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from typing import List from typing import Union from typing import Tuple def linear_search(arr: List[Union[int, float, str]], ele: Union[int, float, str]) -> Union[Tuple[bool, int], Tuple[bool, None]]: """Linear search algorithm Args: arr (List[Union[int,float,str]]): array list to search el...
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def _calculate_total_mass_(elemental_array): """ Sums the total weight from all the element dictionaries in the elemental_array after each weight has been added (after _add_ideal_atomic_weights_()) :param elemental_array: an array of dictionaries containing information about the elements in the system ...
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def _cleave( sequence, sites, missed_cleavages, min_length, max_length, semi, clip_nterm_met, ): """Digest a protein sequence into its constituent peptides. Parameters ---------- sequence : str A protein sequence to digest. sites : list of int The cleavag...
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def find_link_href(links: list, rel: str) -> str: """Extract link href by rel for linkdto instances.""" return next(l for l in links if l.rel == rel).href
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def is_odd(num: int) -> bool: """Returns true when num is odd Added in version: 0.1.0 """ return num % 2 != 0
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def base_url(host, port): """ base url for unit test invocation of api """ return f"http://{host}:{port}"
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import os def create_subdir(path: str) -> str: """ Creates the folder directory Args: path (str): the folder to be created Returns: str: the path string """ if not os.path.exists(path): os.makedirs(path, exist_ok=True) return path
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def mergedicts(dictionary1, dictionary2): """ merges merge_dict into main_dict """ output = {} for item, value in dictionary1.iteritems(): if item in dictionary2: if isinstance(dictionary2[item], dict): output[item] = mergedicts(value, dictionary2.pop(item)) ...
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def calculate_weights(errs): """ Revers weights calculation. Weight of estimator established this way: 1) calculate proportion of error for estimator in comparison to sum of errors of estimators 2) take power of -1 from the proportion 3) calculate linear equation (a_1 + a_2 +...+ a_n)x=1, where ...
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def date_mapper(date: float): """ map all dates from 20140101 to increasing naturals every month """ date /= 100 month = int(date) - int(date / 100) * 100 date /= 100 year = int(date) - 2014 return year * 12 + month
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def _no_spaces(string, replace_with='_'): """ Remove whitespace from a string, replacing chunks of whitespace with a particular character combination (replace_with, default is underscore) """ return replace_with.join(string.split())
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def desc(x): """Return array sorted in descending order.""" return x.sort_values(ascending = False).reset_index(drop = True)
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def fuzzy_search(needle, haystack): """ 判断是否符合模糊匹配的规则,实测性能不如 viml 的实现 """ flag = 1 tlen = len(haystack) qlen = len(needle) if qlen > tlen: return 0 elif qlen == tlen: if needle == haystack: return 1 else: return 0 else: needle_l...
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import os import shutil import sys def command_copytree(args): """ Copy one or more source directory(s) below a destination directory. Parts of the destination directory path are created if needed. Similar to the UNIX command: 'cp -R srcdir destdir' """ for srcdir in args.srcdirs: base...
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def set_swfac(name: str) -> float: """ name is cfmt.vocalfont.name :param name: :return: """ swfac = 1.0 if name == "Times-Roman": swfac = 1.00 if name == "Times-Bold": swfac = 1.05 if name == "Helvetica": swfac = 1.10 if name == "Helvetica-Bold": ...
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import requests def get_apod_data(api_key: str, download: bool = False, path: str = ".") -> dict: """ Get the APOD(Astronomical Picture of the day) data Get your API Key from: https://api.nasa.gov/ """ url = "https://api.nasa.gov/planetary/apod" return requests.get(url, params={"api_key": api_...
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import re def _read_doc_text_strings(data): """Use a heuristic to read in the document text. This is used as a fallback if reading the text with libreoffice fails. @param data (str) The read in Office file (data). @return (tuple) A 2 element tuple where the 1st element is the strings grabbed fro...
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def __discretizePoints(x,cut_points): """ Function to discretize a vector given a list of cutpoints. This function dicretizes a vector given the list of points to cut :param x: a vector composed by real numbers :param cut_points:a list with the points at which the vector has to be cut :return: A...
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def get_total_number(record_list): """获取总数""" num = 0 for _, v in record_list.items(): num += v return num
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import numpy def gen_fock_1p(h1, cholvec, rdm1a, rdm1b): """Generalised Fock matrix for 1-particle excitation. F[s,p,q] = < c_{ps} {H,c_{qs}^+} > """ nmo = rdm1a.shape[0] assert len(cholvec.shape) == 3 assert cholvec.shape[1] * cholvec.shape[2] == nmo*nmo nchol = cholvec.shape[0] # C...
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import csv def load_cand_genes_file(file_name, format=1): """ Loads a candidate gene list from a csv file... """ f = open(file_name, "r") #print(f.readline()) reader = csv.reader(f) tair_ids = [] gene_names = [] if format == 1: for row in reader: tair_ids.append...
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import time def timestamp(): """ Return our standard timestamp, the unix epic seconds, accurate to 4 decimal places. :return: str """ return float('{0:.4f}'.format(time.time()))
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import json import logging def parse_monitoringlist_positions(args, str_name="monitor_coords", list_name="monitor_list"): """Loads a list of monitoringlist (RA,Dec) tuples from cmd line args object. Processes the flags "--monitor-coords" and "--monitor-list" NB This is ...
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import hashlib import os def verify_hashes(packages, archives, hash_alg='md5'): """ Loop through all given package objects and compare the hashes with hashes in package archive. Any hash that is supported by Python's hashlib can be used for comparison. In the interest of speed, files are iterated in...
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import time def timestamp(): """ 得到当前时间戳,16位十进制数 :return: 16 位十进制时间戳 """ return int(round(time.time() * 1000000))
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from typing import Dict from typing import Any def __get_cumulative_cases_count(data_json: Dict[str, Any]) -> int: """ Returns the cumulative number of cases stored in the given data point. """ try: return data_json["cumCasesByPublishDate"] except KeyError: return 0
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def python_parser_only(request): """ Fixture all of the CSV parsers using the Python engine. """ return request.param()
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import glob import os def maj_min_to_blk(major, minor): """ Returns the block device name to the major:minor numbers in the param. :param major: The major number of the device :param minor: The minor number of the device :returns: Block device name. :rtype: ``s...
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def recover_escape(text: str) -> str: """Converts named character references in the given string to the corresponding Unicode characters. I didn't notice any numeric character references in this dataset. Args: text (str): text to unescape. Returns: str: unescaped string. """ ...
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def greetings(): """This allows for testing server health using minimal resources""" return 'Hello World!'
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def load(fn): """Ensure that class will be initialized before method call.""" def inner_wrapper(self, *args, **kwargs): self.load() return fn(self, *args, **kwargs) return inner_wrapper
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def compareTo (intValue1, intValue2): """Compares two integers. Assignment: This functions returns -1 if intValue1 is less than intValue2, returns 1 if intValue1 is greater than intValue2, or returns 0 if intValue1 is equal to intValue2. :param intValue1: The first integer to be compared :...
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def direction_decision(i,acc_dir,west_names,east_names,acc_info_full): """ Check whether an input column (acc_dir) from the full accident dataframe (acc_info_full) contains informative information with regard to direction """ # Replace such inputs as 'I-84' with 'I 84', and split item...
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from numpy.linalg import pinv def CFS(Phi, y_train): """ Return weights of linear regression using closed form solution. Args: Phi -- N x M -- float: Design matrix. y_train -- N -- float: Labels for training. Returns: w -- M -- float: Updated weights. """ # C...
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def shape_logits(raw_logits): """ Shape logits for logsumexp. """ return raw_logits.view(raw_logits.shape[0], -1, 2)
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def pc_settings_filename(): """ :return: The settings file for PackagesManager """ return 'PackagesManager.sublime-settings'
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def get_copy(o, copy): """Returns copy of object.""" if copy: return copy(o) else: return o
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def games_list(self, _): """ :return: list """ lst = [{ 'name': self.temp.games[i].name, 'creator': self.temp.games[i].creator, 'players': len(self.temp.games[i].players), 'slots': self.temp.games[i].slots, 'config': self.temp.games[i].config } for i in self.t...
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def get_ip_context(data): """ provide custom context information about ip address with data from Expanse API """ geo = {} if len(data.get('locationInformation', [])) > 0: if (data['locationInformation'][0].get('geolocation', {}).get('latitude') is not None and data['locationInform...
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from typing import Dict from typing import Tuple def calc_nsplits(chunk_idx_to_shape: Dict[Tuple[int], Tuple[int]]) -> Tuple[Tuple[int]]: """ Calculate a tiled entity's nsplits. Parameters ---------- chunk_idx_to_shape : Dict type, {chunk_idx: chunk_shape} Returns ------- nsplits ...
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import random def crossover(chromosome1, chromosome2): """ Funcao para realizar o crossover entre dois cromossomos :param: chromosome1 - cromossomo pai :param: chromosome2 - cromossomo mae :return: new_chromosome1 - primeiro filho gerado no crossover :return: new_chromosome...
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import typing def IndentList(num_spaces: int, strings: typing.List[str]) -> typing.List[str]: """Indent each string in a list of strings by a number of spaces. Args: num_spaces: The number of spacces to indent by. Must be greater than or equal to zero. strings: The list of strings to indent. ...
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def overlapped_slices(bbox1, bbox2): """Slices of bbox1 and bbox2 that overlap Parameters ---------- bbox1: `~scarlet.bbox.Box` bbox2: `~scarlet.bbox.Box` Returns ------- slices: tuple of slices The slice of an array bounded by `bbox1` and the slice of an array bounded ...
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import math def __uto__(hf, han, tempd, rti_m, rto_m, rco_m, rci_m, rwb_m, ke_wmc, kcem_wmc, kt_wmc): """ Общий коэффициент теплопередачи, состоящий из нескольких частей :param hf: конвективный коэффициет теплоотдачи в НКТ, Ватт / м2 / С :param han: конвективный коэффициет теп...
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import sysconfig def get_openrk_object_name(): """Returns the name of the main openrk shared library object""" ext_suffix = sysconfig.get_config_var('SOABI') if ext_suffix is None: filename = '_openrk.so' else: filename = '_openrk.{0}.so'.format(ext_suffix) return filename
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import re def get_glyph(text): """ get the glyph from text Return a tuple of (glyph, font) from the provided text. raise an error if one of them does not exist :param text: The text to transform (e.g. "fa fa-folder") """ # split the icon name to find the name inside m = re.match(r"^(fab...
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import os def protected_path(path): """ Take a path, and if the file/dir exist pass back a protected path (suffixed). Returns: string = new file path Example: >>> mypath = '/tmp' >>> new_path = helpers.protected_path(mypath) >>> new_path '/tmp.0' """...
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def remove_possible_title_from_text( text: str, title: str, min_title_length: int = 3, overlap_ratio: float = 0.5 ) -> str: """ Remove title from text document. :param text: text string :param title: title to remove :param min_title_length: minimum length of title to rem...
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def format_list(list1, fmt = '%16s', delimiter = ","): """ format list of numbers to string. delimiter defaults = ',' """ string1 = delimiter.join(fmt % h for h in list1) + '\n' return string1
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import os import pickle def get_local_config_param(key, force_update=False): """ Read the local config file to find a parameter. If it's not found, ask for it and store it for the future. :param key: What to get :param force_update: Ask the user regardless of if it's already been stored, and...
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from typing import List def piecewise_volume_conversion( ul: float, sequence: List[List[float]]) -> float: """ Takes a volume in microliters and a sequence representing a piecewise function for the slope and y-intercept of a ul/mm function, where each sub-list in the sequence contains: ...
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from typing import Any def add_price_in_dollars(row: Any) -> float: """ Calculate the price in dollars by converting the value of the 'priceInCents` to dollars. Args: row: The pandas row to be analysed Raises: N/A Returns: dollars: The price in dollars, calculated from the...
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from argparse import ArgumentParser, ArgumentDefaultsHelpFormatter def get_parser(): """Get parser object for gen_prob_dist.py.""" parser = ArgumentParser(description=__doc__, formatter_class=ArgumentDefaultsHelpFormatter) parser.add_argument("-n", dest=...
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def command_not_found(): """非关键词回复""" return u"未识别指令!\n"
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import math def square_image_shape_from_1d(filters): """ Make 1d tensor as square as possible. If the length is a prime, the worst case, it will remain 1d. Assumes and retains first dimension as batches. """ height = int(math.sqrt(filters)) while height > 1: width_remainder = filters % height if ...
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def filter_per_split(dataset, train=True): """ Filter samples depending on their split """ return dataset['is_train'] if train else ~dataset['is_train']
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def has_dependencies(node, dag): """Checks if the node has dependencies.""" for downstream_nodes in dag.values(): if node in downstream_nodes: return True return False
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import numpy def _is_not_skewed(sicd, dimension): """ Check if the sicd structure is not skewed along the provided dimension. Parameters ---------- sicd : SICDType dimension : int Returns ------- bool """ if dimension == 0: if sicd.Grid is None or sicd.Grid.Row i...
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def pluralize(noun, quantity): """ Returns a pluralization of a noun preceded by its quantity by suffixing a morpheme (limited to the regular plural morphemes 's' and 'es'). :param noun: The noun to be pluralized. :type noun: str :param quantity: The quantity of the noun. :type quantity...
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def count_kmers(seq, k=3): """Returns the Count or Frequency of Kmers generated in a sequence""" # Start with an empty dictionary counts = {} # Calculate how many kmers of length k there are num_kmers = len(str(seq)) - k + 1 # Loop over the kmer start positions for i in range(num_kmers): ...
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def static_vars(**kwargs): """ Custom decorator to allow declaration of static variables like this:\n @static_var(variable = 0)\n def foo(parameters):\n foo.variable += 1 """ def decorate(func): for k in kwargs: setattr(func, k, kwargs[k]) return func retu...
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import sys def get_custom_platform(): """ This method gets the custom name of platform ( operating system) :return: ``name of the operating system`` :rtype: ``string`` """ _platform = sys.platform if _platform.startswith('linux'): platform = 'linux' elif _platform.startswith('d...
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def margcond_str(marg, cond): """ Returns a name from OrderedDict values in marg and cond """ marg = list(marg.values()) if isinstance(marg, dict) else list(marg) cond = list(cond.values()) if isinstance(cond, dict) else list(cond) marg_str = ','.join(marg) cond_str = ','.join(cond) return '|'.join([marg_st...
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import re def realname(module_name): """ Return the real name of a module. The real name of a modules is in lower snake_case. Transform a CamelCase name into snake_case name. """ reg_first = re.compile(r'(.)([A-Z][a-z]+)') reg_all = re.compile(r'([a-z0-9])([A-Z])') s1 = reg_first.sub(r...
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def init_model(ratios, sizes): """Initialize the hconstant parameter for each word and populate the model dict ratios: the ratios dict, nothing new sizes: the sizes dict returns: the updated ratios dict & the initialized model """ model = {} for word in ratios.keys(): ratios...
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def is_callback(func): """Check if function is callback.""" return "_pyhap_callback" in getattr(func, "__dict__", {})
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def has_points(user, points): """Returns True if the user has more than the specified points.""" return user.get_profile().points() >= points
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def get_fig_size(ratio=None, scale=None): """Get size of figure given a ratio and a scale. Parameters ---------- ratio: float Something like 16:9 or 4:3 scale: float A multiplicative factor to ccale the original figure keeping its ratio""" ratio = 4 / 3.0 if ratio is None else r...
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def _residual_block(input_tensor, block_function, filters, num_blocks, strides=(1, 1), is_first_layer=False, norm='group', training=True): """Builds a residual block with repeati...
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def is_article_link(wikilink): """Return True is wikilink is an article link. Parameters ---------- wikilink : str Wikilink to be tested Returns ------- result : bool True is wikilink is an article link Examples -------- >>> is_article_link('[[Danmark]]') T...
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def goldsteinpriceFunction(x): """ subject to −2 ≤ xi ≤ 2. The global minimum is located at x∗ = f(0,−1), f(x∗) = 3. """ x1 = x['IndPosition0'] x2 = x['IndPosition1'] term1 = (x1 + x2 + 1)**2 term3 = (2*x1 - 3*x2)**2 goldsteinpricefunction = (1 + term1*(19 - 14*x1 +3*x1**2 - 14*x2 + 6*x1...
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def find_disappeared_numbers(nums): """ :type nums: List[int] :rtype: List[int] """ for i in range(len(nums)): index = abs(nums[i]) - 1 nums[index] = - abs(nums[index]) return [i + 1 for i in range(len(nums)) if nums[i] > 0]
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from bs4 import BeautifulSoup def equation(latex: str, id=None): """Creates a numbered equation using the <equation> tag.""" if not isinstance(latex, str): raise TypeError(f'<latex> must be a string containing the latex code for the equation, received object of type {type(latex)}.') tag = BeautifulSoup(features=...
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def timeToSeconds(d: int = 0, h: int = 0, m: int = 0, s: float = 0.0) -> float: """ Return 'seconds' representation of a given time as defined by days, hours, minutes and seconds. Args: d: number of days to add to returned seconds. h: number of hours to add to returned seconds. m: n...
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def get_command_text(txt): """Возвращает пользовательский текст после /команды или пустоту""" r = txt.split(' ', 1) return r[1][0:1024] if len(r) > 1 else ''
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def dicts_are_consistent(d1: dict, d2: dict) -> bool: """ checks if all items whose keys are in (d1 and d2) are equal. returns bool. """ return all(d1[k] == d2[k] for k in set(d1).intersection(set(d2)))
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def get_number_line(selected_file: str) -> int: """ Return a int with the number line from sentences.txt """ with open(selected_file) as f: return sum(1 for line in f)
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import numpy as np def parse_neb_results(file, traj_in): """ Parses NEB.results :param: file: NEB results :param: traj_in: TrajectoryData object with final MEP images :return: Extended trajectory object with NEB data arrays and estimation of barrier, and number of iterations. ""...
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def make_cvss_scores(metrics): """ [ { "cvss_v2": { "base_metrics": { ... }, "vector_string": "AV:N/AC:L/Au:N/C:P/I:P/A:P", "version": "2.0" }, "cvss_v3": { "base_metrics": { ... ...
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def order_dict(data): """ Order dict by default order """ return {k: order_dict(v) if isinstance(v, dict) else v for k, v in sorted(data.items())}
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def get_spv_data(my_core, entityset_ranges, global_id): """ Gets the actual data for surfaces per volume i.e. the number of surfaces each volume handle contains, as well as the Global ID for the volume inputs ------ my_core : a MOAB Core instance spv_data : a dictionary containing ev...
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def zip_search(): """ Return: valid USA ZIP code used as 'payload' variable. Description: Loop until user input is a valid ZIP code, then return. """ lock = True while lock: try: i_o = int(input('Please enter ZIP code\n-->>> ')) # based on file 'zip-codes.txt' in ...
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import os def setup_download_dir(directory): """ 设置文件夹,文件夹名为传入的 directory 参数,若不存在会自动创建 """ if not os.path.exists(directory): try: os.makedirs(directory) except Exception as e: pass return True
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def read_input(path: str): """ Read game board file from path. Return list of str. """ with open(path, mode='r', encoding='utf-8') as data: content = data.readlines() for i in range(len(content)): content[i] = content[i].strip() return content
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def _GetProcStatusPath(pid): """Returns the path for a PID's proc status file. @type pid: int @param pid: Process ID @rtype: string """ return "/proc/%d/status" % pid
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def part1(data): """ >>> three = [ ... SnailfishNumber([[[0,[5,8]],[[1,7],[9,6]]],[[4,[1,2]],[[1,4],2]]]), ... SnailfishNumber([[[5,[2,8]],4],[5,[[9,9],0]]]), ... SnailfishNumber([6,[[[6,2],[5,6]],[[7,6],[4,7]]]]), ... SnailfishNumber([[[6,[0,7]],[0,9]],[4,[9,[9,0]]]]), ... ...
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import base64 def to_base16(data): """ 把字符串转换成BASE16编码 :param data: 字符串 :return: BASE16字符串 """ return base64.b16encode(data)
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import torch def pad_batch(batch, padding_id, device='cpu', return_lengths=True): """ Pad batch into tensor """ lengths = [len(example) for example in batch] maxlen, batch_size = max(lengths), len(batch) output = torch.zeros( maxlen, batch_size, device=device, dtype=torch.int64 ) +...
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import os def default_config_filename(): """ Return the default filename for storing Weibo keys. """ home = os.path.expanduser("~") return os.path.join(home, ".weibowarc")
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import torch def gaussian_radius(det_size, min_overlap=0.5): """Get radius of gaussian. Args: det_size (tuple[torch.Tensor]): Size of the detection result. min_overlap (float): Gaussian_overlap. Defaults to 0.5. Returns: torch.Tensor: Computed radius. """ height, width = ...
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from sys import stderr def filter_blast_file(blast_file, reciprocated_table, subject_index): """Filter blast file by reciprocal orthologs""" filtered_blast = [] with open(blast_file) as blast: for x, line in enumerate(blast): if ( (x+1)%10000 == 0 ): stderr.write...
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def action_of(origin: str, destination: str) -> int: """Finds which action was taken from origin to destination. If the states origin and destination are separated by one action, it returns the numeric value of the action taken (0 = up, 1 = right, 2 = down, 3 = left). It returns -1 if they are separate...
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import sqlite3 def get_gene_annotations(database): """ Create a dictionary linking each TALON gene ID to its human-readable name and accession ID """ gene_name = {} gene_ID = {} with sqlite3.connect(database) as conn: conn.row_factory = sqlite3.Row cursor = conn.cursor() ...
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def title(name): """ Write title keyword""" return [f'*TITLE\n{name:s}\n']
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def cli(ctx, library_id="", name="", deleted=False): """Get all the libraries or filter for specific one(s) via the provided name or ID. Provide only one argument: ``name`` or ``library_id``, but not both. Output: list of dicts each containing basic information about a library """ return ctx.gi.librar...
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def slice_state(arr, hidden_dim): """ Used to slice the final state of GRU, LSTM to the suitable part """ part = 0 if arr.ndim == 2: return arr[:, part * hidden_dim:(part + 1) * hidden_dim] elif arr.ndim == 3: return arr[:, :, part * hidden_dim:(part + 1) * hidden_dim] else: ...
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def get_resource_requests_from_networktab(networktab): """ Parse `networktab` to extract only `ResourceSendRequest` information. """ events = networktab['traceEvents'] network_events = [] for event in events: if event['name'] == 'ResourceSendRequest': network_events.append(ev...
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def heap_sort(heap): """堆排序,将根节点取出与最后一位对调,对前面len-1个节点继续进行对调过程 heap_sort 耗时:520 毫秒 """ def max_heap(heap, heapsize, root): """ 调整堆的结构,使其父节点的值大于子节点的值 """ left = 2 * root + 1 right = left + 1 large = root if left < heapsize and heap[large] < heap[le...
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def Vdiode(Icell, Vcell, Rs): """ Calculate Vdiode from current, voltage and series resistance. :param Icell: cell current [A] :param Vcell: cell voltage [V] :param Rs: cell series resistance [:math:`\Omega`] :return: diode voltage [V] """ return Vcell + Icell * Rs
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from functools import reduce import operator def product(iterable): """ Returns the product of an iterable If the list is empty, returns 1 """ product = reduce(operator.mul, iterable, 1) return product
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