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def pos_mask(row: int, col: int) -> int: """Return the bit mask for (row, col) on a bitboard.""" assert 0 <= row < 8 assert 0 <= col < 8 return 0x8000000000000000 >> col >> row * 8
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def find_vswitch_uri_for_id(k2_id, vswitch_map): """ Returns the vSwitch href URI for a given K2 id. :param k2_id: The K2 vSwitch ID :param vswitch_map: The vSwitch map from the HMC Topo :returns: vSwitch URI """ k2_obj = vswitch_map.get(k2_id) if not k2_obj: return None retu...
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def find(to_find, k): """Finds the Kth to last element in LinkedList. uses two references to find the kth to last element within a linked list Args: to_find: LinkedList containing kth element k: the kth to last position Returns: the kth node's data. """ target = t...
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def get_leftmost_end_point(linestring): """ extracts leftmost end point of linestring :param linestring: shapely.geometry.LineString :return: shapely.geometry.Point """ point_0_x = linestring.xy[0][0] point_1_x = linestring.xy[0][-1] if point_0_x <= point_1_x: return point_0_x ...
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def getKey(myDict, value): """ Finds key associated with a value in dictionary """ for key, val in myDict.items(): if val == value: return key return -1
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def _worker_fn(url, dataset_fn, sampler_fn): """Function to generate the dataset and sampler for each worker.""" dataset = dataset_fn(url) sampler = sampler_fn(dataset) return (dataset, sampler)
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def bin_to_str(x, digits=16): """ >>> bin_to_str(10, 6) '001010' """ format = "{x:0%db}" % digits return format.format(x=x)
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def summary_global_quantities(ods, update=True): """ Calculates global quantities for each time slice and stores them in the summary ods: - Greenwald Fraction - Energy confinement time estimated from the IPB98(y,2) scaling - Integrate power densities to the totals - Generate summary.global_q...
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def get_resume_name(stage_name): """return a new name with resume and an increasing index""" split_stage_name = stage_name.split("_") if len(split_stage_name) > 2 and split_stage_name[-2] == "resume": resume_index = int(split_stage_name[-1]) + 1 return "_".join(split_stage_name[:-2] + ["resu...
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import os def is_sm(): """Check if running in a Sagemaker Training instance """ sm_framework_params = os.environ.get('SM_FRAMEWORK_PARAMS', None) if sm_framework_params: return True return False
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def create_empty_hierarchy(): """Create an empty hierarchy structure (dict). hierarchy = { "lvl0": None, "lvl1": None, "lvl2": None, "lvl3": None, "lvl4": None, "lvl5": None, "lvl6": No...
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def acknowledgements(): """Returns acknowledgements for the specified ACE instrument Returns ------- ackn : string Acknowledgements for the ACE instrument """ ackn = ''.join(['NOAA provided funds for the modification of ', ' the ACE transmitter to enable the broadc...
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def _merge_columns(grid, columns_to_merge): """A helper function that merges columns in a grid. grid: [[str]] columns_to_merge: [(col1, col2)] The columns must not overlap. Also, they must be increasing. So if we had something like: [(x,y), (w,z)], x<y<w<z must hold. IMPORT...
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import yaml def extract(mdtext): """ Extract a yaml text blob from markdown text and parse the blob. Returns a tuple (yaml_obj, markdown_text) """ lines = mdtext.split("\n") n = 0 ylines = [] mlines = [] for line in lines: if (line == "---"): n = n + 1 else: if n == 1: y...
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import os def _write_file(contents, path, owner_uid, group_gid, mode): """Try to write file to filesystem with specific UID, GID, and file mode""" try: with open(path, 'w') as f: f.write(contents) os.chmod(path, mode) os.chown(path, owner_uid, group_gid) return Tr...
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import torch def binary_accuracy(prediction, target): """Calculates accuracy between two classes using probabilities Parameters ---------- prediction : torch.Tensor or torch.autograd.Variable Vector of probabilities of class 1 target : torch.Tensor Vector containing the class indices 0 or 1 """ ...
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import inspect def listens_to(name): # noqa: D401 """Decorator to register a method of a :class:`Handler` as a listener. The method must be a coroutine. Arguments --------- name: :class:`str` The name of the event to listen to. Raises ------ TypeError The name was n...
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def any_lowercase5(s): """ incorrect - returns whether false if s contains any capital letters""" for c in s: if not c.islower(): return False return True
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def remove_invalid_chars(string) -> str: """ Примимает строку и возвращает строку, удаляя из нее символы, указанные в invalid_chars """ invalid_chars = '\/:*?"<>|\r\n' return string.rstrip().translate(dict.fromkeys(map(ord, invalid_chars)))
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def correlate_dicts(dicts, key): """Correlate several dicts under one superdict. If you have several dicts each with a 'name' key, this puts them in a container dict keyed by name. Example:: >>> d1 = {"name": "Fred", "age": 41} >>> d2 = {"name": "Barney", "age": 31} >>> flint...
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def parse_blosum_table(table, coeff_type=int, key_type='row'): """ Parse a table of pairwise amino acid coefficient (e.g. BLOSUM50) """ lines = table.split("\n") # drop comments lines = [line for line in lines if not line.startswith("#")] # drop CR endline characters lines = [line.repla...
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import ipaddress def anonymize_IP(ip): """ Anonymize IP before storing in the database. Mask for IPv4: 16 Mask for IPv6: 32 """ anonymized_ip = "" try: ip = ipaddress.ip_address("{}".format(ip.strip())) if ip.version == 4: mask = "/16" else: ...
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import functools def as_list(f): """Decorator that changes a generator into a function that returns a list.""" @functools.wraps(f) def wrapper(*args, **kwargs): return list(f(*args, **kwargs)) return wrapper
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def is_overlapped(end1, start2): """Returns True if the two segments overlap Arguments --------- end1 : float End time of the first segment. start2 : float Start time of the second segment. """ if start2 > end1: return False else: return True
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import requests import json import sys def send(payload, webhook_url): """Sends notification to Slack""" # Send message as a JSON string try: response = requests.post( webhook_url, data=json.dumps(payload), headers={'Content-Type': 'application/json'}) excep...
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def _flatten_state(state): """Reduce nested object to string.""" if isinstance(state, list): return ",".join(map(_flatten_state, state)) elif isinstance(state, dict): return ",".join(map(lambda x: ":".join(map(_flatten_state, x)), state.items())) return str(state)
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def _delta(x,y): """ Returns 1 if x and y differ, 0 otherwise. """ return x != y
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def matrix_relative_rotation(r0, r1): """ Find the relative rotation to go from r0 to r1. """ return r1 @ r0.T
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import tempfile def makeTempDir() -> str: """Make a temporary directory. :rtype: str :return: The path to the temporary directory. """ return tempfile.mkdtemp()
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def role(value, arg): """Returns html div with the given user's group's role Keyword arguments value -- list of dictionaries, containing users, groups and roles arg -- a user """ html = '' for group in value.get(arg): role = value.get(arg).get(group) if role: h...
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import os def pkg_resouces_get_default_cache(): """Determine the default cache location This returns the ``PYTHON_EGG_CACHE`` environment variable, if set. Otherwise, on Windows, it returns a "Python-Eggs" subdirectory of the "Application Data" directory. On all other systems, it's "~/.python-eggs"....
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import argparse def get_args(): """ Argument defnitions """ parser = argparse.ArgumentParser(description="Arguments for data exploration") parser.add_argument("--pg", dest="pg", action="store_true", help="tag the sentences wit...
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def firstPreparation(data): """ First preperation, drop the class and prepare data """ data_full = data.copy() data = data.drop(["price"], axis = 1) labels = data_full["price"] return data_full, data, labels
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def parse_header(line): """Returns dict {'field': (start, length), ...}""" fields = [f.strip() for f in line.split(' ') if f.strip()] return {field: (line.index(field), len(field) + 1) for field in fields}
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import warnings def deprecate_arg(old_arg, new_arg, old_value, new_value): """Helper to raise warnings when a deprecated arg is used. Args: old_arg (str): Name of old/deprecated argument. new_arg (str): Name of new argument. old_value (Any): Value the user passed in for the old argume...
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def service_disconnect(connectionId): # noqa: E501 """Disconnect from the service Disconnects from the Azure IoTHub service. More specifically, closes all connections and cleans up all resources for the active connection # noqa: E501 :param connectionId: Id for the connection :type connectionId: str...
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def readfile(filename): """ Reads and returns file contents """ with open(filename) as docfile: return docfile.read()
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import math def get_learning_rate(lr_schedule, tot_epoch, cur_epoch): """ Compuate learning rate based on the initialized learning schedule, e.g., cosine, 1.5e-4,90,6e-5,150,0 -> ('cosine', [1.5e-4,90,6e-5,150,0]). Args: lr_schedule: the learning schedu...
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def topic_ref_transform(ref_string, topic): """ Converts a topic string with forward-slashes into a JSON reference-friendly format ("/" becomes "~1"), then places the new string into the provided base reference path. :param ref_string: The base reference path :param topic: The DXL topic string to c...
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def fall(vfz): """Compute the fall damage inflicted given final vertical speed on touch. Return the untruncated damage corresponding to touch-ground vertical speed *vfz*. Only positive *vfz* values are meaningful. """ return max(0.0, 25 * (vfz - 580) / 111)
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def ang_sym_chek2(m1, m2): """ Calculate the ration of the doses stored in the 2D array m1 at coordinates row = i,column =j to the doses stored in the 2D array m2 at coordinates row = i,column = -j-1 . """ matrix = [] for row_index in range(len(m2)): for value_index in range(len(m2...
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import re def check_date_format(date_str): """ Check the date to ensure that it's in the proper format """ pattern = re.compile("^\d{4}-+\d{2}-+\d{2}T+\d{2}:+\d{2}:+\d{2}.+\d{1,}Z+$") matched = pattern.match(date_str) return matched
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def compute_standard_walking_time(length_m: float, elevation_gain_m: float, elevation_loss_m: float) -> float: """Estimate the hiking time in seconds Parameters ---------- :param: length_m: Length of the hike in meters :param: elevation_gain_m: Elevation gain of the hike in meters :...
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def sort_dict(data: dict, key_type=None, reverse=False): """ Returns a sorted dictionary by keys :param data: the input dictionary :param key_type: type of key (if keys are not str for example) :param reverse: sort in reverse order :return: sorted dictionary """ res = {} if len(data)...
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def _get_QListWidget(self): """ Get currently selected values in QListWidget via re-mapping filter. Selected values are returned as a list. """ return [self._get_map(s.text()) for s in self.selectedItems()]
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def is_user_info_complete(user): """ Returns True if the user has provided all of the required registration info Args: user (django.contrib.auth.models.User): Returns: bool: True if the user has provided all of the required registration info """ return ( hasattr(user, "...
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def poke_64(library, session, address, data): """Write an 64-bit value from the specified address. Corresponds to viPoke64 function of the VISA library. :param library: the visa library wrapped by ctypes. :param session: Unique logical identifier to a session. :param address: Source address to rea...
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def bounds_to_geojson(bounds): """ Convert a rio BoundingBox to geojson with optional buffer :param bounds: BoundingBox :return: geojson with applied buffer """ return { "type": "Polygon", "coordinates": [ [ [bounds.left, bounds.top], [...
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def pre_compute(expr, data, scope=None, **kwargs): """ Don't push slices into memory, they're about to come in anyway """ return data
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def cors(environ): """Solove the cors problem.""" environ.headers['Access-Control-Allow-Origin'] = '*' environ.headers['Access-Control-Allow-Method'] = '*' environ.headers['Access-Control-Allow-Headers'] = 'x-requested-with,content-type' return environ
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def _get_dataset_length(dset, default=1): """Return the dataset's training data length and in case the dataset is uncountable return a defalt value.""" try: return len(dset.train_data) except RuntimeError: return default
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import sys def get_traceback_from_context(context): """ Get the traceback object from the context. """ exception = context.get('exception') if exception: if hasattr(exception, '__traceback__'): return exception.__traceback__ else: # call_exception_handler() ...
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def attribution() -> str: """Returns data attribution string""" return '\u0026copy; <a href="https://usafacts.org">USAFacts</a>. '
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def _filter_core_state_space(df, options): """Applies filters to the core state space. Sometimes, we want to apply filters to a group of choices. Thus, use the following shortcuts. - ``i`` is replaced with every choice with experience. - ``j`` is replaced with every choice without experience. ...
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import torch def _move_to_device(args, device): """Move args to given device :param args: args to move to device :param device: device to move to """ if isinstance(args, tuple): return tuple([_move_to_device(x, device) for x in args]) if isinstance(args, list): return [_move_t...
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def get_output_file(dataset, output_dir): """ Compute the output metadata file name for the given dataset. """ out_file_name = str(dataset.id) + '-metadata.yaml' return output_dir / out_file_name
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import subprocess def _get_n_cpus(platform_name: str) -> str: """Get the number of logical CPUs. Args: platform_name: Assumed to the return value of `platform.system()`. """ command = [""] if platform_name == "Linux": command = ["nproc"] elif platform_name == "Darwin": ...
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import warnings def _split_sections(lines): """ Split rigaku file into sections Returns a list of sections [(name, body, index)] where name is the section type, body is the list of lines between *RAS_name_START and *RAS_name_END and index is the 1-origin index of *RAS_name_START (or the 0-origin ...
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def append_attr_to_dict(attrib, result): """append xml element attrib to dict :param attrib: attributes :param result: dict :type result dict :type attrib dict :return: dict """ for attr in attrib: result["@%s" % attr] = attrib[attr] return result
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def sort_link(context, link_text, sort_field, visible_name=None): """Usage: {% sort_link "link text" "field_name" %} Usage: {% sort_link "link text" "field_name" "Visible name" %} """ is_sorted = False sort_order = None orig_sort_field = sort_field if context.get('current_sort_field') == ...
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import argparse def parse_args(): """Parse input arguments.""" parser = argparse.ArgumentParser(description='Video cropping to images into separate but exact same dirs') parser.add_argument('--video', dest='video', required=True, help='video root path', default='') parser.add_a...
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import zipfile def list_files_in_zip(filename, endswith=None): """ List files in zip archive :param filename: path of the zip :param endswith: optional, end of filename to be matched :return: list of the filepaths """ with zipfile.ZipFile(filename) as zip_file: filelist = zip_file.name...
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import os def construct_name(id, fn, path): """Constructs a file name out of messages ID and packed file name.""" id = id.split(".") id = id[0]+id[1] result = path + os.path.basename(id+"."+fn) return result
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import os def _get_number_of_cores_solaris(): """ Return the number of cores for OpenSolaris 2008.05 and possibly other editions of Solaris. """ f = os.popen("psrinfo -p") try: return int(f.read().strip()) finally: f.close()
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def get_wet_info(wet_distro, name): """ Get information about wet packages or stacks """ repos = wet_distro['repositories'] for repo in repos: info = repos[repo] if repo == name or name in info.get('packages', []): return (repo, info) return None
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def producer_config(config): """Filter the producer config""" for field in ["group.id", "partition.assignment.strategy", "session.timeout.ms", "default.topic.config"]: if field in config: del config[field] return config
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import argparse def parse_all_args(): """ Parses arguments :return: the parsed arguments object """ # parse arguments parser = argparse.ArgumentParser() parser.add_argument("target", help="The type of anomaly to identify") parser.add_argument("fn", ...
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def label_filter(label_key, label_value): """Return a valid label filter for operations.list().""" return 'labels."{}" = "{}"'.format(label_key, label_value)
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from datetime import datetime def utc_folder(x): """ Convert a UTC timestamp to a folder string """ return datetime.utcfromtimestamp(x).strftime('%Y/%j/%H')
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def is_allowed_coupling(coupling, flow, symmetries): """Return boolean if coupling is allowed. """ if len(coupling) != 3: raise ValueError(f'len(coupling) [{len(coupling)}] != 3') if len(flow) != 3: raise ValueError(f'len(flow) [{len(flow)}] != 3') def fermionic_constraint(irreps, ...
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import os def sanitizedFilenameIncludeGuard(absFileName): """produce a string that matches the filename, but that's appropriate for use in a #include""" # Use relative path to ensure files are identical across build directories relFileName = os.path.relpath(absFileName) return "__CPPML_TRANSFORMED_" +...
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def short_state(state: str) -> str: """Return a short version of query state. >>> short_state("active") 'active' >>> short_state("idle in transaction") 'idle in trans' >>> short_state("idle in transaction (aborted)") 'idle in trans (a)' """ return { "idle in transaction": "i...
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import logging def str2zipcode(value): """convert a str to int""" try: return int(value) except ValueError as err: logging.warn("str2zipcode: <%s | %s>" % (value, err)) return 0
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import codecs import json def read_load(json_path, encoding='utf-8'): """Load the data from the json file. Args: json_path (str): Json file path. encoding (str): Encoding, default is ``utf-8``. Returns: dict: Data in the json file. e.g.: { ...
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import re def _extract_sentence_tags(tagged_sentence): """Given a tagged sentence, extracts a dictionary mapping tags to the words or phrases that they tag. Parameters ---------- tagged_sentence : str The sentence with Medscan annotations and tags Returns ------- tags : dict ...
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def find_median(a: int, b: int, c: int) -> int: """Find median of three elements""" x = a - b y = b - c z = a - c if x * y > 0: return b if x * z > 0: return c return a
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def flatten(list): """Flatten a list of elements into a uniqu list Author: Christophe Simonis (christophe@tinyerp.com) Examples:: >>> flatten(['a']) ['a'] >>> flatten('b') ['b'] >>> flatten( [] ) [] >>> flatten( [[], [[]]] ) [] >>> flatten( [[['a','b'], 'c'], 'd', ['e', ...
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def video_settings(settings): """Mock for django settings""" settings.YOUTUBE_DEVELOPER_KEY = "key" settings.YOUTUBE_FETCH_TRANSCRIPT_SLEEP_SECONDS = 0 return settings
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def get_updater(api, resource_type): """Returns the method to update a given resource type """ updaters = { "source": api.update_source, "dataset": api.update_dataset, "model": api.update_model, "ensemble": api.update_ensemble, "batchprediction": api.update_batch_pre...
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import torch def get_complete_dataset(dataloaders, key="train", region="region1"): """ Load complete dataset to memory. Args: dataloaders (OrderedDict): dictionary of dictionaries where the first level keys are 'train', 'validation', and 'test', and second level keys are r...
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def converter_tuple(obj) -> tuple: """ Convert input to a tuple. ``None`` will be converted to an empty tuple. Parameters ---------- obj: Any Object to convert. Returns ------- obj: Tuple[Any] Tuple. """ if obj is None: return () elif hasattr(obj, "_...
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def tupilate(source, val): """Broadcasts val to be a tuple of same size as source""" if isinstance(val, tuple): assert(len(val) == len(source)) return val else: return (val,)*len(source)
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import pandas def dataframe_to_html( dataframe, extra_classes=(), index=False, header=True, use_default_classes=True, escape_html=False, ): """Return a HTML version of a dataframe with Semantic UI CSS style classes. By default it applies the following Semantic UI classes: 'ui', 'c...
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def convert_eq(list_of_eq): """ Convert equality constraints in the right format to be used by unification library. """ lhs = [] rhs = [] for eq in list_of_eq: lhs.append(eq.lhs) rhs.append(eq.rhs) return tuple(lhs), tuple(rhs)
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def split_filtStr(filtStr): """ ...doctest: >>> split_filtStr('a>b;c<=d; e == f; bc=[0,1]') ['a>b', 'c<=d', 'e == f', 'bc=[0,1]'] >>> split_filtStr('a>b AND c<=d AND e == f') ['a>b', 'c<=d', 'e == f'] >>> split_filtStr('bc=[0,1]') ['bc=[0,1]'] >>> split_f...
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def coord2pix(cx, cy, cdim, imgdim, origin="upper"): """Converts coordinate x/y to image pixel locations. Parameters ---------- cx : float or ndarray Coordinate x. cy : float or ndarray Coordinate y. cdim : list-like Coordinate limits (x_min, x_max, y_min, y_max) of imag...
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def fix_shape_intervals(intervals): """Fix issue for intervals of dims with shape (https://github.com/Epistimio/orion/issues/800) """ for i, interval in enumerate(intervals): intervals[i] = tuple(map(float, interval)) return intervals
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def multiply(a,b): """ multiply two numbers """ return a*b
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def get_public_key(remote, realm_url): """Get the realm's public key with the ID kid from Keycloak.""" certs_resp = remote.get(realm_url).data return certs_resp["public_key"]
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def triple(n): """ (number) -> number Returns triple a given number. >>> triple(9) 27 >>> triple(-5) -15 >>> triple(1.1) 3.3 """ one = n * 3 return (one)
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import hashlib def md5_bytes(data: bytes): """ generate md5 hash of binary. """ return hashlib.md5(data).hexdigest()
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import shlex def expand_file_arguments(argv): """ Any argument starting with "@" gets replaced with all values read from a text file. Text file arguments can be split by newline or by space. Values are added "as-is", as if they were specified in this order on the command line. """ new_args = [] ...
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def hosts_loader(filename: str) -> dict: """ Loads host mapping file :param str filename: path to file :return: mapping as dictionary """ return_dict = {} with open(filename) as mapfile: lines = [ line.strip() for line in mapfile if not line.startswith('#') and l...
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from zlib import crc32 def safe_crc(string): """64 bit safe crc computation. See http://docs.python.org/library/zlib.html#zlib.crc32: To generate the same numeric value across all Python versions and platforms use crc32(data) & 0xffffffff. """ return crc32(string) & 0xffffffff
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def iterator_strategy(cube, axis=None): """ Guess the most efficient iteration strategy for iterating over a cube, given its size and layout Parameters ---------- cube : SpectralCube instance The cube to iterate over axis : [0, 1, 2] For reduction methods, the axis that is ...
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def SetupSurfaceAndBuriedResiduesSelection(SurfaceResiduesNums, BuriedResiduesNums): """Setup PyMOL selection for surface and buried residues.""" SurfaceResiduesSelection, BuriedResiduesSelection = [None] * 2 UseSurfaceResidueNums, UseBuriedResidueNums = [False] * 2 SurfaceResiduesCount = len(Surf...
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def __newobj__(cls, *args): """ Unpickles new-style objects. """ return cls.__new__(cls, *args)
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def format_number(num): """Return a number representation with comma separators.""" snum = str(num) parts = [] while snum: snum, part = snum[:-3], snum[-3:] parts.append(part) parts.reverse() return ",".join(parts)
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def invert_dict(dct: dict) -> dict: """Invert dictionary, i.e. reverse keys and values. Args: dct: Dictionary Returns: Dictionary with reversed keys and values. Raises: :class:`ValueError` if values are not unique. """ if not len(set(dct.values())) == len(dct.values())...
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def sort_list(coord_list): """ Return a sorted list of coordinates, by y, then x """ return sorted(coord_list, key=lambda k: [k[1], k[0]])
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