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import hashlib def _get_file_sha256_hash(file_path): """ Takes a file and returns the SHA 256 hash of its data Args: file_path (str): path of file to hash Returns: (str) """ sha256hash = hashlib.sha256() chunk_size = 8192 with open(file_path, "rb") as f: while True: ...
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def CheckProg(context, prog_name): """ Configure check for a specific program. Check whether program prog_name exists in path. If it is found, returns the path for it, otherwise returns None. """ context.Display("Checking whether %s program exists..." % prog_name) path = context.env.WhereI...
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def hwc_to_chw(x): """image format HWC to CHW""" if len(x.shape) == 3: return x.permute(2, 0, 1) else: return x.permute(0, 3, 1, 2)
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def helloWorld(): """ Root route Returns: String -- Return a valid string """ return "Hello, cross-origin-world!"
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def get_dictionary(filename): """returns a dictionary with the word being the key to it's phonetic pronunciation""" rhymedict={} with open(filename) as wordfile: lines=wordfile.read().splitlines() for line in lines: line=line.split(" ") rhymedict[line[0]]=lin...
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def _filtering_extensive(iss, neighs, neighs_oi, dists_oi): """Filtering previously visited nodes.""" indices = [i for i in range(len(neighs_oi)) if neighs_oi[i] not in neighs[iss]] neighs_oi = [neighs_oi[i] for i in indices] dists_oi = [dists_oi[i] for i in indices] return neighs_oi,...
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def rescale_prediction(prediction, scalers): """ :param prediction: the closing price prediction, which has been scaled :param scalers: dict of standardscalers used to scale known data """ return scalers['close'].inverse_transform(prediction.reshape(-1, 1))[0][0]
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import requests from bs4 import BeautifulSoup def get_synset_image_urls(synset_id): """ Takes a synset id and fetches urls of associated images The function uses the synset ID to open a website from ImageNet corresponding to the synset ID that displays nothing but a long list of links of images a...
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def chrome_options(chrome_options, create_tmp_dir): """Set configuration to run Chrome with specific options.""" prefs = {"download.default_directory": create_tmp_dir, "download.prompt_for_download": False} chrome_options.add_experimental_option("prefs", prefs) return chrome_options
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from typing import Dict def solve_part2(identified: Dict[str, str]) -> str: """ identified: 'eggs': 'hn', 'fish': 'dgsdtj', 'nuts': 'kpksf', 'peanuts': 'sjcvsr', 'sesame': 'bstzgn', 'shellfish': 'kmmqmv', 'soy': 'vkdxfj', 'wheat': 'bsfqgb' Solution: hn,dgsdtj,kpksf,s...
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def use_loop(f, list_input): """Single processing""" list_result = [] for input in list_input: list_result.append(f(input)) return list_result
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import sys import statistics def weight_article(weight_paragraph_result, weighting_metric): """ weight metric between paragraphs :param weight_paragraph_result: list of dicts :param weighting_metric: String :return: weighted weight_paragraph_result (final) """ article_dict = dict() we...
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def _list_info(candidate_element): """Log element id, title or placeholder """ outer_html = candidate_element.get_attribute('outerHTML') if outer_html != '' or outer_html is not None: return "OuterHTML: {}".format(outer_html) return candidate_element
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def index(): """Unprotected API """ return "Hello, World!"
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def cdot(C, nb, F, c0, g): """ Inputs: C : nutrient concentration at time t nb : total bacteria population size at time t F : chemostat flow rate c0 : initial nutrient concentration g : bacterial growth rate """ return F*(c0-C) - g*C*nb
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import os import re def save_comments(outputdir, ta_name): """ Save index and content of comments in conf file and return dictionary thereof """ config_file = os.path.join(outputdir, ta_name,'default', "app.conf") comment_map = {} with open(config_file, 'r') as file: i = 0 line...
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from subprocess import PIPE import subprocess import shlex def run_command_and_get_result(command): """ Runs a command in the console and gets the result. Command can be a string (single command) or a tuple of strings (multiple commands). In the multi-command setting, commands will be joined ...
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def linear(x): """Linear activation function :math:`\\varphi(x) = x` Parameters ---------- x : float32 The activation (the summed, weighted input of a neuron). Returns ------- float32 The output of the identity applied to the activation. """ return x
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def parse_cdk_file(file): """ Function to parse CDK output Parameters ---------- file : str file to parse the chemical descriptors from Returns ------- dict dictionary containing the chemical descriptor name and the chemical descriptor value """ cdk_file...
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def get_distance(highway_now: list, car_index: int) -> int: """ membuat jarak antara kendaraan dan kendaraan selanjutnya >>> get_distance([6, -1, 6, -1, 6], 2) 1 """ distance = 0 cells = highway_now[car_index + 1 :] for cell in range(len(cells)): if cells[cell] != -1: ...
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def templates(): """Dictionary of dockerfile templates and settings.""" return { 'ros2': [ { 'name': 'foxy', 'ubuntu_distro': '20.04', 'ros_distro': 'foxy', 'python_version': '3.8' }, { 'n...
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def _normalise(s): """ Normalise the supplied string in the following ways: 1. String excess whitespace 2. cast to lower case 3. Normalise all internal spacing :param s: string to be normalised :return: normalised string """ if s is None: return "" s = s.strip().lower()...
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import socket def create_socket_connection(hostname, port=443, sock_type=socket.SOCK_STREAM, timeout=10): """See: https://github.com/python/cpython/blob/40ee9a3640d702bce127e9877c82a99ce817f0d1/Lib/socket.py#L691""" err = None try: for res in socket.getaddrinfo(hostname, port, 0, sock_type): ...
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import six def inclusion_only_unlimited_args_from_template(*args): """Expected inclusion_only_unlimited_args_from_template __doc__""" return { "result": "inclusion_only_unlimited_args_from_template - Expected result: %s" % ( ', '.join(six.text_type(arg) for arg in args) ) }
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def round_mean(avg_bias, sentences, k=4): """Compute the average and round to k places""" avg_bias = round(float(avg_bias) / float(len(sentences)), k) return avg_bias
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def package_fixture(): """ DC/OS package fixture. :rtype: dict """ return { "apps": [ "/helloworld" ], "command": { "name": "helloworld" }, "description": "Example DCOS application package", "maintainer": "support@mesosphere.io", ...
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import warnings def no_of_events(tweet_file, t_observation, t_prediction, time_factor=1): """ calculate the number of retweets at the observation time (=t_observation) and at the final time of prediction (=t_prediction) :param tweet_file: data file :param t_observation: observation time :param t_p...
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def each_unit_sum(number): """ :param number : :return: """ sum_value = 0 for item in str(number): sum_value += int(item) return sum_value
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def combine_rs_and_ps(regular_season, post_season): """Combine Regular Season and Post-Season Data into one table. Args: regular_season: player RS data for table type post_season: player PS data for table type Returns: combined RS and PS table """ total = [] if regular_...
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def option_str_list(argument): """ An option validator for parsing a comma-separated option argument. Similar to the validators found in `docutils.parsers.rst.directives`. """ if argument is None: raise ValueError("argument required but none supplied") else: return [s.strip() fo...
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def discard_empty(s: str) -> bool: """Return true if the provided string is non-empty.""" if s: return True return False
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def calcDistance(ent1, ent2): """ Calculate the distance between two entities """ dimensionDelta = (ent1.dimension-ent2.dimension) * 1000 deltaPos = [ent1.pos[a]-ent2.pos[a] for a in (0, 1)] return (deltaPos[0]**2 + deltaPos[1]**2)**0.5 + dimensionDelta
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import torch def create_batch_from_data_list(data_list): """Given a list of datapoints, create a batch. Args: data_list (list): List of items returned by SceneRenderDataset. """ imgs = [] azimuths = [] elevations = [] for data_item in data_list: img, render_params = data_i...
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import io def _encode_image(image_array, fmt): """encodes an (numpy) image array to string. Args: image_array: (numpy) image array fmt: image format to use Returns: encoded image string """ from PIL import Image # pylint: disable=g-import-not-at-top pil_image = Image.fromarray(image_array) ...
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from typing import AnyStr def detect_space_after(txt: AnyStr, end: int): """Given text and an end index returns True if there is a space after the end index, false otherwise. Parameters ---------- txt : str the text itself. end : int the end index of the token. Returns ...
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def dict2string(dictionary, typ='dictionary'): """ DEFINITION: converts strings (as taken from a database) to a dictionary or a list of dictionaries VARIABLES: dictionary : dictionary typ : dictionary, listofdict, array """ ...
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import os def check_if_file_exists(file): """Check if a given file exists either as a file, dir or symlink""" if any([ os.path.isfile(file), os.path.isdir(file), os.path.islink(file) ]): return True
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def split_file_name(file_absolute_name): """ Splits a file name into: [directory, name, extension] :param full_name_template: :return: """ split_template = file_absolute_name.split('/') [name, extension] = split_template[-1].split('.') directory = "/".join(split_template[0: len(split_te...
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import requests def check_http_307_redirection(): """Чтобы корректно работать на новом домене HTTP-клиент должен поддерживать редирект HTTP 307. Подробнее: https://ads.tiktok.com/marketing_api/docs?rid=esb88xalm6m&id=1709207085043713""" response = requests.post( url='https://httpbingo.org/redirect...
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def fig_file(m): """Returns the first group of the match""" return [ 'fig', m.group(1) ]
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import subprocess def run_blastp(query_file, database_file, e_value_cutoff, processes): """ Runs BLASTp... :param query_file: The amino acid query FASTA file. :param database_file: The amino acid BLAST database location (amino acid FASTA file at this location) :param e_value_cutoff: The e-value cutoff for BLASTp...
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import socket from contextlib import closing def check_socket(port): """Check whether the given port is open to bind""" with closing(socket.socket(socket.AF_INET, socket.SOCK_STREAM)) as sock: try: sock.bind(('', port)) except: #Port is not open res = False...
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import json import hashlib def get_hash(block): """ Creates a SHA-256 hash of a Block :param block: Block """ # We must make sure that the Dictionary is Ordered, or we'll have inconsistent hashes block_string = json.dumps(block, sort_keys=True).encode() return hashlib.sha256(block_string)...
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import os def get_env(name): """Returns environment variable""" return os.environ[name]
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def transaction_type_6(): """Transaction of type "timelock transfer" """ data = { 'data': {}, 'serialised': '' } return data
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import argparse def set_cmd_line_args(): """ get the command-line arguments needed to convert the Excel input file into Define-XML :return: return the argparse object with the command-line parameters """ parser = argparse.ArgumentParser() parser.add_argument("-d", "--define", help="path and fi...
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def ranges_intersect(pair1, pair2, buffer=0): """ true if ranges entersect by more than buffer """ return (pair1[0] < pair2[1] - buffer) and (pair1[1] > pair2[0] + buffer)
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def KNMConfig(config): """ Creates config required for KNM from the clarity-ext config (which has more than that) """ return { key: config[key] for key in [ "test_partner_base_url", "test_partner_code_system_base_url", "test_partner_user", ...
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import warnings def dummy_func(arg1, keyval1=None): """ Dummy function to test """ if arg1 == "User": msg = "Raising User error" warnings.warn(msg) return arg1, keyval1
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def return_ttl(name: str) -> int: """ **return_ttl** returns ttl for cache depending on long, short, and medium :param name: string -> period = short, medium, long :return: int -> time to live """ cache_ttl_short: int = 1800 # (60*60 * 0.5) 30 minutes cache_ttl_medium: int ...
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from pathlib import Path from typing import List import os def get_gdal_incdirs(gdal_dir: Path) -> List[str]: """ This function finds the include directories """ gdal_incdir = os.environ.get("GDAL_INCDIR") incdirs = [] if gdal_incdir is None: if (gdal_dir / "include").exists(): ...
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import subprocess def do_rsync(srcs, dest, suffix, log, owner, no_sudo): """ run rsync to copy all dirs in SRCS under DEST, making a back up of overwritten files with SUFFIX; a line saying suffix=SUFFIX and all outputs from rsync are put into a file named LOG. It will be read by read_copied_files...
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import json def get_filtered_keys_from_map(key_map, payload): """ Filter the payload for the given keylist and return the filtered dict :param key_list: a json old_key:new_key map in string format :param payload: dict payload which needs to be filtered :return: dict with new_key, value pair based ...
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def isATriangle(neigh_orders, face): """ neigh_orders_163842: int, (N*7) x 1 face: int, 3 x 1 """ neighs = neigh_orders[face[0]*7:face[0]*7+6] if face[1] not in neighs or face[2] not in neighs: return False neighs = neigh_orders[face[1]*7:face[1]*7+6] if face[2] not in neighs: ...
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def chunk_string(input_str, length): """ Splits a string in to smaller chunks. NOTE: http://stackoverflow.com/questions/18854620/ :param input_str: str the input string to chunk. :param length: int the length of each chunk. :return: list of input str chunks. """ return list((input_str[...
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import os def is_final_group(group_dir) -> bool: """Checks if group does not contain any directories other than in or out""" dirs = [path for path in os.listdir(group_dir) if os.path.isdir(path)] if len(dirs) == 0 or 'in' in dirs: return True return False
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def transform_table(table): """ Unsqueeze keys aligning with values Args: table: table defining key-value pairs Returns: - unsqueezed key-value dict """ keys, values = [], [] for sample in table: ks, vs = [], [] for k, vals in sample.items(): ks....
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def line_from_2_points(x1, y1, x2, y2): """ Gets the coefficients of a line, given 2 points :param x1: :param y1: :param x2: :param y2: :return: """ a = y1 - y2 b = x2 - x1 c = x1 * y2 - x2 * y1 return a, b, c
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def is_pandigital(n): """Tests if n is a 1-9 pandigital""" if len(str(n)) != 9: return False if "0" in str(n): return False return len(str(n)) == len(set(str(n)))
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def numeric_strings(s): """ :param s: num string :return: is num """ def is_num(s, allow_dot = True, allow_E = True): """ :param s: num string :param allow_dot: if allow . :param allow_E: if allow E/e :return: Bool """ number = ['0', '1', '2',...
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def mulrowcol(row, col, K): """ Multiplies two lists representing row and column element-wise. Gotcha: Here the column is represented as a list contrary to the norm where it is represented as a list of one element lists. The reason is that the theoretically correct approach is too expensive. This p...
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import base64 def load_wrap(filename, attach=False): """ Encodes a load or attach command as valid Python code. INPUT: - ``filename`` - a string; the argument to the load or attach command - ``attach`` - a boolean (default: False); whether to attach ``filename``, instead of loading ...
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def bool_to_bin(bool_value): """ Helper function to map a boolean value to a binary value. :param bool_value: boolean boolean value [bool] :return: binary value [int] """ if bool_value: return 1 else: return 0
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def _has_tag(Estimator, tag): """Check whether an Estimator has the given tag or not. Parameters ---------- Estimator : Estimator class tag : str An Estimator tag like "skip-inverse-transform" Returns ------- bool """ # Check if tag is in all tags return Estimator._...
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def target(): """Input target name.""" return 'ENCELADUS'
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import logging def get_lower_level(l0, l1): """Compare logging levels and return the lower level.""" if isinstance(l0, (str)): l0 = logging.getLevelName(l0) if isinstance(l1, (str)): l1 = logging.getLevelName(l1) return l0 if l0 < l1 else l1
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def _conv2d3d_strides_or_dilations(name, value, data_format, default_value=1): """Compute strides or dilation values for 2D and 3D convolutions.""" if value is None: value = default_value if not isinstance(value, (int, list)): raise ValueError("{} must be an int or list".format(name)) #...
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def check_prefixes(parsed, expected_prefixes): """Make sure each rank has the expected prefix""" for name, prefix in zip(parsed, expected_prefixes): try: obs, level_name = name.split('__', 1) except ValueError: return False if obs != prefix: return Fa...
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import string import re def clean_text_round3(text): """ Clean up text data. Do what clean_text_round1 does, adding: Remove pontuations, except accents. Remove words if less than 3 letters Remove some special chars commom in papers """ remove = string.punctuation remove = remove.r...
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def _compare_glue_connection_params(user_params, current_params): """ Compare Glue connection params. If there is a difference, return True immediately else return False :param user_params: the Glue connection parameters passed by the user :param current_params: the Glue connection parameters currently...
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import time def time_it(func): """记时装饰器函数""" def inner(): start = time.time() func() end = time.time() print("程序用时:{}".format(end - start)) return inner
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def model_snowdepthtrans(Sdepth = 0.0, Pns = 100.0): """ - Name: SnowDepthTrans -Version: 1.0, -Time step: 1 - Description: * Title: snow cover depth conversion * Author: STICS * Reference: doi:http://dx.doi.org/10.1016/j.agrformet.2014.05.002 ...
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def match_path(path, partial_paths): """Does the given path contain any of the stubs in partial_paths?""" return any(partial_path in str(path) for partial_path in partial_paths)
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def minmax_normalize(X): """Normalizes X into the -0.5, 0.5 range.""" # X -= X.min() # X /= X.max() # X -= 0.5 X = (X-X.min()) / (X.max() - X.min()) return X
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def validate_tags(tags): """makes sure the tags are well formed""" tags_good = True for tag in tags: if not all (key in tag for key in ('Key', 'Value')): print("the following tag is malformed: {}".format(tag)) tags_good = False return tags_good
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def det_new_group(i, base=0): """Determine if new_group should be added to pipetting operation. Helper to determine if new_group should be added. Returns true when i matches the base, which defaults to 0. Parameters ---------- i : int The iteration you are on base : int, optional ...
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def get_T(Theta): """(6) Args: Theta: 空気温度(℃) Returns: 絶対温度(K) """ return Theta + 273.16
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def restructure_ctd_response(json_doc): """restructure the JSON output from CTD API parameters * json_doc: the API response from CTD API """ # convert from list to dict if isinstance(json_doc, list): json_doc = {'data': json_doc} for _doc in json_doc['data']: if "PubMedI...
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def cumulative_gain(rank_list): """Calculate the cumulative gain based on the rank list and return a list.""" cumulative_set = [] cumulative_set.append(rank_list[0]) for i in range(1, len(rank_list)): cg = cumulative_set[i-1] + rank_list[i] cumulative_set.append(cg) return cumulative...
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import argparse def parse_args(home): """Parse CLI arguments.""" parser = argparse.ArgumentParser(description="Manage GitLab via API.") parser.add_argument("action", help="Define action to take.", choices=[ "get_all_groups", "get_group_details", "get_group_projects", "get_issues", "get_use...
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import click def atomic_to_global_desc_options(f): """Create common options for global descriptors constructed based on atomic fingerprints """ f = click.option('--reducer_type', '-r', help='type of operations to get global descriptors from the atomic soap vectors, e.g. \ ...
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def RK4(x, h, f): """Runge-Kutta 4th-order integration method for an autonomous system f.""" K1 = h*f(x) K2 = h*f(x+(K1 * 0.5)) K3 = h*f(x+(K2 * 0.5)) K4 = h*f(x+K3) return x+(1/6.0)*(K1 + 2*K2 + 2*K3 + K4)
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import torch def pad_collate_fn(data_list): """ Here we pad with last image/ timestamp to get a contiguous batch """ images, _ = zip(*data_list) max_len = max([item.shape[0] for item in images]) b = len(images) _, c, h, w = images[0].shape shape = (max_len, b, c, h, w) out_images =...
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def get_aa_at_gene_pos(row, ref_aa_seq_dict): """ Helper function to apply on every row of a data frame to find the reference amino acid at given a gene and amino acid position. Parameters: ============== - row: dict Row of dataframe in dict form. Should have fields aa_pos (1-based aa po...
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def lower_text(text: str) -> str: """ Given ``text`` str, transform it into lowercase Parameters ---------- text : string Returns ------- string """ return text.lower()
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from datetime import datetime def get_current_datetime() -> datetime: """ Generate datetime in UTC timezone. Returns: datetime: datetime. """ return datetime.utcnow()
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def _for(x): """ _for """ ret = x * x for i in (2, 3): ret = ret * i return ret
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def _extract_match_id(match_json): """ Extract the match_id from json response. { "matches": [ { "id": "0000...", "match_id": 1313, "similarity": "001000" } ] } """ matches = match_json.get('matches', []) ...
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def ascii_encodable(text): """ Return True if the given TEXT can be losslessly encoded in ASCII. Otherwise, return False. """ return all(ord(char) < 128 for char in text)
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import logging import os def process_logfile(job_obj, ci_log): """ Runs after code has been cloned and built Checks to see whether build was successful or failed """ logger = logging.getLogger('BUILD/PROCESS_LOGFILE') fail_string = 'FAIL' success_string = 'ALL BUILDS SUCCEEDED' build_s...
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from functools import reduce def url_path_join(parts: list) -> str: """拼接 url path""" return reduce(lambda a, b: a.rstrip("/") + "/" + b.lstrip("/"), parts) if parts else ""
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def join_wisely(left, right, remove_duplicates=True, echo=False, **kwargs): """ joins two dataframes and returns a dictionary with 3 members: left_only, right_only, and both (the results of the two joins) :type left: DataFrame :type right: DataFrame :type kwargs: dict :rtype: dict of DataFrames """ left=left.co...
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import base64 def decode_part(raw, encoding="utf-8"): """Decode a part of the JWT. JWT is encoded by padding-less base64url, based on `JWS specs <https://tools.ietf.org/html/rfc7515#appendix-C>`_. :param encoding: If you are going to decode the first 2 parts of a JWT, i.e. the header ...
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import time def allow_retries(retry_on=[], wait=time.sleep, retries=3, delay=2): """ A general purpose decorator that allows a given function to be retried after certain failures. **Example** Suppose we have a function that occasionally throws errors if it doesn't get its way. In that case we ca...
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import socket def ping_command(ping_binary, address, version=socket.AF_INET, count=1, payload_size=None): """Generate a ping shell command for Popen""" args = [ping_binary] if version == socket.AF_INET6: args.append('-6') else: args.append('-4') # ping interval args.append('-i...
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import os import fnmatch def find_files(directory, pattern='*.csv'): """ Recursively finds all files matching the pattern. :param directory: directory path :param pattern: reggex :return: list of files """ files = [] for root, dirnames, filenames in os.walk(directory): for filen...
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def df2geojson(df, lat='latitude', long='longitude', remove_coords_properties=True): """ Convert um dataframe, com colunas de latitude e longitude, em um objeto geojson de pontos https://notebook.community/gnestor/jupyter-renderers/notebooks/nteract/pandas-to-geojson # Usage feature_collection = da...
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def a2s(a): """ helper funciton: Convert to string """ str='' return str.join(['%g '%(v) for v in a.ravel()])
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def swap_last_element(lst_to_swap: list) -> list: """Intercambiate first element with the last in the list""" new_lst = lst_to_swap.copy() new_lst[0], new_lst[-1] = lst_to_swap[-1], lst_to_swap[0] return new_lst
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def google_map(context): """ Dependencies for google_map gizmo. """ return ('tethys_gizmos/js/tethys_map.js',)
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