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def get_array_of_field_values_matching(field_names, matchop, collection_obj): """Returns an array with all values the given field takes in all documents matched by the given Matchop in the given collection.""" push_dict = {field_name : "$" + field_name for field_name in field_names} agg_pipe = [ ...
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def partition_label_unlabeled(train_data_vector,label_dict): """ To segregate training data into labeled and non labeled based on fraction """ for index in range(len(train_data_vector)): if ("unknown" in label_dict.keys()): if (train_data_vector[index][-1]==label_dict["unknown"]):...
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import re def to_valid_key(name): """ convert name into a valid key name which contain only alphanumeric and underscores """ valid_name = re.sub(r'[^\w\s]', '_', name) return valid_name
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def get_minimum(poly, search_range=None): """ Get the minimum values of a polynomial. parameters: =========== - poly: np.poly1d instance - search_range: list of size 2 Should contain the minimum and maximum search range in index 0 and 1 (respectively) returns: =======...
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import math def myround(x, base, choice=None): """ Round values to the nearest base :type x: float :param x: value to round :type base: int :param base: nearest number to round to :type choice: str :param choice: 'up' to round up, 'down' to round down, or None for nearest """ ...
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import sys def detect_codec(data: bytes, codecs: tuple = (('utf-32-le', 4), ('utf-16-le', 2))) -> tuple: """Attempt to detect codec of data. Returns codec string and corresponding code point length.""" for values in codecs: codec, cp_len = values ...
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def fix_sqltype(sqltype): """Fix `sqltype` string. Force uppercase string and change 'FLOAT' -> 'REAL'. Parameters ---------- sqltype : str Returns ------- st : string """ st = sqltype.upper() if st == 'FLOAT': st = 'REAL' return st
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def add_text_generate_args(parser): """Text generation arguments.""" group = parser.add_argument_group(title='text generation') group.add_argument("--temperature", type=float, default=1.0, help='Sampling temperature.') group.add_argument("--greedy", action='store_true', default=F...
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from typing import Callable from typing import Iterable def zip_with(func: Callable, *iters) -> Iterable: """`zip` all the iters and apply function `func` to each of them """ return map(func, zip(*iters))
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def decode_variable_integer(bytes_input: bytes): """ If the length is fitting in 7 bits it can be encoded in 1 bytes. If it is larger then 7 bybitstes the last bit of the first byte indicates that the length of the lenght is encoded in the first byte and the length is encoded in the following bytes....
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import torch def get_corr_together(fake_ys, y): """ Args: fake_ys (torch.Tensor): with shape (n_results, n_sample,). y (torch.Tensor): with sample (n_sample,). Returns: corr (torch.Tensor): with shape (n_result,) """ # 转置不转置速度相同 fake_y_mean = torch.mean(fake_ys, dim...
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import io def txt_only_abstract_reader(filepath): """ Use this method to read ONLY an abstract from file :param filepath: :return: a list of abstract """ result = [] with io.open(filepath, "r", encoding="utf-8") as f: lines = f.readlines() for line in lines: if ...
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from pathlib import Path import os import sys def check_target_type(target, filetype): """Validate path and file / directory type. It also returns the appropritate fio command line parameter based on the file type. """ keys = ["file", "device", "directory", "rbd"] test = {keys[0]: Path.is_fi...
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def _king_black_limit(square): """ 白方田字格限制 :param square: :return: """ return square in [66, 67, 68, 75, 76, 77, 84, 85, 86]
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def control_char_symbol(c: str) -> str: """Returns one of the Unicode Control Picture characters (e.g. '␛') for the given single-character string with an ord() less than 32. Raises ValueError for invalid strings. """ if len(c) != 1 or ord(c) >= 32: raise ValueError('Argument must be a singl...
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import random import torch def random_channel_mask(stage_repeats=None, stage_out_channels=None, candidate_scales=None, select_all_channels=False): """ candidate_scales = [0.2, 0.4, 0.6, 0.8, 1.0, 1.2, 1.4, 1.6, 1.8, 2.0] """ if stage_repeats is None: stage_repeats = [4,...
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def tf(tokens): """ Compute TF Args: tokens (list of str): input list of tokens from tokenize Returns: dictionary: a dictionary of tokens to its TF values """ d = {} for token in tokens: if token in d: d[token] += 1 else: d[token] = 1 t...
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def sys_encoding(): """Charset to use for --file <path>|- (stdin)""" return 'utf8'
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def insert_timestamp_single_row_csv(header: bytes, rows_list: list, time_stamp: bytes) -> bytes: """ Inserts the timestamp field into the header of a csv, inserts the timestamp value provided into the first column. Returns the new header string.""" header_list = header.split(b",") header_list.inser...
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def converted_tests(): """Example of pytest-json report output converted to Mig3 spec.""" return [{"module": "tests/test_converter.py", "test": "test_simple_convert"}]
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def setup_1(): """Setup test 1.""" list0 = [i for i in range(10)] list1 = [i + 0.5 for i in range(5, 20)] list1[3] = 8 return list0, list1
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import collections def _make_skew_prows(grid): """ 0 1 2 3 6 7 4 5, "right init" """ Ncore, Nrow, Ncol = grid chips_per_pcol = Ncore * Nrow out = [] for i in range(Ncol): col = collections.deque(range(i * chips_per_pcol, (i + 1) * chips_per_pcol)) col.rotate(Ncore * i) out += tuple(col) re...
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def extract_by_index(a_list, indices): """ Creates a list that consists of the elements at the given indices of the given list. :param a_list: The list to get elements from. :param indices: The indices to use to source elements. :return: The selected list. """ retur...
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def next_turn(events): """ list of (turn, move, returnvalue) return returnvalue where turn is smallest, on tie move is largest """ return sorted(events, key=lambda tup: (tup[0], -tup[1]))[0][2]
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def index_to_factoradic(value, num_elem=None): """ Convert the int:index to a factoradic representation in a list, indexed 0 to n-1 Args" value: the integer to convert to mixed radix format num_elem: Ignored. For API compatability with `factoradic_to_permutation`. Returns: """ remai...
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def is_prime(integer): """Determines weather integer is prime, returns a boolean value""" # add logic here to make sure number < 2 are not prime for i in range(2, integer): if integer % i == 0: return False return True
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def filter_noncruising(trip_list, keep_only_driving=False, keep_all_fhv=True, silent=True): """Removes trips labeled as 'not_cruising' after classification. trip_list [list]: a list of dicts in JSON format. keep_only_driving [bool]: should segments not identified as 'driving' be dropped fro...
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def batch_get_similarity_matrix(ref, target): """ Get pixel-level similarity matrix. :param ref: (batchSize, num_ref, feature_dim, H, W) :param target: (batchSize, feature_dim, H, W) :return: (batchSize, num_ref*H*W, H*W) """ (batchSize, num_ref, feature_dim, H, W) = ref.shape ref = ref....
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def fallbackSeries(requestContext, seriesList, fallback): """ Takes a wildcard seriesList, and a second fallback metric. If the wildcard does not match any series, draws the fallback metric. Example: .. code-block:: none &target=fallbackSeries(server*.requests_per_second, constantLine(0)) ...
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import inspect def get_class_property_names(obj: object): """Returns the names of all properties of a class.""" return [ p[0] for p in inspect.getmembers(type(obj), inspect.isdatadescriptor) if not p[0].startswith("_") ]
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def get_most_popular_drugs(nonzero_df): """ Get the top 3 drugs that are used by patients. Input ----- df: pandas.DataFrame The dataframe containing patients with positive response to treatments Returns ------- popular_df: pandas.DataFrame The dataframe containing t...
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def c_to_f(temp): """ Convert celcius temperature to fahrenheit. """ return temp * 1.8 + 32
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import string import secrets def generate_password(length=12): """Generates a random password Args: length (int, optional): Length of the generated password. Defaults to 12. Returns: str: The output generated password """ req_str = string.ascii_letters + string.digits secure...
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import yaml def read_yaml(config_name, config_path): """ config_name:需要读取的配置内容 config_path:配置文件路径 """ if config_name and config_path: with open(config_path, 'r', encoding='utf-8') as f: conf = yaml.safe_load(f.read()) if config_name in conf.keys(): return co...
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def get_current_session(request, hproPk): """Get the current session value""" retour = {} base_key = 'plugit_' + str(hproPk) + '_' for key, value in request.session.iteritems(): if key.startswith(base_key): retour[key[len(base_key):]] = value return retour
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def p_second_half(spec, clip_left2, clip_right2, top, f21, pmax, p, f): """Interpolate the second half of the triangle""" df2 = top / f21 diff = f[2] - p - 1.0 if not clip_left2: spec[p] += (f21 - diff) * (diff + f21) * 0.5 * df2 else: spec[p] += (diff + 0.5) * df2 p += 1 ...
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def max_run(_b, _x): """Determine the length of the maximum run of b's in vector x. Parameters ---------- b: int Integer for counting. x: array Vector of integers. Returns ------- max: int Length of maximum run of b's. """ # Initialize counter _max ...
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def mock_cavatica(mocker, settings): """ Mocks out project setup functions """ settings.CAVATICA_HARMONIZATION_TOKEN = "testtoken" settings.CAVATICA_DELIVERY_TOKEN = "testtoken" cavatica = mocker.patch("creator.studies.schema.django_rq.enqueue") return cavatica
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import os def test_env(): """ Check if the environment has the right variables set """ unset = set() for i in ('HOME', 'PATH', 'TERM'): if not os.environ.get(i): unset.add(i) if unset: variables = ', '.join('$%s' % i for i in unset) print('ERROR: %s not set'...
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import json def translate(key, lang='fr'): """ Une fonction de traduction """ with open('langs.json') as fichier: trans = json.load(fichier) mot_cle = trans.get(key) if mot_cle: return mot_cle.get(lang) \ if mot_cle.get(lang) else mot_cle else: return key
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def flatten_output_shape(input_shape, options=None): """Flatten operation input to output shape conversion""" return (int(input_shape[0]), int(input_shape[1] * input_shape[2] * input_shape[3]))
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def ssh_cmd_container_instance(detail) -> str: """SSH command to access a ecs2 instance by id.""" return f"TERM=xterm ssh {detail['ec2InstanceId']}"
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def get_tmin_tmax(ct_idx, chop_times, sfreq): """ Get tmin and tmax for the chop interval based on the time points given by chop_times. Parameters: ----------- ct_idx : int Index corresponding to chop_times. chop_times : list of float List with the time points of when to cho...
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def uniform(destinations): """ Create a uniform distribution for given destinations. destinations: iterable of states """ count = len(destinations) mod = 100 % count prob = 1/count dist = {i: prob for i in destinations} last = destinations[-1] dist[last] = dist[last] + 0.01*mod ...
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import time def datetime2ts(dt): """ Convert a `datetime` object to unix timestamp (seconds since epoch). """ return int(time.mktime(dt.timetuple()))
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def sreprlow(s): """Squash unicode and return the repr() of string `s` as lower case.""" return repr(str(s)).lower()
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def file_from_list_of_images(file_list, current_file, request): """return filename from file_list depends of request request: position on the list """ if file_list: if request == "first": file = file_list[0] elif request == "previous": position = file_list.index(c...
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def FormatThousands(value): """Format a numerical value, inserting commas as thousands separators. Args: value: An integer, float, or string representation thereof. If the argument is a float, it is converted to a string using '%.2f'. Returns: A string with groups of 3 digits before the decimal po...
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import time import subprocess def run_command(cmd,argslist=None,dir='.'): """ runs a command in the shell cmd: executable args: array of arguments dir: the directory to run executable returns: time(ms), subprocess object, stdout """ start_time = time.time() if argslist...
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def get_ligand_filetype(ligand_filename): """Returns the filetype of ligand.""" if ".mol2" in ligand_filename: return "mol2" elif ".sdf" in ligand_filename: return "sdf" elif ".pdbqt" in ligand_filename: return "pdbqt" elif ".pdb" in ligand_filename: return "pdb" else: raise ValueError("...
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def list_of(type): """Return to_list such that to_list([x0, x1, ...]) returns [type(x0), type(x1), ...]. """ def to_list(x): return [type(e) for e in x] return to_list
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import sys def validate_tagname(repo, tagname): """Try to find a given tagname in a repo's tags. If no tagname is given, find the youngest tag. Return a dict containing tag name and tag date """ print('Fetching tags...') tags = repo.get_tags() tag_list = [] for t in tags: tag...
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def starfilter(pred, iterable): """ Analogous to starmap from the itertools module, but wrt. filter. Basic functionality only. :param pred: :param iterable: :return: """ if pred is None: return filter(None, iterable) def new_pred(args): return pred(*args) return fi...
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def _check_value(value): """Convert the provided value into a boolean, an int or leave it as it.""" if str(value).lower() in ["true"]: value = True elif str(value).lower() in ["false"]: value = False elif str(value).isdigit(): value = int(value) return value
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def getdiffmeta(diff): """get commit metadata (date, node, user, p1) from a diff object The metadata could be "hg:meta", sent by phabsend, like: "properties": { "hg:meta": { "date": "1499571514 25200", "node": "98c08acae292b2faf60a279b4189beb6cff1414d", "u...
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def mergesort(list, descending=False): """ Takes in a list as an argument, and sorts it using a "Merge Sort"-algorithm. --- Args: - list (list): The list to be sorted - descending (bool): Set true if the list be sorted high-to-low. Default=False Raises: - TypeError:...
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import argparse def getCommandLineArgs(): """ Process the command line arguments """ parser = argparse.ArgumentParser(prog="ccvalidator", description="Validate and determine the issuer of a given credit card number") parser.add_argument("card_num", help="Credit card number") return parser...
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def GetUniqueSessionID(process_obj): """ Create a unique session identifier. params: process_obj: lldb.SBProcess object refering to connected process. returns: int - a unique number identified by processid and stopid. """ session_key_str = "" if hasattr(process_obj, "...
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import re from datetime import datetime def clean_title_input(title, draft=False): """Convert a string into a valide Jekyll filename. Remove non-word characters, replace spaces and underscores with dashes, and add a date stamp if the file is marked as a Post, not a Draft. Args: title (string...
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def _find_node(state, node_id_or_label): """ Finds a node according to its ID (if integer is provided) or label (if string is provided). :param node_id_or_label Node ID (if int) or label (if str) :return A nodes.Node object """ if isinstance(node_id_or_label, str): for n i...
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def _subsample( X, ind): """ like X[ind,:] but works in case X has size (n,) """ if X.ndim == 1: y = X[ind] elif X.ndim == 2: y = X[ind,:] else: raise ValueError("Expected 1D or 2D array") return y
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def _make_task_name(cls, addons=None): """Makes a pretty name for a task class.""" base_name = ".".join([cls.__module__, cls.__name__]) extra = '' if addons: extra = ';%s' % (", ".join([str(a) for a in addons])) return base_name + extra
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def _test2(num1, num2): """Sample function for TestCase. Returns the supplied values. Args: num1: number 1 num2: number 2 Returns: float: sum of number 1 and 2 """ return float(num1) + float(num2)
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import six def collect_namespaces(root_spec): """Constructs a set of namespaces in a given ElementSpec. Args: root_spec: An `ElementSpec` for the root element in the schema. Returns: A set of strings specifying the names of all the namespaces that are present in the spec. """ findable_namespac...
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def school2nation(id_num): """ Takes school id, returns nation id of the school. """ if id_num < 97100000: return id_num // 100000 * 10000 if id_num < 97200000: return 7240000 if id_num < 97400000: return 8400000 return 320100
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def peel_ptr_decl(decl_type_node): """ Remove PtrDecl and ArrayDecl layer """ is_ptr_decl = False peeled_decl_type_node = decl_type_node while peeled_decl_type_node.__class__.__name__ == 'PtrDecl' or peeled_decl_type_node.__class__.__name__ == 'ArrayDecl': is_ptr_decl = True peeled_decl_type_node = peel...
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import pandas import numpy def pandas_df_without_nan(df: pandas.DataFrame, value:object=None) -> pandas.DataFrame: """ Takes a pandas DataFrame, replaces the numpy.nan values with None. Or with value specified with optional `value` kwarg. """ return df.replace({numpy.nan: value})
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import math def latitud_en_radianes(latitud): """ calcula la latitud en radianes param: latitud: latitud de la estación """ return (math.pi * latitud)/180
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def _get_query_string(args): """Return the query values given the arguments to a pymemcache command. If there are multiple query values, they are joined together space-separated. """ keys = '' # shortcut if no args if not args: return keys # pull out the first arg which will c...
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import string import random def nicepass(alpha=6,numeric=2): """ returns a human-readble password (say rol86din instead of a difficult to remember K8Yn9muL ) """ vowels = ['a','e','i','o','u'] consonants = [a for a in string.ascii_lowercase if a not in vowels] digits = string.digits #...
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def pybb_posted_by(post, user): """ Check if the post is writed by the user. """ return post.user == user
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import torch def shearx_grid(output_size, ulim=(-1, 1), vlim=(-5, 5), out=None, device=None): """Horizontal shear coordinate system. Args: output_size: (int, int), number of sampled values for the v-coordinate and u-coordinate respectively ulim: (float, float), Cartesian y-coordinate limi...
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def block_schema_to_dict(schema): """Serializes block schema to dict. Args: schema: block schema to serialize into dict. Returns: dict: dict from BlockSchema. """ return dict( schema_id=str(schema.id), name=schema.name )
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def classname(cls): """Create the class name str for __repr__""" return '.'.join([cls.__class__.__module__, cls.__class__.__name__])
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import os def check_meta_ettus_path(mep): """ Check if mep is a valid path of a meta-ettus repository. """ return os.path.isdir(os.path.join(mep, 'meta-ettus-core'))
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import pickle def get_ibc_data(use_neutral=False, use_subsampling=False, return_subsampling_depths=False, labels=(0, 1, 2)): """ Samples the annotated IBC data. This dataset can be described more here. http://www.cs.umd.edu/~miyyer/ibc/. This dataset...
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import os import re def get_all_sizes(folder, suffix='*'): """ will sort and list all the files by their sizes. If some files have the same size, will list them together Args: ---- folder: gs folder path suffix: of a specific file type Returns: ------- dict(sizes:[paths...
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def tokens2options(tokens): """Split the list of tokens into the options it specifies, even if there is a single option. Arguments: `tokens` -- the list of tokens to split, as provided by the tokenizer. Returns: A list of options, suitable for parsing. """ options = [] option = [] ...
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import torch def bce_loss(y, y_hat): """ Args: y_hat: the prediction tensor y: the label tensor Return: loss: scalar of loss dJdy_hat: The gradient tensor of shape (batch_size, linear_2_out_features) """ loss = -(1.0/y.shape[1])*torch.sum(y * torch.log(y_ha...
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def dummy_annotation_txt_header(tmpdir_factory): """Create txt header.""" content = ("# A something \n" "# orig_time : 42\n" "# orig_time : 2002-12-03 19:01:11.720100\n" "# orig_time : 42\n" "# C\n" "Done") fname = tmpdir_factory.mkt...
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def traverse_keys(d, keys, default=None): """ Allows you to look up a 'path' of keys in nested dicts without knowing whether each key exists """ key = keys.pop(0) item = d.get(key, default) if len(keys) == 0: return item if not item: return default return traverse_keys(it...
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def threshold_RMSE(upper_bound, lower_bound, q=3): """Compute threshold for RMSE metric. Args: upper_bound (int): Upper bound of regression outputs lower_bound (int): lower bound of regression outputs q (int): Quantification parameter Returns: threshold (float): The minimal...
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def TxtWrapBy(start_str, end, all): """ 获取选取设备信息的索引,通过[]之间的字符去解析 :param start_str: 开始字符 :param: end: 结束字符 :param: all: 总字符串 :return: 返回相应解析的字符串 """ start = all.find(start_str) if start >= 0: start += len(start_str) end = all.find(end, start) if end >= 0: ...
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def enum(*sequential): """ pseudo Enum type; Usage: EnumType=enum('key1','key2',...,) """ enums = dict(zip(sequential, range(len(sequential)))) return type('Enum', (), enums)
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from typing import List def find_first_k_missing_positive(nums: List[int], k: int) -> List[int]: """ Time Complexity: O(N) Space Complexity: O(1) Parameters ---------- nums : List[int] Input unsorted array. k : int Input number 'k'. Returns ------- List[int] ...
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def capitalize_correct(phrase): """ Capitalizes words in a string, avoiding possessives being capitalized """ phrase = phrase.strip() return " ".join(w.capitalize() for w in phrase.split())
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def delete(path): """decorator which registers a class method as a DELETE handler""" def decorator(f): f._endpoint = path f._methods = ['DELETE'] return f return decorator
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def parseSecondsIntoReadableTime(seconds): """Generate a string based on seconds having the format "m:s:cs".""" minutes = seconds / 60 absoluteMinutes = int(minutes) seconds = (minutes - absoluteMinutes) * 60 absoluteSeconds = int(seconds) m = str(absoluteMinutes) if absoluteMinutes <= 9: ...
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def function_1_arg(first_argument): """one argument function""" return first_argument
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import torch def generate_grid(zmin, zmax, dz, device, ndim=2): """generate a 1- or 2-dimensional grid Returns: Tensor, int Tensor: The grid tensor with shape (k^2, 2), where k=(zmax - zmin)/dz int: k """ if ndim == 2: x = torch.arange(zmin, zmax, dz) k = x...
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def remove_unknowns(vocab, sentence): """ assuming sentence is a list """ for i in range(len(sentence)): if not sentence[i] in vocab: sentence[i] = "<unk>" return sentence
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def trapezoid_area(base_short,base_long,height): """Usage: Find the area of a trapezoid""" return ((base_short+base_long)/2)*height
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from typing import Dict from typing import Any from warnings import warn def has_license_and_update(data: Dict[str, Any]) -> bool: """Check if license header exists anywhere in notebook and format. Args: data: object representing a parsed JSON notebook. Returns: Boolean: True if notebook contains the ...
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import os def getLoad(): """Get the system load in 1m,5m and 10m. This is available under Linux or Darwin only.""" load = {} system_load = os.getloadavg() # check if system_load is None before adding it if system_load is not None: # In this tupple get the middle one load.update({"1...
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def lookup_salt(email_address, db): """ lookup and return a user's password salt """ salt_dict = db.users.find_one( {'email_address_lowercase': email_address.strip().lower(), 'salt': {'$exists': 1}}, {'salt': 1}) if salt_dict is not None: return salt_dict['salt'] ...
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from pkg_resources import get_distribution, DistributionNotFound def distribution_version(name): """try to get the version of the named distribution, returs None on failure""" try: dist = get_distribution(name) except DistributionNotFound: pass else: return dist.version
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def to_css_length(x): """ Return the standard length string of css. It's compatible with number values in old versions. :param x: :return: """ if isinstance(x, (int, float)): return '{}px'.format(x) else: return x
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def nD0_active(N, vzero, dr, L): """ Returns product of particle density n = N/L^2 and active diffusion constant D_0 = vzero^2/2*dr. Parameters ---------- N : int or float Number of particles. vzero : float Self-propelling velocity. dr : float Rotation diffusion ...
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def ishappy(n): """ Takes an input of a number to check if it is happy Returns bool values True for a happy number and False for unhappy numbers """ cache=[1, 7, 10, 13, 19, 23, 28, 31, 32, 44, 49, 68, 70, 79, 82, 86, 91, 94, 97, 100, 103, 109, 129, 130, 133, 139, 167, 176, 188, 190, 192, 1...
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def unsetbit(target, bit): """ Сбрасывает бит bit в 0 в байте target """ return target & ~ (1 << bit)
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