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def newB(m, point): """find the y-intersection that the function/point pair passes through""" b = (point[1] - (m * point[0])) return b
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import torch from typing import Tuple def orthonormalize( vecs: torch.Tensor, eps: float = 1e-9 ) -> Tuple[torch.Tensor, torch.Tensor]: # pragma: no cover """ :param vecs: tensor of shape [n, m] with n <= m :return: (base, expand) base.shape[1] == m expand.shape[1] == m base....
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import math def CORMSE(X,Y): """ caculate the RMSE of X and Y """ num=len(X) if len(X)!=len(Y) or len(X)==0: print ("list X and list Y have different length!") RMSE=9999.0 return RMSE else: wucha=0.0 for i in range(num): wucha=wucha+ math.pow((X[i]...
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import shlex import subprocess def run_command(cmd): """Run a command""" lexed = shlex.split(cmd) proc = subprocess.Popen(lexed) proc.communicate() return proc.returncode
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import filecmp from typing import Tuple from typing import Set import os def dircmp_recursive(dircmp_obj: filecmp.dircmp) -> Tuple[Set[str], Set[str], Set[str]]: """ Compare the content of two directories, recursively. :param dircmp_obj: the filecmp.dircmp object. :return: three sets: - the set ...
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def char2idx(data): """char2idx function creates look-up table for the corresponding ids for the labels""" tag2idx = {t: i for i, t in enumerate(data)} return tag2idx
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def cfact(n: int) -> int: """ >>> cfact(5) 120 """ if n == 0: return 1 return n*cfact(n-1)
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import math def computeStartsOfInterval(maxVal: int, intervalLength=1024, min_overlap_part=0.33): """ Divide the [0; maxVal] interval into a uniform distribution with at least min_overlap_part of overlapping :param maxVal: end of the base interval :param intervalLength: length of the new intervals ...
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def bc_dict_seq2id(bc_index_fpath, col_seq=None): """ dict[barcode_seq] = barcode_id """ if col_seq is None: col_seq = 0 out = dict() with open(bc_index_fpath, 'rt') as fin: # next(fin) # remove header # out = list(map(lambda row: row.strip().split(), fin)) # out = {row[...
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def checkPrefix(mainList, inputGTParams): """ Compares two input GTs to see if they have the same prefix. Returns the index in the internal list of GTs of the match or -1 in case of no match. """ if inputGTParams.find("_") == -1: raise Exception("Invalid GT name. It does not contain an _, it cannot ...
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def currency(value): """ Returns a string currency representation of a float """ return '${:,.2f}'.format(value)
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def tensor_to_complex_np(data): """ Converts a complex torch tensor to numpy array. Args: data (torch.Tensor): Input data to be converted to numpy. Returns: np.array: Complex numpy version of data. """ data = data.numpy() return data[..., 0] + 1j * data[..., 1]
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def load_password(kp, title): """ :param kp: объект PyKeePass :param title: название записи :return: записи с указанным названием """ entries = kp.find_entries(title=title) passwords = '' for ent in entries: passwords += 'log: ' + ent.username + ', pass: ' + ent.password + '\n' ...
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def should_reduce_batch_size(exception: Exception) -> bool: """ Checks if `exception` relates to CUDA out-of-memory, CUDNN not supported, or CPU out-of-memory Args: exception (`Exception`): An exception """ _statements = [ "CUDA out of memory.", # CUDA OOM "cuDN...
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def substlab(template, lab_path, lab_file): """Read template and substitute labs""" with open(template, 'r') as temp: t = temp.readlines() i = t.index('%TEMPLATE_INSERT\n') t.insert(i+1, '\\subimport{{{0}/}}{{{1}}}\n'.format(lab_path.replace('\\', '/'), lab_file)) return t
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import torch def is_tensor(data): """Checks if data is a torch tensor.""" return type(data) == torch.Tensor
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import imp def load_module_file(module_name, file_path): """Load module given name and path.""" with open(file_path, 'r') as f: return imp.load_module(module_name, f, "%s.py" % module_name, (".py", "r", imp.PY_SOURCE))
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def validate_generic(input_string): """ Always return true, we can't really validate a format that a developer defined in an arbitrary way. :param input_string: The string to validate :return: True """ return True
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def numeric_range(numbers): """Calculates the difference between the min and max of a given list Args: numbers: A list of numbers Returns: The distance of the minimax """ numbers = sorted(list(numbers)) return (numbers[len(numbers) - 1] - numbers[0]) if numbers else 0
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def equals(arg1, arg2): """ check if two object equal >>> equals('a', 'b') """ if arg1 == arg2: return True if (arg1 is None) or (arg2 is None): return False return arg1.__eq__(arg2)
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import inspect def get_kwarg_names(func): """ Return a list of valid kwargs to function func """ sig = inspect.signature(func) kwonlyargs = [p.name for p in sig.parameters.values() if p.default is not p.empty] return kwonlyargs
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def map_postorder(lamark_ast, visit_func): """Maps a function over a LaMark AST. The visit_func takes in one node and returns a node. The returned node replaces the original node in the AST. Returning None leaves the node unchanged. """ new_children = [] for node in lamark_ast.get_children...
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def DoesDatabaseExist(client_vm, connection_string, database_name): """Returns whether or not the specifid database exists on the server. Args: client_vm: client vm which will run the query connection_string: database server connection string understood by psql database_name: name of database to check ...
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def _synapse_error_msg(ex): """ Format a human readable error message """ if isinstance(ex, str): return ex return '\n' + ex.__class__.__name__ + ': ' + str(ex) + '\n\n'
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def prices_from_returns(returns): """ Calculate the pseudo-prices given returns. These are not true prices because the initial prices are all set to 1, but it behaves as intended when passed to any PyPortfolioOpt method. :param returns: (daily) percentage returns of the assets :type returns: pd...
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import re def preprocess(text): """ remove unwanted characters fom a string """ text = re.sub(r"\n|\t|”|“|'|\xa0|[Bb]y", " ", text) text = re.sub(r'"', " ", text) text = re.sub(r" +", " ", text) return text
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def do_complicated_mathematics() -> int: """Do complicated mathematics. Returns: int: The result """ return 1 + 1
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def new_duplicate_dict(d): """ Create a duplicate of the given dictionary """ d1 = {} for p in d.keys(): d1[p] = d[p] return d1
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import os def get_local_files(array_of_files): """Get local files""" localArr = [] for i in array_of_files: if os.name == "posix": temp = os.getcwd() + "/" + str(i) else: temp = os.getcwd() + "\\" + str(i) localArr.append(temp) return localArr
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def cleanup_url(url: str) -> str: """Cleans up the text to be a valid URL. Returns: str: The cleaned up URL. """ url = url.replace(" ", "-") if url.startswith("http://") or url.startswith("https://"): return url else: return f"https://{url}"
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def results(person, result, rate): """ Checks if the current person is in the dict, if not adds them with their current rate if they are, adds the current rate to the current person :param person: the current person :param result: the output result :param rate: the current tax rate :return: ...
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def generate_four_vertices_from_ref_vertex(ref, img_sz): """ Generate four vertices from top-left reference vertex. :param ref: :param img_sz: :return: """ pt_tl = [int(img_sz[0] * ref[0]), int(img_sz[1] * ref[1])] # pt_tr = [int(img_sz[0]), pt_tl[1]] pt_tr = [int(img_sz[0] - pt_tl[0...
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import argparse def udaq_argparser(): """Function to get arguments from string and parse them into single python dictionary. """ parser = argparse.ArgumentParser() # Define parser mandatory arguments. parser.add_argument('--port', type=str, help='path to serial device port e.g. /dev/ttyUSB0') ...
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from typing import Optional from datetime import datetime def _date_repr(val: Optional[datetime]) -> str: """Print a datetime in a compact format.""" if val is None: return str(val) return val.isoformat()
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def prefix(symbol: str, value: float, accuracy=2): """ Input: symbol to add, value Output rounded value with scientific prefix as string """ if value >= 900000000: prefix = " G" value = value / 1000000000 elif value >= 900000: prefix = " M" value = value / 100000...
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import hashlib def hash_object(*objects, hasher=None): """Hash the given object(s) and return the hashlib hasher instance If no hasher argument is provided, then automatically created a hashlib.md5() """ if hasher is None: hasher = hashlib.md5() for obj in objects: if...
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import math def shannon_entropy(p): """Computes the Shannon Entropy at a distribution in the simplex.""" s = 0. for i in range(len(p)): try: s += p[i] * math.log(p[i]) except ValueError: continue return -1.*s
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import torch def Ax(A, x): """Returns the Matrix-vector product Ax. Arguments: A (function or torch.Tensor): Matrix-vector product function or explicit matrix. x (torch.Tensor): A vector. """ if callable(A): Ax = A(x) else: Ax = torch.mm(A, x) ...
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def get_etr_d_t(q_out_H_hs_d_t, q_max_H_hs): """圧縮機の圧縮効率 (5) Args: q_out_H_hs_d_t(ndarray): 熱源機の平均暖房出力 (kW) q_max_H_hs(float): 熱源機の最大暖房出力 (W) Returns: float: 圧縮機の圧縮効率 """ tmp = (q_out_H_hs_d_t * 1000 / q_max_H_hs) return -0.9645 * tmp * tmp \ + 1.245 * tmp \ ...
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def create_pad(size, pad_id): """ Create a padding list of a given size Args: size: nd list shape pad_id: padding index Returns: - padding list of the given size """ if len(size) == 1: return [pad_id for _ in range(size[0])] else: return [create_pad(...
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def get_file_data(path): """ read data from a given file :param path: file path :return: file data """ data = "" try: _file = open(path, 'r') data = _file.read() _file.close() except EnvironmentError as e: print("File operation failed, Error: %s" % e) ...
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def roi_center(roi): """Return center point of an ``roi``.""" def slice_center(s): return (s.start + s.stop) * 0.5 if isinstance(roi, slice): return slice_center(roi) return tuple(slice_center(s) for s in roi)
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import numpy def schechterL(luminosity, phiStar, alpha, LStar): """Schechter luminosity function.""" LOverLStar = (luminosity/LStar) return (phiStar/LStar) * LOverLStar**alpha * numpy.exp(- LOverLStar)
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import textwrap def ssplit(str_, length=420): """ Splits a into multiple lines with a maximum length, without breaking words. :param str_: The string to split. :param length: Maximum line length. """ buf = list() for line in str_.split('\n'): buf.extend(textwrap.wrap(line.rstr...
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import pickle def load_pickle(fpath): """ Given a file path pointing to a pickle file, yields the object pickled in this file""" with open(fpath, 'rb') as fp: return pickle.load(fp)
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import pickle def read_magnitude_catalogue(pkl_data_fname): """Function to read magnitude catalogue output by get_event_moment_magnitudes() into python. Arguments: Required: pkl_data_fname - The filename of the python dict containing the magnitudes information. This is an outp...
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from typing import Counter def get_fine_regions(columns, min_samples=50): """ Select regions that have at least ``min_samples`` samples. Remaining regions will be coarsely aggregated up to country level. """ # Count number of samples in each subregion. counts = Counter() for location in co...
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def check_consecutive(labels): """ Check that the input labels are consecutive and start at zero. """ diff = labels[1:] - labels[:-1] return (labels[0] == 0) and (diff == 1).all()
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import typing import os import stat import mimetypes def detect_filetype(path: str, stat_: typing.Optional[os.stat_result] = None) -> str: """Given a file path, work out what type the file is.""" # pylint: disable=R0912 # Pylint complains that this function has too many branches. # I cannot think of a...
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def validate_ids(data, field='id', unique=True): """ By this method we just return uniq list Actually we use it for {issue_id:xxx order: xxx} We don't really know what to do if we got 2 different order for the same issue. Of course frontend should prevent it. But I decided not raise an Exception for this case. ...
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def merge_dicts(*args, **kwargs): """Outputs a merged dictionary from inputs. Overwrites data if there are conflicts from left to right. :param args: (dict), tuple of input dictionaries :param kwargs: dict, input kwargs to merge :return: dict, combined data. """ data = {} for input_dict in ...
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import random def random_tour(num_of_cities): """ Returns a random valid tour """ tour = list(range(num_of_cities)) random.shuffle(tour) return tour
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def word_freq(words): """ Return dictionary """ index = {} for word in words: if word in index: index[word] += 1 else: index[word] = 1 return index
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def cli(ctx, history_id, purge=False): """Delete a history. Output: An error object if an error occurred or a dictionary containing: ``id`` (the encoded id of the history), ``deleted`` (if the history was marked as deleted), ``purged`` (if the history was pur...
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def is_path_cyclic(node, visited): """ @type G: Graph @param G: our Graph @type node: Vertex @param node: the vertex we are currently visiting @type visited: set @param visited: set of visited paths @rtype: bool @return: if a path is cyclic """ stack = [node] while sta...
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def dash_to_underscore(obj): """ Convert dashes to underscores in an input model object :param obj: The object to convert :return:The converted object """ if isinstance(obj, list): ret_obj = [] for item in obj: ret_obj.append(dash_to_underscore(item)) elif isinsta...
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import six def clear_dict_empty_lists(to_clear_dict): """ Removes entries from a nested dictionary which are empty lists. param to_clear_dict dict: python dictionary which should be 'compressed' return new_dict dict: compressed python dict version of to_clear_dict Hints: recursive """ ne...
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def gcContent(seq): """calculate G/C content of sequence""" gc = seq.count("C") + seq.count("G") gcPercent = 100 * (float(gc) / len(seq)) return int(round(gcPercent))
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def per_hour_to_per_second(per_hour): """ Transform a per hour rate to a per second rate. :param per_hour: quantity per hour """ return per_hour / 3600
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from pathlib import Path import pandas def read_repos(fn: Path, sheet: str) -> dict[str, str]: """ make pandas.Series of email/id, Git url from spreadsheet Parameters ---------- fn : pathlib.Path path to Excel spreadsheet listing usernames and repos to duplicate sheet : str na...
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def decide_produced(desc): """Based on the provided description, determine the ActivityProducedBy.""" if 'Production' in desc: return desc.split('Production')[0].strip() return 'None'
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from typing import Counter def preprocess(text): """ Converts any puctuation into tokens, creates a counter dictionary of the data, and trims the data dictionary of words with occurrances less than five Input: * text: a text file containing words Output: * returns a trimmed counter dictionary of tokeniz...
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def shekel_gradient(point, p, matrix_test, C, b): """ Compute Shekel gradient at a given point with given arguments. Parameters ---------- point : 1-D array with shape (d, ) A point used to evaluate the gradient. p : integer Number of local minima. matrix_test : 3-D arra...
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import shlex import os def _is_dryrun( cmd ): """ If the environment defines COMMAND_DRYRUN to an empty string or to the value "1", then this function returns True, which means this is a dry run and the command should not be executed. If COMMAND_DRYRUN is set to a nonempty string, it should be a ...
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import re def __valid_word(word, stopword, language): """ Check if the word is in the stopword list Return a boolean word = string stopword = stopword object (cf stopwords.py) language = string (french or english) """ # print(word) # print(language) # print(word not in stopword...
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import re def clean_fieldname(text: str) -> str: """ Sanitizes input and yields safe ascii strings. """ if text == 'root': return '_root' return re.sub(r"(^[^A-Za-z_]|[^A-Za-z0-9_])", "_", text)
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def ignore_filter(topics): """filter topics starts with !""" result = [t for t in topics if not t['title'].startswith('!')] for topic in result: more_topics = topic.get('topics', []) topic['topics'] = ignore_filter(more_topics) return result
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import random def get_jumbled_text(text): """ Return jumpled version of text. """ text = text.split(" ") jumbled = "" while len(text) > 0: word = random.choice(text) del text[text.index(word)] jumbled += (word + " ") return jumbled.strip()
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def point_in_rectangle(point, rectangle): """ Determine if the given point is inside the rectangle Args: point(tuple): tuple of points x and y rectangle Returns: bool: True if point in the rect, False otherwise """ left_sides = 0 for i in rang...
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import time import os def is_younger(path, age, default=False): """ Args: path (str | Path): Path to file age (int | float | None): How many seconds to consider the file too old default (bool): Returned when file is not present Returns: (bool): True if file exists and is y...
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import math def get_conv_output_shape(in_shape, kernel, stride=1, padding=0, dilation=1, out_channels=32): """ infer output shape after 1 layer of conv reference: https://pytorch.org/docs/stable/nn.html#torch.nn.Conv2d """ _, h, w = in_shape out_h = math.floor( (h + 2 * padding - dilation...
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import re def parsePWDResponse(response): """ Returns the path from a response to a PWD command. Responses typically look like:: 257 "/home/andrew" is current directory. For this example, I will return C{'/home/andrew'}. If I can't find the path, I return L{None}. """ match = r...
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import time from datetime import datetime def get_tlim(*times): """ Create mask for user-defined time range. """ time_list = [] for dt in times: # Convert start date into timestamp dt = time.mktime(dt.timetuple())+dt.microsecond/1e6 # Convert timestamp back local datetime ...
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def p_dictent(p, key, value=3): """dictent : test COLON test""" return key, value
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from argparse import ArgumentParser from argparse import RawTextHelpFormatter import os def get_parser(): """Build parser object""" parser = ArgumentParser(description='First level analysis', formatter_class=RawTextHelpFormatter) parser.add_argument('bids_deriv_dir', action='...
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from typing import List def filter_ipas(sentence: str, ipas_lst: List[str]) -> List[str]: """ filters the list of ipas passed. """ return [sentence for item in ipas_lst if item in sentence]
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def check_subsequence(short, long) -> bool: """ Checking string subsequence recursively @param short: This substring is searching @param long: Here we search in @return: False or None """ try: return check_subsequence(short[1:], long[long.index(short[0])+1:]) except ValueError: ...
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def first(s): """Return the first element of a recursive list s.""" return s[0]
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def get_reference_token(client, name): """Get slack reference token given name Args: client (SlackClient): slack client name (str): member name to search for Returns: (str): slack reference token """ for member in client.api_call('users.list')['members']: if member...
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from typing import Dict import json def get_unambiguous_roots(base_forms_file: str) -> Dict[str, Dict[str, str]]: """Get the list of words repleaceable with an unambiguous lemma. This is a dictionary having the ISO 3-letter code of each language as a key, and as values dictionaries mapping words with the...
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def levenshtein(a: str, b: str) -> int: """Find the levenshtein distance between two strings""" if not len(a): return len(b) if not len(b): return len(a) if a[0] == b[0]: return levenshtein(a[1:], b[1:]) return 1 + min( levenshtein(a[1:], b), levenshtein(a, b...
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import re def _convert_to_regex(input_format: str): """Return regex of input_format.""" return re.compile(input_format.replace("(", "\\(") .replace(")", "\\)") .replace("<artiste>", "(.+)") .replace("<track>", "(\\w+)") .r...
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def replace_white_space_in_column_names_with_and_underscore(df): """ Takes one parameter, the dataframe. """ with_replacement = [i.replace(' ', '_') for i in df.columns] df.columns = with_replacement return df
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def which_one(iterable): """Index of the first True value in an iterable.""" it = enumerate(iterable) i, x = next(it) while not x: i, x = next(it) return i
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def df_matches_slab(slab, df_coord, ): """ """ #| - df_matches_slab num_atoms = slab.get_global_number_of_atoms() num_rows = df_coord.shape[0] same_num = True if num_atoms != num_rows: same_num = False # ##################################################### all_atoms_indice...
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import sys def GetGitCommand(): """Returns a git command that does not need to be executed using shell=True. On non-Windows platforms: 'git'. On Windows: 'git.bat'. """ return 'git.bat' if sys.platform == 'win32' else 'git'
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def readFile(path): """ 读取文件的所有内容为字符串 """ content="" with open(path,encoding="utf-8") as f: content=f.read() f.close() return content
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import operator def apply_constraints(params, constraints): """ Ensure that `params` meet `constraints` `constraints` is a list of (parameter, constraint function, constraint parameter) tuples """ if constraints is None: return True operator_map = { "<": operator.lt, ...
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def _worst_size(str_len): """ Given a string length, what's the worst size that we should grow to """ if str_len == 0: return 0 elif str_len == 1: return 2 elif str_len % 255 in (0, 1): return (str_len / 255) * 2 + str_len + (str_len % 255) else: return ((str_len / 25...
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import subprocess def has_untracked() -> bool: """ Return True if untracked file/folder exists """ result = subprocess.run('git ls-files -zo --exclude-standard'.split(), stdout=subprocess.PIPE) return bool(result.stdout)
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def check_third_bs(fd1, fd2, fd3, fd4, fd5) -> str: """输入5段走势,判断是否存在第三类买卖点 :param fd1: 第N-4段 :param fd2: 第N-3段 :param fd3: 第N-2段 :param fd4: 第N-1段 :param fd5: 第N段 :return: """ zs_d = max(fd1['low'], fd2['low'], fd3['low']) zs_g = min(fd1['high'], fd2['high'], fd3['high']) t...
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from pathlib import Path import subprocess import shutil def rerun_cmd(cmd, outfile, max_ntry=2, subdir_failures='failed_outputs', **run_kwargs): """ rerun r0_to_dl1 process given by `cmd` as long as the exit code is 0 and number of try < max_ntry move the failed output file to subdir failed_outputs ...
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import torch def rotation_from_axis(axis): """ Expects Bx1x3 axis Tensor The axis is x, y, z with the angle being norm(axis). Returns a Bx3x3 rotation matix tensor """ device = axis.device # Trick for batch_size broadcasting theta = torch.norm(axis, p=2, dim=2).view(-1, 1, 1) axis...
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def get_number_of_verb(sentence_token): """Return number of verbs in sentence Args: sentence_token (tuple): contains length of sentence and list of all the token in sentence Returns: int: number of verb in sentence """ number_of_verb = 0 for word in sentence_token[1]: i...
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def partextras(labels): """Return a dictionary of extra labels for use in prompts to the user Intended use is in strings of the form "(l)ocal%(l)s". """ if labels is None: return { "l": "", "o": "", } return { "l": " [%s]" % labels[0], "o": "...
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def chunkify(files_list, chunksize=1000): """ Create a list of chunks. Each chunk is a list itself, with size `chunksize`. Arguments: files_list: list: A list of Path objects chunksize: int: Size of each chunk Return: chunks: list: A list of lists. Each nested list has size ...
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def _trunk(port_data): """Return trunk for specific ifIndex. Args: port_data: Data dict related to the port Returns: trunk: True if port is in trunking mode """ # Initialize key variables trunk = False # Determine if trunk for Cisco devices if 'vlanTrunkPortDynamicSta...
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def get_inline_math(block): """This function will get inline math code and append it to the text """ text = "" lists = block.get("properties")["title"] for list in lists: if list[0] == "⁍": text += "$$"+list[1][0][1]+"$$" else: text += list[0] return t...
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def construct_index_dict(field_names, index_start=0): """This function will construct a dictionary used to retrieve indexes for cursors. :param - field_names - list of strings (field names) to load as keys into a dictionary :param - index_start - an int indicating the beginning index to start from (default ...
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from typing import BinaryIO import hashlib def get_md5(f: BinaryIO) -> str: """Make an MD5 hash of the page's contents.""" BLOCKSIZE = 65536 hasher = hashlib.md5() buf = f.read(BLOCKSIZE) while len(buf) > 0: hasher.update(buf) buf = f.read(BLOCKSIZE) return hasher.hexdigest()
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