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from typing import Any from contextlib import suppress def safe_get(key, obj, default=None) -> Any: """ Safely retrieve key from object Args: obj: Any. target object key: inner object adders token default: value to return on failure Returns: on success: value of request...
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import json def pretty_json(json_str): """Generates a pretty-print json from any json.""" return json.dumps(json.loads(json_str), indent=4)
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import os def getPyoExamples(fullpath=False): """ Returns a listing of the examples, as a dictionary, installed with pyo. :Args: fullpath: boolean If True, the full path of each file is returned. Otherwise, only the filenames are listed. >>> examples = getPyoExamples...
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def default_parameter_f(x, y=3): """ default_parameter_f """ z = x + y return z
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def _sensor(product_id): """Find sensor ID from product ID.""" sid = product_id[:2] if sid == 'LC': return 'OLI_TIRS' elif sid == 'LO': return 'OLI' elif sid == 'LE': return 'ETM' elif sid == 'LT': return 'TM' elif sid == 'LM': return 'MSS'
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def test_ptr_assign(): """A simple pointer dereference assignment.""" return """ fn main() { var x := 1000::*u8; *x = 4; } """
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import math def get_int_percent(float_value): """ floatを整数のパーセント値に変換して返す[0.275 >> 28] :param float_value: float :return: int """ return int(math.ceil(float_value * 100))
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from datetime import datetime def extract_date_sitename(directory_path, sitename_location, datetime_location): """Extract datetime and sitename from directory path names. Parameters ----------- directory_path : string A path to the directory...
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import collections def _initial_gradients(vspace, target, output_gradients, tensor_usage_counts): """Computes the initial gradients for each Tensor.""" # Initialize the backprop stack gradients = collections.defaultdict(list) for i, t in enumerate(target): if vspace.tensor_id(t) in tensor_usage_counts: ...
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def intracluster_links_aux(adj, indices): """Computes intra-cluster links or weights given nodes indices. :param adj: [description] :type adj: [type] :param indices: [description] :type indices: [type] :return: [description] :rtype: [type] """ n_links = 0 for ii in indices: ...
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import requests import yaml def load_yaml_from_url(url): """ Helper method for grabbing yaml files """ response = requests.get(url) if response.status_code != 200: raise RuntimeError(f'Unable to access Biolink Model at {url}') return yaml.load(response.text, Loader=yaml.FullLoader)
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def triple_length(m: int, n: int) -> int: """Returns the length of the triangle formed by the Pythagorean triple (m^2 - n^2, 2mn, m^2 + n^2).""" return 2 * m * (m + n)
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import itertools import random def random_tuple_list(lst1, lst2, lb=1): """ Generate a random list of tuples (x,y) where x is in lst1 and y is in lst2; """ product = list(itertools.product(lst1, lst2)) if len(product) == 0: k = 0 else: k = random.randint(lb, len(product)) ...
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def compress_string(string) -> str: """ big O: linear time linear space """ # validate the string if isinstance(string, str) is False: raise ValueError(f"Error while validating input. {string} is not of type str.") # compress the string output = string if len(string) > 0:...
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def extract_container_id_removal(line): """ Extract container id from a Removing line Removing intermediate container 816abeca3961 """ parts = line.strip().split(' ') if len(parts) == 4: return parts[3] else: raise Exception("Unrecognized docker removing line: " + l...
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import sys def make_hypothesis(val: int): """Create a hypothesis that checks if `val` is in actions.""" def hypothesis(env): print("hypothesis?()", env.actions, val in env.actions, file=sys.stderr) return val in env.actions return hypothesis
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def get_recommendation(risk_level): """ Returns a investment recommendation based on the choice of risk level """ recommendation = "" if risk_level == 'None' or risk_level == 'none': recommendation = "Investment recommendation: 100% bonds (AGG), 0% equities (SPY)" elif ris...
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def digit_that_breaks_ordering_index(digits: list) -> int: """ Starting from last digit of given number, find the first digit which breaks the sorted ordering. Let the index of this found digit be 'i' and the digit be number[i]. :param digits: list of digits :return: the index of the first digi...
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def filter_insertchars(s,chars=None,space=' '): """insertchars(s,chars=None,space=' ') -> str Insert space before each occurence of a character in chars.""" xchars = str(chars) out = '' for x in s: if x in xchars: out += space out += x return out
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def specindex(nu1, nu2, f1, alpha): """ Calculate some flux given two wavelengths, one flux, and the spectral index. """ return f1*(nu2/nu1)**(alpha)
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import requests def get_name(qids, queryProperty): """ Get labels of list of qnodes (max 50) """ url = "https://www.wikidata.org/w/api.php" params = { "action":"wbgetentities", "format":"json", "props":queryProperty, "languages":"en", "limit":"max", } ...
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import os def _oneLevelAbove_oneSubDirSatisfies(dir_path, judgeFunction): #--- low level function """ Returns True if "judgeFunction" return True on one of the subdirectories of "dir_path". """ for name in os.listdir(dir_path): full_path = os.path.join(dir_path, name) if os...
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def get_yaml_config(unusued_file_name): # pylint: disable-msg=unused-argument """Return an empty dict. This is only implemented to make sure that analyzers attempting to call this function still work. Args: unused_file_name: String that defines the config file name. Returns: An e...
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def _translate(text, table): """ Converts a continuous string to codes specified in a table """ ptr = 0 encoded = "" # Stop when we're past the strig while ptr < len(text): # end is how many bits ahead we look end = 1 # Keep looking ahead while no match in reverse dict ...
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import os def _order_fpaths(soundfpaths): """ Order the sound files according to their phase and articulation group. So, Phase0 comes first, then Phase1_0, then Phase1_1, etc. If there are any left over, they are appended at the end. """ ordered = [] soundfpaths = list(soundfpaths) # We w...
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def f_factory(W): """ For given network parameters, returns the function f, where f(V)[:,p] is the instantaneous change in network state V[:,p] """ return lambda V: (W.dot(V))*(1 - V**2)
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def find_sols(f, arr, sign_check_func = lambda x, y: x*y < 0, verbose = False): """ Given an array of section points, checks if function *f* has a solution in any of the intervals formed by said points. """ sols = [] for i in range(len(arr)-1): if sign_check_func(f(arr[i]), f(arr[i+1])):...
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def motifs_from_proto(motifs, is_one_dimensional=False): """ Utility function to transform motif locations back to single dimension or multi-dimension location. Parameter --------- motifs : array_like The protobuf formatted array. is_one_dimensional : boolean A flag to indic...
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import os def manage_py_dir(): """Returns the directory holding the manage.py file as a string.""" return os.path.normpath(os.path.dirname(os.path.realpath(__file__)) + os.sep + os.pardir +\ os.sep + os.pardir + os.sep) + os.sep
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def knapsack(max_weight, items): """ 0 1 2 3 ... w 0 no item 1 item 1 2 item 2 ... n item n """ n = len(items) + 1 m = max_weight + 1 dp = [[0] * m for _ in range(n)] for i_index in range(1, n): current_item = items[i_index...
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def replacePlaceholder(sentence,placeholder,subsitute): """ This function replaces in a sentence a placeholder with a specified substitute Input: sentence: string representing a sentence placeholder: string representing a placeholder that occurs in the supplied sentence subsitute: s...
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def list_as_comma_string(bits, serial_comma=False): """ >>> list_as_comma_string([]) '' >>> list_as_comma_string(['hi']) 'hi' >>> list_as_comma_string(['hi', 'there']) 'hi and there' >>> list_as_comma_string(['hi', 'there', 'world'], serial_comma=False) 'hi, there and world' ...
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def auto_label(callable_or_expr): """ Given a callable or a string, extract a name for labeling axes. Parameters ---------- callable_or_expr : String | Callable Returns ------- label : String """ if callable(callable_or_expr): return getattr(callable_or_expr, "__name__"...
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from typing import Counter def lex_smallest_string(s): """ :type s: str :rtype: str """ char_counter = Counter(s) # "".join(item[0] for item in Counter.items() for x in range(item[1])]) smallest_s = "" for item in char_counter.items(): for _ in range(item[1] // 2): ...
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import argparse def parse_args(): """Parse in command line arguments""" parser = argparse.ArgumentParser(description='Test a Fast R-CNN network') parser.add_argument( '--dataset', help='training dataset') parser.add_argument( '--cfg', dest='cfg_file', required=True, hel...
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def floor_diff(floor1, floor2): """ :param floor1: represents a floor in the building :param floor2: represents a floor in the building :return: the distance between both floors """ return abs(int(floor1) - int(floor2))
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import re def replace_factors(product_string, name, value): """Takes a `product_string` and replaces all factors with `name` by `value`. Arguments: - `product_string`: input string containing a product - `name`: name of the factor - `value`: value of the factor """ value = str(value) ...
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def to_readable(o, fields, translated): """ Convert object properties to nice title readable """ res = {} if o: for f in fields: if o.get(f): if translated.get(f): res[translated.get(f)] = o.get(f) else: res[...
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def get_chord_notes(chord, a_train=False): """Given a chord root, returns list of valid scale notes encoded in extended-duration between 1 and 21 Args: chord (int): chord root [1,7] a_train (bool, optional): efaults at False. If True, returns valid scale notes for Take the A Train by Duke ...
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def delete_tasks(project, params, items): """ Delete tasks by ids """ project.delete_tasks(items) return {'processed_items': len(items), 'detail': 'Deleted ' + str(len(items)) + ' tasks'}
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def user_to_name(argument): """Switch functionality """ switcher = { "lopezobrador_": "A. López Obrador", "RicardoAnayaC": "R. Anaya Cortés", "luisederbez": "L. Dervez Bautista", "RafaMorenoValle": "R. Moreno Valle", "JCRomeroHicks": "J. Romero Hicks", "eruvie...
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import math import random def get_path(start_position: tuple, end_position: tuple, step: int) -> tuple: """ Составляет маршрут до конечной точки, формируя кривую линию. :param start_position: начальная позиция. :param end_position: конечная позиция. :param step: длина шага. :return: следующую ...
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import shutil def dir_remove(rm_dir): """ Recursively remove all files in the specified directory """ try: shutil.rmtree(rm_dir) return True except: return False
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import numpy def _normalise_image(images): """ normalise image to 0.0 to 1.0 :param images: :return: """ # Convert from [0, 255] -> [0.0, 1.0]. images = images - 128 images = numpy.multiply(images, 1.0 / 255.0) return images
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def index_page(): """ """ with open('html/index.html', 'rt') as index_file: index_page=index_file.read() return index_page
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def valid_att_in_label(arch): """A `for` and `string` attribute must be on a `label` node.""" return not arch.xpath('//label[not ((@for) or (@string))]')
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def get_x_indicator_variable_index(i, j, k, l, m, n): """ Map the i,j,k,l indices to the sequential indicator variable index as generated by linear_objective_function_coefficients(). This is basically the (4-dimensional) 'array equation' (as per row-major arrays in C for example). Note that for...
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import re from pathlib import Path def import_public_key(app_path, device_name, keystring): """Import a public key for hyperglass-agent. Arguments: app_path {Path|str} -- hyperglass app path device_name {str} -- Device name keystring {str} -- Public key Raises: RuntimeErr...
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def _toString(cls, typeSpec): """ Make flag from string and fail if any unknown words are encountered. Notes ----- This converts a flag from ``Flags.A|B`` to ``'A B'`` """ return str(typeSpec).split("{}.".format(cls.__name__))[1].replace("|", " ")
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def infix_string(name, infix, delimiter="."): """ :param name: :param infix: :param delimiter: :return: """ tokens = name.split(delimiter) *pre_name, end_name = tokens name = ''.join([delimiter.join(pre_name), infix, delimiter, end_name]) return name
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def get_path(it, selector): """Finds a value deep within a collection of collections, hopefully without throwing any KeyErrors along the way. NOTE: Assumes no lists are involved. Please patch to account for these.""" args = selector.split('.') for arg in args: if not hasattr(it, 'get'): return None it = it....
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def heartbeat(): """return an OK message for simple testing of app deployment""" return "OK"
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import random def make_marker(bits=64): """ Return a unique string that , for marking boundaries in text """ # i.e. '|-b1dda1c7f14cd89e-|' # In python2, hex() on big numbers gives i.e. '0x3333333333L'. # I'll drop the 1st two and last chars with [2:-1]. return '|-'+hex(random.getrandbits(64))[2:-...
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from typing import Callable from typing import Dict from typing import Set def clean_dictionary_of_tmpdir_prefix(remove_tmpdir_path_prefix: Callable) -> Callable: """ Cleans a given dependency graph to make it more human-readable. The output should resemble what a user would see if they ran dgtest in the ...
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import os def which(file): """ find a file in the os PATH """ for path in os.environ["PATH"].split(":"): if os.path.exists(path + "/" + file): return path + "/" + file return None
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import sys import os def check_argv(this_file, resource): """ checks errors """ if len(sys.argv) != 2: print("Usage:", file=sys.stderr) print("$ ./modules/{} resources/{}".format(this_file, resource), file=sys.stderr) sys.exit(1) INPUT_FILE = sys.argv[1] if not os.path....
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def check_if_param_valid(params: dict) -> bool: """ Check if the parameters are valid. """ for i in params: if i == "filter_speech_first": if not type(params["filter_speech_first"]) == bool: raise ValueError("Invalid inputs! filter_speech_first should be either True o...
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import re def html_example(**kwargs): """ 移除html 标签,转换特殊符号""" exclude_word = ['&nbsp;', '&emsp;', '&ensp;'] replace_word = {'&lt;': '< ', '&gt;': '>', '&amp;': '&', '&quot;': '"', '&reg;': '®', '&copy;': '©', '&trade;': '™'} content = kwargs.pop("content") cont = re.sub(r'</?\w+[^>]*>', '', conten...
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def cursor_fetcher(cursor): """ Fetcher that simply returns the cursor. """ return cursor
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def run_app(qt_app, button_window): """Run the QT application.""" button_window.show() retcode = qt_app.exec_() button_window.quit() return retcode
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def fuse_left(A): """ Joins the left bond with the physical index. """ oldshp = A.shape d, chiL, chiR = oldshp A = A.reshape(d*chiL, chiR) return A
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import math import torch def get_mask(input_size, window_size, inner_size, device): """Get the attention mask of PAM-Naive""" # Get the size of all layers all_size = [] all_size.append(input_size) for i in range(len(window_size)): layer_size = math.floor(all_size[i] / window_size[i]) ...
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def course_data(final_workout): """ Return the actual time/power data for the MRC file """ fullmrc = "" fullmrc += "[COURSE DATA]\n" start_time = 0 end_time = 0 for interval in final_workout: fullmrc += "%f %f\n" % (start_time, interval[1]) end_time += interval[0] ...
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from typing import List from typing import Tuple def _apply_SEAR_2(question_postagged: List[Tuple[str, str]]): """ SEAR 2: What NOUN -> Which NOUN """ output = "" applied = False idx = 0 while idx < len(question_postagged): word = question_postagged[idx][0] tag = question_p...
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def str_code_to_id(str_class_code, class_base=2): """ str_class_code: string """ id = 0 codes_length = len(str_class_code) for i in range(codes_length): id = id + int(str_class_code[i]) * (class_base**(codes_length - 1 - i)) return id
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def get_openlibrary_key(key): """convert /books/OL27320736M into OL27320736M""" return key.split("/")[-1]
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import os import logging import configparser def read_config(filename): """ Read config ini file and return configparser object Parameters ---------- filename: str path of ini file to parse Returns ------- configparser.ConfigParser(): configparser object """ config = No...
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import requests def placeimg_com_download(width, height, category): """"placeimg.com downloader generator. You can choose width, height and category and it will return argumentless callable that will donwload such images and return file-like object. """ def wrapped_func(): """Actual call...
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def deemphasize(marker): """Though the knowledge of emphasis is helpful for determining depth, it is _unhelpful_ in other scenarios, where we only care about the plain text. This function removes <E> tags""" return marker.replace('<E T="03">', '').replace('</E>', '')
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def factors(number): """ Find all of the factors of a number and return it as a list. :type number: integer :param number: The number to find the factors for. """ if not (isinstance(number, int)): raise TypeError( "Incorrect number type provided. Only integers are accepted....
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def remove_duplicates(citation): """takes dataset as input and drops all unique traffic stop ids' from the d ataset""" citation.drop_duplicates(subset='seq_id', keep=False, inplace=True) return citation
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def hpo_checkboxes(): """Returns a list of dictionaries representing HPO checkboxes""" checkbox1 = { "_id": "HP:0025190", "hpo_id": "HP:0025190", "description": "Bilateral tonic-clonic seizure with generalized onset", "children": ["HP:0032661"], "ancestors": [], } ...
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def parseTraderGrade(grade): """Converts a decimal trader grade into a text representation (defined by NeonMob) :param float grade: The decimal trader grade to convert :return: The text representation of the given trader grade :rtype: str """ grades = ['F', 'F+', 'D-', 'D', 'D+', 'C-', 'C', 'C+...
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import socket def uds_reachable(uds_path, return_sock=False): """ Check if the unix domain socket at path `uds_path` is reachable. Parameters ---------- uds_path : str return_sock: bool, optional (default is False) Return the socket. Returns ------- bool, socket If th...
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def delete_ListNode(head, delete_node): """ :param head: head of NodeList :param delete_node: node :return: head """ next_node = delete_node.next if next_node: # not del end delete_node.val, next_node.val = next_node.val, delete_node.val delete_node.next = next_node.n...
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def createRankedClusters(PC, clusterlabels): """Create cluster colors from labels.""" clustertypes = set(clusterlabels) PC_ranked = [] c_and_s = [] for klass in clustertypes: PC_k = PC[clusterlabels == klass] PC_ranked.append(PC_k) c_and_s.append((klass, len(PC_k))) PC_r...
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def mid_color(c1, c2): """Returns medium color between c1 and c2""" r = int(0.5 * (c1[0] + c2[0])) g = int(0.5 * (c1[1] + c2[1])) b = int(0.5 * (c1[2] + c2[2])) try: a = int(0.5 * (c1[3] + c2[3])) return (r, g, b, a) except IndexError: return (r, g, b)
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def b_to_s(value): """[binary to string]""" try: return value.decode() except: return value
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from pathlib import Path def validate_path(file_name): """ Validates if the passed-in argument is a valid path Parameters ---------- file_name: str Path to be validated Returns ------- tuple Boolean status and dict to identify if the path is a file or directory ""...
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def _get_operator(spec, context): """ Gets operator from context """ try: return context[spec] except KeyError: print( f"Error: Operator ${spec} is not defined. Make sure you are importing it in the modules section." ) raise
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import time import sys import os def printC(s='',fontColor='red',backgroundColor='white',displayWay=0,LogPath=''): """ 默认字体为红色。背景色为白色 能够按照颜色在控制台打印出来。可以自定义背景色和字体颜色。下划线等 :param s:打印的内容 :param str fontColor: red | green | yellow | pink | blue| gray | black :param backgroundColor: (str) red | g...
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def ese(pred, target): """ takes in predicted values and actual values, returns elementwise squared error via (x-y)^2 """ errs = (pred - target)**2 return errs
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import os def get_qafile(date, exp_id): """Get the Nightwatch QA file for a given date and exposure ID. Parameters ---------- date : str Observation date [YYYYMMDD] exp_id : int Exposure ID Returns ------- filename : str Path to Nightwatch qa-*.fits file. ...
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def obtenir_points(ligne,colonne, joueur): """ renvoie les points gagnées sur le mur du joueur en plaçant une tuile dans son mur dans la ligne et la colonne précisée """ points = 1 taille_mur = len(joueur["mur"][ligne]) if colonne < taille_mur-1: for i in range(colonne+1,taille_mur):...
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def suffix(): """Provides a dummy option to use as a suffix for tests.""" return '-ltr'
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def empty_freq_dict(): """mapping of English letters to their frequency in a text initialized to 0""" return { "A": 0, "B": 0, "C": 0, "D": 0, "E": 0, "F": 0, "G": 0, "H": 0, "I": 0, "J": 0, "K": 0, "L": 0, "...
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import os def is_running_in_databricks(): """ Check if the currently running Python Process is running in Databricks or not If any Enviroment Variable name contains 'DATABRICKS' this will return True, otherwise False""" for k in os.environ.keys() : if 'DATABRICKS' in k : return True ...
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import os def if_fs_client_ok(fs_client: str) -> bool: """If file-system executable file ok for using with command line. Args: fs_client: Ref to `py_dict_rdd2disk`. """ client_path: str = os.popen("which %s" % fs_client).read().strip("\n") return len(client_path) > 2
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import time import socket def recvTimeOut(open_socket, timeOut=2): """ Description Receive a message of unknown length on socket. While receiving a message, if no more characters are sent on socket after timeOut seconds, it is assumed that the message has ended. Therefore, it will always, whatever the lenght ...
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def cli(ctx, feature_id, attribute_key, attribute_value, organism="", sequence=""): """Delete an attribute from a feature Output: A standard apollo feature dictionary ({"features": [{...}]}) """ return ctx.gi.annotations.delete_attribute(feature_id, attribute_key, attribute_value, organism=organism, s...
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def read_list(path): """ Reads a list containing one file per line. Returns an index of line number - line content """ with open(path, 'r') as fhandle: fdata = {} for nline, line in enumerate(fhandle): if not line.strip(): continue # Remove ex...
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def prepend_experiment( CONFIG_PARAMS, datadict, num_experiments, camnames, cameras, dannce_prediction=False, ): """ Adds necessary experiment labels to data structures. E.g. experiment 0 CameraE's "camname" Becomes 0_CameraE. """ cameras_ = {} datadict_ = {} new_...
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import re def version_cmp(v1, v2): """ Compare two version strings and returns: * `-1`: if `v1` is less than `v2` * `0`: if `v1` is equal to `v2` * `1`: if `v1` is greater than `v2` Raises `ValueError` if versions are not well formated. """ vregex = r"(?P<whole>\d+(\.(\d+))*)" v1...
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from typing import Sequence def string_list_to_html(string_list: Sequence[str]) -> str: """ Converts a string list to an HTML bullet list. """ if not string_list: return "<p>None</p>" item_list = [f"<li><code>{item}</code></li>" for item in string_list] return "<ul>" + "".join(item_lis...
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def package_installed(module, package): """ Determine if the package is already installed """ rc, _, _ = module.run_command(['pacman', '-Q', package], check_rc=False) return rc == 0
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def wrap(node, tag): """Wrap the given tag around a node.""" wrap_node = node.ownerDocument.createElement(tag) parent = node.parentNode if parent: parent.replaceChild(wrap_node, node) wrap_node.appendChild(node) return wrap_node
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def square(x): """ Return x squared. >>> square(3) 9 Extra tests: >>> square(1) 1 >>> square(0) 0 >>> square(-4) 16 """ return x * x
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import re def part1(parser): """ count the number of imputs that complete match rule zero """ rule_count = 0 for line in parser.inputs: match = re.match("^"+parser.rules['0']+"$", line) if match: rule_count+=1 return rule_count
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import re def read_avg_strength(infile): """Read residue interaction strength from PSN avg files :param infile: File handle pointing to WORDOM avgpsn output file """ m_start = re.compile("^\*\*\* Averaged Interaction Strength \*\*\*") m_end = re.compile("^===") m_entry = re.compile("^\s*.:.\d...
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import os import subprocess def extract_video_frames(video_path, frames_dir, n, mode='fps', pad=0, verbose=False): """Extracts video frames using ffmpeg. Parameters ---------- video_path : str Video path. frames_dir : str Frames output dir, created if does not exist. n: int ...
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