_fragGC_pickle(inFH): """Loading fragGC info assuming a pickled python object produced by SIPSim fragGC. Parameters ---------- inFH : file handle Returns ------- fragGC object """ fojb = pickle.load(inFH) d = dict() for x in fojb: ...
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def samples_to_seconds(samples, rate): """Convert audio samples to seconds samples / samplerate.""" return samples / rate
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def print_rolls_nicely(rolls): """ This function prints the rolls in a more understandable way. """ def format_roll(name, values): """ This function prints a line in a prefined way. """ return "{: <10} {}".format(name, " | ".join([str(item) for item in values])) pr...
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def convert_bytes_to_str(message): """Convert bytes to str phrase """ return message.decode('utf8', 'ignore')
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def check_valid_role(role): """ Checks if the role is valid, return true if it is, and false otherwise. """ if role == 'patient' or role == 'administrator' or role == 'physician' or role == 'radiologist' or role == 'nurse' or role == 'technical support': return True else: return Fals...
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def difference(array, *lists): """Creates a list of list elements not present in the other lists. Args: array (list): List to process. lists (list): Lists to check. Returns: list: Difference of the lists. Example: >>> difference([1, 2, 3], [1], [2]) [3] ....
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def associate_by_user_id(backend, details, response, user=None, *args, **kwargs): """ Associate current auth with a user with the same Google user_id in the DB. """ if user: return None user_id = response.get('id') if user_id: # Try to associate accounts registered with the same...
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def remove_arg(args, arg, has_param=False): """Removes the first instance of the specified arg from the list of args. If the arg is present and has_param is set, also removes the parameter that follows the arg. :param list args: strings representing an argument list. :param staring arg: argument to remove fr...
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def value_in_list(answers, key, values): """Determine user's answer for the key is in the value list. Args: answer: Dict of user's answers to the questions. key: question key. values: List of values to check from. """ try: value = answers[key] return value in values except KeyError: re...
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def isType(node, typename): """Return True if node.type() is typename or any subclass of typename.""" return typename in node.nodeType(inherited=True)
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def apply_pct(record_list, win_pct): """ Inputs: record_list (binary list) - list containing wins (1) and losses (0) in every possible unique permutation win_pct (list) - list containing win percentage to be applied Returns: pcts_applied (list) - list with win/loss percentages appli...
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from typing import Dict def get_formatter(**kwargs) -> Dict[str,str]: """ Generates a formatter dict used for formatting filenames. Takes in kwargs of Dict[str,Any]. Does not keep lists, dicts and bools. Automatically filters out` .endswith('ated_at')` for animethemes-dl. Also adds `{video_fil...
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def match_type(obj, matchers): """Matches a given object using the given matchers list/iterable. NOTE(harlowja): each element of the provided list/iterable must be tuple of (valid types, result). Returns the result (the second element of the provided tuple) if a type match occurs, otherwise none i...
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