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def right_index_iter(shape): """Iterator for the right boundary indices of a structured grid.""" return range(shape[1] - 1, shape[0] * shape[1], shape[1])
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def remove_punctuations(text: str) -> str: """Remove non-space, non-alphanumeric characters from `text` Arguments: text {str} -- ex: 'It\'s 4:00am, you say?' Returns: str -- ex: 'Its 400am you say' """ unpunct = ''.join(t for t in text if t.isalnum() or t.isspace()) return unp...
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def summed_objective_func(inputs, module): """Function that sums the fprop output of a module.""" inputs = inputs.reshape(module.imsize) return module.fprop(inputs).sum()
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from pathlib import Path def traverse_path(path, split_idx): """ Generates a dictionary of the path to each country. Input: path: str. The path to the root directory split_idx: int. split point to capture country name. I.e. -2 splits one directory up. """ pathlist = Path(path).gl...
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def get_crop_margins(page, crop_percent, side='both'): """ Get the margins to remove from all sides using the crop_percent """ width, height = page.mediaBox.upperRight w_diff, h_diff = float(width) * (crop_percent / 2), float(height) * (crop_percent / 2) scale = (width / (width - w_diff * 2)) if sid...
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def facet_plot_dimensions(n_activities): """Returns dimension N of a N x N facet plot that fits n_activities. Args: n_activities (int): Number of activities to be plotted. Returns: int: The number of rows and columns to be used. """ return min(i for i in range(100) if i**2 >= n_act...
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def iscomplex(pscale): """ Returns whether pscale is an instance of a complex number """ return isinstance(pscale, complex)
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def _get_word_weight(word, word_freq_map, a=1e-3): """ Computes SIF weight (Arora et al. 2017) :param word: input word :param word_freq_map: dict containing word: word freq. :param a: weight parameter :return: SIF weight for the word """ word_freq = word_freq_map.get(word, 0.0) retur...
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def render_text(content): """ a simple renderer for text documents: replace new lines with <br> """ return "<br>".join(content.splitlines())
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def NeededPaddingForAlignment(value, alignment=8): """Returns the padding necessary to align value with the given alignment.""" if value % alignment: return alignment - (value % alignment) return 0
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def _detect_faces_helper(face_client, image_url): """Detect Faces Helper. This will detect the faces found in the image with url image_url using the provided FaceClient instance and return the faces identified in an image. """ detected_faces = face_client.face.detect_with_url(url=image_url) if not...
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def as_int(text, default=None, base=10): """Parse the specified value as an integer.""" try: return int(text, base) except (ValueError, TypeError): return default
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def get_prop_cen_z_offset(class_str): """Get the proposal z centroid offset depending on the class. """ if class_str == 'Car': offset = 2.17799973487854 elif class_str == 'Pedestrian': offset = 0.351921409368515 elif class_str == 'Cyclist': offset = 0.8944902420043945 el...
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def merge(new_items, into_list): """ Appends items from `new_items` into `into_list`, only if they are not already there. :param new_items: :param into_list: :return: """ at_least_one_added = False for item in new_items: if item not in into_list: into_list.append(item...
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import re def LoopTemplate(s, ctx): """Minute templating language: use like str.format, so LoopTemplate("{one}", dict(one="1")) => "1", but also supports {loop people}{name}{endloop} which loops over an iterable in the context and processes the inside as a subtemplate with the next ite...
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def count_consonants(string: str) -> int: """ Counts the number of consonants in the given string :param string: String to count :return: int Example: >>> count_consonants("Hello World") >>> 7 """ return sum(1 for char in string if char.lower() in 'bcdfghjklmnpqrstvwxyz')
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import torch def set_intersection(tensor1, tensor2): """Intersection of elements present in tensor1 and tensor2. Note: it only works if elements are unique in each tensor. """ aux = torch.cat((tensor1, tensor2), dim=0) aux = aux.sort()[0] return aux[:-1][(aux[1:] == aux[:-1]).detach()]
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import decimal def integer_squareroot(value: int) -> int: """ Return the integer square root of ``value``. Uses Python's decimal module to compute the square root of ``value`` with a precision of 128-bits. The value 128 is chosen since the largest square root of a 256-bit integer is a 128-bit inte...
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def sparseFeature(feat, feat_num, embed_dim=4): """ create dictionary for sparse feature :param feat: feature name :param feat_num: the total number of sparse features that do not repeat :param embed_dim: embedding dimension :return: """ return {'feat': feat, 'feat_num': feat_num, 'embed...
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def parse_test_names(test_name_args): """Returns a dictionary mapping test case names to a list of test functions :param test_name_args: The parsed value of the ``--test`` or ``--skip`` arguments :return: None if ``test_name_args`` is None, otherwise return a dictionary mapping test case n...
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def tibetan_month(date): """Return 'month' element of a Tibetan date, date.""" return date[1]
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import torch def make_circle_masks(n, h, w): """ Create circle mask on a grid of size (h, w). Center and radius chosen randomly from [-0.5, 0.5] and [0.1, 0.4] respectively (for grid scale of [-1, 1]). Parameters ---------- n: int Number of channels to create mask for. h: int ...
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def DFS(graph, source=None, key=None): """ An Impelemetaion of depth-first-search for tranversing a graph of getting a node. Parameters ---------- source:int, str, float, optional Value of the node to start the tranverse. if ommited the method uses the first node in the graph as...
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def ord_val(lex_id: str) -> int: """Parse the ordinal value of a lexical id. The ordinal value is the position in the sequence, from repeated calls to next_id. >>> ord_val("0098") 98 >>> ord_val("0099") 99 >>> ord_val("0100") 100 >>> ord_val("11000") 1000 >>> ord_val("1...
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def ndim(x): """ returns number of dimensions for tensor """ return len(x.get_shape())
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def remove_s_mean(data, mean): """Remove the spatial mean of a time series matrix """ n = min(data.shape[0],data.shape[1]) for i in range(0, n): if data.shape[0]==n: data[i] -= mean[i] else : data[:,i] -= mean[i] return data
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def get_default_order(view): """ Get default sort order from model view. Returns (field, desc) tuple. :param view: View instance """ if view.column_default_sort: if isinstance(view.column_default_sort, tuple): return view.column_default_sort ...
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def is_collection(value) -> bool: """ Check if value is a collection """ return any([isinstance(value, list), isinstance(value, set), isinstance(value, tuple)])
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def find_nearest_index(vertices, x_from, y_from, vertice_count): """ Find the index of the vertex that is the closest to specified coordinate (x_from, y_from). """ min_distance_squared = 1000000 nearest_index = 0 x_from *= 1000 y_from *= 1000 for index, vertice in enumerate(vert...
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def total_time(boutlist): """Takes list of times of bouts in seconds, returns it's last item representing the total trial time.""" total_time = boutlist[-1] return total_time
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def coc_accepted(post, config): """ Verifies that the user is in the Redis set "accepted_CoC". :param post: the Comment object containing the claim. :param config: the global config dict. :return: True if the user has accepted the Code of Conduct, False if they haven't. """ return c...
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def parse_file(file_name): """ Parses file generated by the filtering script :param file_name: :return: nested list of all counts, nested list of gene IDs/symbols, list of sample names """ all_counts = [] gene_names = [] with open(file_name, "r") as file: header = next(file) ...
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def scale_to_total(value): """\ Convert a mapping of distinct quantities to a mapping of proportions of the total quantity. """ total = float(sum(value.values())) return {k: (v / total) for k, v in value.items()}
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def _get_num_annos(id2gos): """Return the number of annotations found in id2gos""" num = 0 for gos in id2gos.values(): num += len(gos) return num
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def key_values_to_dict(kvs): """ Given a list with key values in form `Key=Value` it creates a dict from it. """ my_dict = {} for kv in kvs: k, v = kv.split("=") my_dict[k] = v return my_dict
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def bin_centers(bin_edges): """Return array of bin centers given an array of bin edges""" return (bin_edges[1:] + bin_edges[:-1]) / 2.0
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def lines_get_first_line(lines: str) -> str: """Return the first non-empty line in lines.""" return lines.strip().splitlines()[0]
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def class_is_abstract(node): """return true if the given class node should be considered as an abstract class """ for method in node.methods(): if method.parent.frame() is node: if method.is_abstract(pass_is_abstract=False): return True return False
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def guess_spatial_dimensions(image): """Make an educated guess about whether an image has a channels dimension. Parameters ---------- image : ndarray The input image. Returns ------- spatial_dims : int or None The number of spatial dimensions of `image`. If ambiguous, the v...
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def exponenciacao(base, expoente): """ Implementação de um algoritmo de exponenciação. Argumentos: base: int. Base da operação expoente: int. Expoente da operação. Retorna o resultado da operação de exponenciação """ result = base for _ in range(0, expoente - 1): re...
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def pdb_names2list(pdb_files_textfile): """ Convert a file that contains names in each line into an element of a list Args: pdb_files_testfile (str) : Full / relative path to the text file Returns: A List where the i^(th) element is the i^(th) line in the test file """ ...
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def inc(x): """ Increments the value of x >>> inc(4) 5 """ return x + 1
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def title_case(sentence): """ Convert a string to title case. Parameters ---------- sentence : str String to be converted to title case Returns ------- title : str Sentence converted to title case Example ------- >>> title_case("string to be coNverted") 'String To Be Converted' """ words = sen...
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def create_lm_inputs_labels(dataset, vocab): """Create inputs and labels for language modelling.""" decode_id = vocab.decode_id end_id = vocab.end_id inputs = [[decode_id] + vocab.lookup(seq) for seq in dataset] labels = [vocab.lookup(seq) + [end_id] for seq in dataset] return inputs, labels
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import re def is_valid_username(username): """A username is valid if it fulfills the following conditions: - Contains at least 8 characters and at most 12 characters - Only contains letters from A to Z, a to z and digits from 0 to 9 - Contains at least one digit - Must start with a capital letter ...
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import torch import pickle def load_model_training(path, epoch, ac, ac_targ, pi_optimizer, q_optimizer): """Load the model and all things necessary for continueing the training. Args: path (str): Path to the directory of checkpoints to save epoch (int): Current epoch number ac: A...
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from typing import List from typing import Any def shard_list(alist: List[Any], shard_count: int) -> List[List[Any]]: """Breaks the list up into roughly-equally sized shards. Args: alist: A list of things. shard_count (int): The total number of shards. Returns: List[List[Any]]: T...
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from typing import Union from typing import List from typing import Any from typing import Dict def _textfsm_to_dict( structured_output: Union[List[Any], Dict[str, Any]], header: List[str] ) -> Union[List[Any], Dict[str, Any]]: """ Create list of dicts from textfsm output and header Args: str...
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def create_task_options_doc(task_options): """Generate the 'Options' section for a given tasks documentation""" doc = [] for option in task_options: usage_str = option.get("usage") if usage_str: doc.append(f"\n``{usage_str}``") if option.get("required"): doc....
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def _serializeExclude_eval(parentUnit, priv): """ Always decide not to serialize obj :param priv: private data for this function first unit of this class :return: tuple (do serialize this object, next priv, replacement unit) """ # do not use this :class:`hwt.synthesizer.unit.Unit` instance and...
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from typing import Tuple def parse(args: Tuple[str, str, str]) -> Tuple[str]: """Parser for single register instructions.""" return (args[2],)
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def fractional_part(numerator, denominator): """The fractional_part function divides the numerator by the denominator, and returns just the fractional part (a number between 0 and 1).""" if denominator != 0: return (numerator % denominator) / denominator return 0
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def _get_content(filepath): """Return contents of filepath""" return open(filepath, 'r').read()
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def size_of_varint_1(value): """ Number of bytes needed to encode an integer in variable-length format. """ value = (value << 1) ^ (value >> 63) res = 0 while True: res += 1 value = value >> 7 if value == 0: break return res
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from typing import List from typing import Union from typing import Dict def _result_values_to_dict(treeview_headers: List[str], result_values: List[Union[int, str, float]]) -> Dict[str, Union[int, str, float]]: """ Turn value list into a dict according to the keys based on treeview...
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def allslots(cls: type): """ Get slots tuple for all the MRO of class `cls' in right («super-to-sub») order. """ return tuple(j for i in cls.mro()[::-1] if hasattr(i, '__slots__') for j in i.__slots__)
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def trim_suffix(text, suffix): """Strip a suffix from text, if it appears (otherwise return text unchanged)""" if not text.endswith(suffix): return text return text[: len(text) - len(suffix)]
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def initialize_distribution(states, actions): """ initialize a distribution memory :param states: a list of states :param actions: a list of actions :return: a dictionary to record values """ dist = {} for i in states: dist[i] = {} for j in actions: dist[i][j...
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def first_not_none(iterable): """Select the first item from an iterable that is not None. The idea is that you can use this to specify a list of fall-backs to use for configuration options. """ for item in iterable: if item is not None: return item return None
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def splitdate(yyyymmddhh): """ yyyy,mm,dd,hh = splitdate(yyyymmddhh) give an date string (yyyymmddhh) return integers yyyy,mm,dd,hh. """ yyyy = int(yyyymmddhh[0:4]) mm = int(yyyymmddhh[4:6]) dd = int(yyyymmddhh[6:8]) hh = int(yyyymmddhh[8:10]) return yyyy,mm,dd,hh
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def humanize_time(secs): """ Convert seconds to hh:mm:ss format. """ secs = int(secs) mins, secs = divmod(secs, 60) hours, mins = divmod(mins, 60) return '{h:02d}:{m:02d}:{s:02d} (hh:mm:ss)'.format(h=hours, m=mins, s=secs)
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def Horner(betas, t): """Use Horner's method to evaluate a polynomial. betas: coefficients in decreasing order of power. t: where to evaluate """ total = 0 for beta in betas: total = total * t + beta return total
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import functools def returns_true_or_raises(f): """A safety net. Decorator for functions that are only allowed to return True or raise an exception. Args: f: A function whose only expected return value is True. Returns: A wrapped functions whose guaranteed only return value is T...
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def get_accuracy(true_positives, true_negatives, false_positives, false_negatives): """ The accuracy is the ability to correctly predict the class of an observation. Args: true_positives: amount of items that have correctly been identifies as positives true_negatives: amount of items that h...
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import pickle def load_pickle_files(path='Data'): """ Loads the pickle files with the prepared Data :param path: path to the pickle files :return: np.arrays of the prepared data """ with open(f'{path}/champion.pickle', 'rb') as file_champion, open(f'{path}/enemy.pickle', 'rb') as file_enemies,...
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def _FlagIsExplicitlySet(args, flag): """Return True if --flag is explicitly passed by the user.""" return hasattr(args, flag) and args.IsSpecified(flag)
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import torch def to_4D_image(image: torch.Tensor) -> torch.Tensor: """Convert `image` to 4D tensors (b, c, h, w) Args: image (torch.Tensor): 2/3/4D image tensor 2D: (h, w) 3D: (c, h, w) 4D: (b, c, h, w) Returns: torch.Tensor: 4D image tensor """ ndims = len(image.shape) asser...
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def replace_periods(dict_val, replace_with='_'): """ Recursively replace "." fonud in keys in the given dict with the value of replace_with """ facts = dict() for k, v in dict_val.items(): if '.' in k: if replace_with: k = k.replace('.', '_') if is...
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def format_amount(amount: float = 0.00) -> str: """ Convert to number with 2 decimal (string type) e.g. - 10.23 => "10.23" - 10 => "10.00" - 1337.1337 => "1337.13" - 1337.1387 => "1337.14" :param amount: :return: """ result = "{0:.2f}".format(amount) return result
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def pstrip(s, prefix): """Prefix strip >>> pstrip('foo_oof', 'foo_') 'oof' >>> pstrip('baroof', 'foo_') 'baroof' """ i = len(prefix) if s[:i] == prefix: return s[i:] return s
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def update_email(email): """Make email addresses, upper-case.""" return email.upper()
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import math def kl_divergence(ps, qs): """ Calculates the relative entropy of distribution of ps to qs """ rel_entropy = 0.0 for (p,q) in zip(ps, qs): if p > 0: rel_entropy += p*math.log(p/q, 2) return rel_entropy
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def frequency_bands(f,Y): """Process to obtain the values for each frequency band. Parameters ---------- f : list Frequency bins for given FFT parameters. Y : ndarray Array of values from which we divide into frequency bands. Returns ------- delta : array Ar...
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import struct def _replace_header_size(raw_header: bytes, header_size: int) -> bytes: """Replace the 'header_size' field in a raw header.""" header_size_bytes = struct.pack("<I", header_size) return raw_header[: 8 + 4] + header_size_bytes + raw_header[8 + 4 + 4 :]
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def get_r_env(A_env, A_A): """床面積の合計に対する外皮の部位の面積の合計の比 (7) Args: A_env(float): 外皮の部位の面積の合計 (m2) A_A(float): 床面積の合計 (m2) Returns: float: 床面積の合計に対する外皮の部位の面積の合計の比 """ return A_env / A_A
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def transpose(matrix): """ IMPORTANT: You should only use list comprehension for this question. Follow the syntax guidelines in the writeup. Takes in a list of lists representation of a matrix and returns its transpose, also as a list of lists. >>> arr1 = transpose([[1,2,3],[4,5,6],[7,8,9]]) ...
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import torch def make_features(batch, side, data_type='text'): """ Args: batch (Tensor): a batch of source or target data. side (str): for source or for target. data_type (str): type of the source input. Options are [text|img|audio]. Returns: A sequence of src/t...
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def check(plays, winning_numbers): """Check if the given plays match any of the winning numbers: * plays is a list of powerball play tuples. * winning_numbers is a powerball play tuple. A powerball play tuple contains a list of 5 numbers followed by a powerball number. e.g. ([6, 20, 21, 52, 55], 2...
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def compute_metrics(qids_to_relevant_documentids, qids_to_ranked_candidate_documents, exclude_qids): """Compute MRR metric Args: p_qids_to_relevant_documentids (dict): dictionary of query-document mapping Dict as read in with load_reference or load_reference_from_stream p_qids_to_ranked_cand...
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def prepare_data(*, data, x_name, y_name): """Change format from {"algo": ..., "algo_name": ..., "metrics": dict} to (algo, instance, x, y).""" res = [] for met in data: res.append( ( met["algo"], met["algo_name"], met["metrics"][x_name], ...
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def findAnEven(l): """ Assumes l is a list of ints Returns the first even num in l Raises ValueError if l doesn't contain an even num """ first_even_n = 0 for num in l: if num % 2 == 0: first_even_n = num break if first_even_n == 0: raise ValueError("l doesn't contain an eve...
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from typing import List def levenshtein_distance(s1: str, s2: str) -> int: """Return the Levenshtein distance between two strings, using the Wagner-Fischer iterative algorithm. This function is based on code from https://github.com/toastdriven/pylev: Copyright (c) 2012, Daniel Lindsley All right...
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import hashlib def md5(file_path, save_md5=True, md5_path=None): """ It generates the MD5 code of the input file. It saves the code into a file if it save_md5 is True. It saves the code into the text file of 'md5_path'. If md5_path is None, the name of the file is the same as the input file wi...
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def count_text_lines(txt_file): """Get number of lines in a text file Args: txt_file: txt file to count Return: int, the number of lines in the input file """ f = open(txt_file, "r") lines = f.readlines() f.close() return len(lines)
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import math def combined_rank(R_k): """Compute the combined habitats ranks as described in equation (3) Inputs: - R_k: the list of ranks Output: - R_hab as decribed in the user guide's equation 3.""" R = 4.8 -0.5 *math.sqrt( (1.5 *max(5-R_k))**2 + \ ...
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def count(sequence, condition=None): """ Returns number of item in a sequence satisfying given condition. Args: sequence: iterable Sequence of items to go through. condition: callable or None Condition to test. Returns: int N...
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def isc_1km_to_250m ( i_sc_1km ) : """ return the 250m grid index cross track of a 1km pixel """ return 4. * i_sc_1km
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def get_row(csr, row): """returns row from csr matrix: indices and values.""" start = csr.indptr[row] end = csr.indptr[row + 1] return csr.indices[start:end], csr.data[start:end]
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def get_zone_id(route53, domain): """Return the hostid for a domainname.""" # return jsondata['HostedZones'][] response = route53.list_hosted_zones() search_domain = domain + "." for i in range(len(response['HostedZones'])): if response['HostedZones'][i]['Name'] == search_domain: ...
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import ipaddress def is_valid_ip(ip_address): """ Check Validity of an IP address """ try: ip = ipaddress.ip_address(u'' + ip_address) return True except ValueError as e: return False
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from networkx.readwrite import json_graph import json def load_graph(json_name): """ Args: json_name: json file name Returns: networkx graph """ with open(json_name, 'r') as f: data = json.load(f) f.close() graph = json_graph.node_link_graph(data) print('Loade...
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def is_even(x): """ Determines if x is even """ return x % 2 == 0
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def _get_frozen_unfrozen(tensorstore_metadata): """Returns two lists with the names of axes that are frozen and unfrozen.""" frozen = [] unfrozen = [] for axis_name in tensorstore_metadata['axes']: if axis_name in tensorstore_metadata['axesWrap']: wrapped_axes = tensorstore_metadata['axesWrap'][axis_n...
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def crc8(b, crc): """ Updates a CRC8 value with a new byte. """ b2 = b if (b < 0): b2 = b + 256 for i in range(8): odd = ((b2 ^ crc) & 1) == 1 crc >>= 1 b2 >>= 1 if (odd): crc ^= 0x8C return crc
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def get_feature_type( feature_text: str) -> str: """ Args: feature_text: endswith '\n' For example: ' CDS complement(12..2189) ' /gene="rIIA" ' /locus_tag="T4p001" ' ...
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def is_iterable( x ): """Check if x is an iterable object""" return hasattr( x, '__iter__' )
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def compare_overlaps(context, synsets_signatures, nbest=False, keepscore=False, normalizescore=False): """ Calculates overlaps between the context sentence and the synset_signture and returns a ranked list of synsets from highest overlap to lowest. """ overlaplen_synsets = [] # ...
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from typing import Any def ignore_if_not_confirmed(answers: dict[str, Any]) -> bool: """Ignore if not confirmed question.""" return not answers["confirmation"]
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def strip_extra_spaces(input_string): """ Removes extra spaces from input string >>> strip_extra_spaces("I have no cats") 'I have no cats' """ while " " in input_string: input_string = input_string.replace(" ", " ") return input_string
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from typing import Union from typing import Type from typing import Any import inspect def is_method(item: Union[object, Type[Any]], attribute: Any) -> bool: """Returns if 'attribute' is a method of 'item'.""" if isinstance(attribute, str): try: attribute = getattr(item, attribute) ...
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