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def uptime(): """ Returns computer uptime in seconds """ return float(open('/proc/uptime').read().split()[0])
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import imp def create_module(problem_data): """Creates a new module for storing compiled code. Parameters ---------- problem_data - dict Problem data dictionary Returns ------- New module for holding compiled code """ problem_name = problem_data['problem_name'] module...
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import torch def transform_homogeneous(matrices, vertices): """Applies batched 4x4 homogenous matrix transformations to 3-D vertices. The vertices are input and output as as row-major, but are interpreted as column vectors multiplied on the right-hand side of the matrices. More explicitly, this funct...
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def no_cleanup(value, args): """Default cleanup function, returns the unchanged value.""" return value
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def last_number_divisible_by_50(currentNum): """Calibre fails to create TOC entries beyond 50 chapters, so we limit each epub to be at most 50 chapters""" currentNum -= 1 while currentNum % 50 is not 0: currentNum -= 1 return currentNum
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from pathlib import Path import yaml def loadConfigDict(configNames: tuple): # pathLib syntax for windows, max, linux compatibility, see https://realpython.com/python-pathlib/ for an intro """ Generic function to load and open yaml config files :param configNames: Tuple containing names of config fil...
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from datetime import datetime def get_time(): """ :return current time: """ return datetime.now().strftime("%H:%M:%S").__str__()
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import os def find_file(base_directory: str, filename: str): """Return the full path of the given ``filename`` in the ``base_directories`` or any of its subdirectories (recursively; file must match exactly).""" for root, dirs, files in os.walk(base_directory): if filename in files: return...
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def py2pyx(pylines): """Generate pyrex code lines from python code lines - Adds import of cython and numpy - searches every line for "#c". If found text before "#c" is replaced with text after "#c", e.g: "def func(a): #cpdef func(int a):" -> "cpdef func(int a): "#cdef int b" -> "cdef int b" """ ...
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import math def basic_dist(set1, set2): """ """ return math.sqrt( sum((e1 - e2)**2 \ for e1, e2 in zip(set1, set2)))
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def is_comment(string): """ Find out if line is a comment or line of code :param string: line to analyze :return: True if line is a comment """ chars = list(string) if len(chars) <= 0: return True if chars[0] == "#": return True else: return False
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import zipfile def un_zip(zip_file, uzip_folder=None): """Uncompression .zip file Args: zip_files: str, zip_file should be file path; uzip_folder: str, uncompression files name. Return: uzip_folder: str, uncompression files name. """ assert zip_file[-4:]==".zip", '`zip...
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def extract_brackets(line): """Splits a scroll 'call line' into identifier + suffix.""" ident, _, enil = line[1:].partition("(") thing, _, _, = enil.rpartition(")") return ident, thing
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import requests import logging import os def network_per_exists_check(api_url, device_addr, peripheral_dir): """ Checks if peripheral already exists """ identifier = device_addr try: r = requests.get(f'{api_url}/{identifier}') if r.status_code == 404: return False ...
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def assert_real(real, dim=3): """ :param real: supposed shape [B, C, m, m, 6] :return: B, C, m """ [B, C, m, _, d] = real.shape assert real.shape[3] == m assert d == dim return B, C, m
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def input_output01(input): """ Expects a list of lists as input, outputs each sublist in a line comma delimited. """ return '\n'.join(','.join(map(str,sl)) for sl in input)
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def i_am_the_spooler() -> bool: """Returns flag indicating whether you are the Spooler.""" return False
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import os def analytics(self, args): """ Print analytics of program No args :Example: reversing\@icsref:$ analytics """ try: prg = self.prg except AttributeError: print('Error: You need to first load or analyze a program') return 0 path = os.pat...
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def search_without_dead_links(search_factory): """ Here we pass filter_dead = True. """ def _search_without_dead_links(**kwargs): return search_factory(filter_dead=True, **kwargs) return _search_without_dead_links
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def V_phrase_num(tr): """returns the number attribute of a verb-like tree, based on its head verb, or '' if this is undetermined.""" if (tr.label() == 'T' or tr.label() == 'I'): return tr[0][1] # the s or p from Is,Ts or Ip,Tp elif (tr.label() == 'VP'): return V_phrase_num(tr[0]) ...
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def _str_to_bytes(value: str) -> bytes: """Convert ``str`` to bytes""" return value.encode("utf-8")
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import sys def get_python_version(): """ Get the python version string for the current version of python that is running. Returns: version (str): The major.minor version string """ info = sys.version_info return '{major}.{minor}'.format( major=info.major, minor=in...
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import torch def ordinal_accuracy(logits, levels, device='cpu', tolerance=0, reduction='mean'): """Computes the accuracy with a tolerance for ordinal error. Parameters ---------- logits : torch.tensor, shape(num_examples, num_classes-1) Outputs of the CONDOR layer. levels : torch.tensor,...
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def render_all(jinja_env, stig_ids, all_rules): """Generate documentation RST for each STIG configuration.""" template = jinja_env.get_template('template_all.j2') return template.render( stig_ids=stig_ids, all_rules=all_rules, )
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import numpy def isprime1(n): """ This is the description of the function 2 ~ Loves it +1 Parameters ---------- n : int int to check if prime Returns ------- bool true if n prime """ if n>=2: for i in range(2, int(numpy.ceil(numpy.sqrt(n)))):...
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def curry_clockwise_compare(center): """ Returns the clockwise comparison function for sorting elements in clockwise order given a center point It returns a function used for comparison in sort, in this implementation, the comparison function is curried with the center of the circle you are comparing t...
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def dataset1Ddata(alldata): """ Parse a dataset into the x and y scan values Returns: x (array) y (array) """ y = alldata.default_parameter_array() x = y.set_arrays[0] return x, y
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def rho_top_liq(x_aver_top_mass, rho_lc_x_aver_top, rho_hc_x_aver_top): """ Calculates the destiny of liquid at top of column. Parameters ---------- x_aver_top_mass : float The average mass concentration at top of column, [kg/kg] rho_lc_x_aver_top : float The destiny of low-boill...
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import torch def cross_matrix(k): """Application of hodge star on R3, mapping Λ^1 R3 -> Λ^2 R3""" K = torch.zeros(*k.shape[:-1],3,3,device=k.device,dtype=k.dtype) K[...,0,1] = -k[...,2] K[...,0,2] = k[...,1] K[...,1,0] = k[...,2] K[...,1,2] = -k[...,0] K[...,2,0] = -k[...,1] K[...,2,1]...
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def euclidian_distance(ptA, ptB): """ Returns the shortest path distance between the two Points """ if (ptA.X != ptB.X or ptA.Y != ptB.Y): return ( (ptA.X - ptB.X)**2 + (ptA.Y - ptB.Y)**2 ) ** (1/2) return 0.0
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def make_binder_pair( h1, h2 ): """Returns a binder pair from the two hits A pair has the form: ( binder1, binder2, orientation1, orientation2 ) Where the binders are pssm names typically and the orientation describes the strand the pssm binds to (true for positive strand). """ b1...
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def rotate_order2_tensor(rotation, tensor): """Transform a tensor with a similarity transformation.""" return rotation @ tensor @ rotation.T
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from typing import Union from typing import List def get_corresponding( value_or_matrix: Union[int, List[List[int]]], row: int, col: int ) -> int: """If `value_or_matrix` is a matrix, extract the value in cell specified by `row` and `col`. If `value_or_matrix` is a scalar, just return it. """ if i...
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import torch def convert_frequencies_to_mels(f: torch.Tensor) -> torch.Tensor: """ Convert f hertz to m mels https://en.wikipedia.org/wiki/Mel_scale#Formula """ return 2595.0 * torch.log10(1.0 + f / 700.0)
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def get_key(key, config, msg=None, delete=False): """Returns a value given a dictionary key, throwing if not available.""" if isinstance(key, list): if len(key) <= 1: if msg is not None: raise AssertionError(msg) else: raise AssertionError("must pr...
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import os def file_exists(file): """Check if a file exists. Parameters ---------- file : str The file name to check. Returns ------- bool True if the file exists, False if it does not. """ return os.path.isfile(file)
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def plot_bounds(observed_min, observed_max): """Compute the plot bounds for observed data Args: observed_min (number) -- Lowest number found in data observed_max (number) -- Highest number found in data Returns: (number, number) A minimum and maximum x value for the plot """ if obs...
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import torch def convert_data(data): """ Args: data: The research data Returns: features: The features labels: The data labels """ features = torch.tensor(data.features) labels = torch.tensor(data.labels) return features, labels
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def has_won_recursive(board): """Validate NxN board recursively.""" def find(row, col, move, count, x_or_o): def valid_sq(): if -1 < row < len(board) and \ -1 < col < len(board) and \ -1 < count <= len(board)and \ x_or_o == board[row][col]: return True return ...
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def get_data_cfgstr(ibs, daid_list): """ part 2 data hash id """ daids_hashid = ibs.get_annot_hashid_visual_uuid(daid_list) return daids_hashid
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from typing import Any from typing import Tuple import os def config_dirs(tmpdir: Any) -> Tuple[str, str, str]: """Generate XDG dirs and vars.""" config_dir = str(tmpdir.mkdir("config")) cache_dir = str(tmpdir.mkdir("cache")) data_dir = str(tmpdir.mkdir("data")) os.environ["XDG_CONFIG_HOME"] = co...
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def strip_line_nums(line): """ Strip line numbers from the start of a line. """ # Find the end of a number at the start of the line, if there is one. pos = 0 line = line.strip() for c in line: if (not c.isdigit()): # Don't delete numeric labels. if (c == ':')...
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def total_count(expression): """ Compute total count library size. :param expression: Expression count matrix with genes as rows and samples as columns :return: integer total count library size per sample """ return expression.sum(axis=0)
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def positive(): """ Validate that the given number is positive. Note that zero is neither positive or negative. >>> f = positive() >>> f(0) False >>> f(5) True >>> f(-5) False >>> f(45.5) True :rtype: A validator function. """ def validator(num): ret...
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def send_text_message(func): """发送文本信息""" def inner(update, context): text = func(update, context) context.bot.send_message( chat_id=update.message.chat_id, text=text) return inner
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def get_error_from_utilization(utilization, setpoint, current_instances): """ Consider scaling up if utilization is above the setpoint Consider scaling down if the utilization is below the setpoint AND scaling down wouldn't bring it above the setpoint Otherwise don't scale """ max_threshold = se...
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def filename_dist(dist): """ Return the filename of a distribution. """ if hasattr(dist, 'to_filename'): return dist.to_filename() else: return dist
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def chain_len2(chainify, authority_a, valid_authority, certificate_2): """Client certificate chain with length of 2""" return chainify(certificate_2, authority_a, valid_authority)
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def calcul_max(l: list) -> int: """ returns the sum of the 2 highest elements of l """ _l = list(l) max1 = max(_l) _l.remove(max1) max2 = max(_l) return max1 + max2
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def _s2_st_to_uv(component: float) -> float: """ Convert S2 ST to UV. This is done using the quadratic projection that is used by default for S2. The C++ and Java S2 libraries use a different definition of the ST cell-space, but the end result in IJ is the same. The below uses the C++ ST definition...
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import sys def SingleComplement(inputBase): """ Returns the complementary base of a single input base. """ if inputBase == 'A': return 'T' elif inputBase == 'T': return 'A' elif inputBase == 'G': return 'C' elif inputBase == 'C': return 'G' # Denotes a...
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def split_class_def(iter_): """Splits into class or def lines.""" iter_ = iter_.strip() if iter_.startswith("def"): iter_ = iter_[3:] # elif iter_.startswith("class"): # x = iter_[6:-2] return iter_
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def _combine_tags(tags): """ Since url addresses do not respect case, we convert all tags to lowercase, and combine tags with the same chars. For example, Kids: [1, 2] and kids: [3, 4] becomes kids: [1, 2, 3, 4]. """ clean_tags = {} for tag, images in tags.items(): tag = tag.lowe...
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def delegate(connection, identity_token, whitelist=None): """Returns authentication token and cookies from given X-MSTR- IdentityToken. Args: connection: MicroStrategy REST API connection object identity_token: Identity token whitelist: list of errors for which we skip printing erro...
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def confirm_name(message, name, force=False): """Ask the user to confirm the name. Parameters ---------- message: str The message to be printed. name: str The string that the user must enter. force: bool Override confirmation and return True. Default: False. Returns...
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def entangle_system(s, id, id2): """Entangle specified qubits of a system.""" aux = s.apply_gate("H", targets=id) res = aux.apply_gate("X", targets=id2, controls=id) aux.free() return res
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def parse_encode_biosample(data): """Parse a python dictionary containing ENCODE's biosample metadata into a dictionary with select biosample metadata :param data: python dictionary containing ENCODE' biosample metadata :type s: dict :return: dictionary with parsed ENCODE's biosample meta...
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import json import hashlib def hash_dict(nested_dict): """ Returns hash of nested dict, given that all keys are strings """ dict_string = json.dumps(nested_dict, sort_keys=True) md5_hash = hashlib.md5(dict_string.encode()).hexdigest() return md5_hash
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import numpy def parse_header(hdr, zero_offset): """ Parse a WCS header to arguments of pix2ang and ang2pix. Parameters ---------- hdr : dict WCS header zero_offset : boolean If zero_offset is True, the routine assumes 0-indexed pixel coordinates (useful in Pyt...
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from typing import Union def milimeter_mercury_to_bars(mm_hg: float, unit: str) -> Union[float, str]: """ This function converts mmHg to bar Wikipedia reference: https://en.wikipedia.org/wiki/Bar_(unit) Wikipedia reference: https://en.wikipedia.org/wiki/Millimetre_of_mercury >>> milimeter_mercury...
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def config_section_data(): """Produce the default configuration section for app.config, when called by `resilient-circuits config [-c|-u]` """ config_data = u"""[fn_secureworks_ctp] # Required - base URL for the Secureworks API. # Do not place '/' at the end of the url strings. base_url=https://api...
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def print_exptree(root): """ Print out an expression tree object via recursion. Args: root: expression tree (object type) """ # Empty tree if root is None: return 0 # Leaf node if root.left is None and root.right is None: return print(f'-- leaf: {root.data}'...
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from typing import Callable from typing import List from typing import Match import random def get_shuffler() -> Callable: """ This function returns a 'ranker' function. It is meant to be used by matchmaker, e.g. `get_next_match(..., get_ranker(...))`, and it is only this complex so we can capture the...
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import collections def merge(*ds): """Merge dictionaries; last one wins.""" r = collections.OrderedDict() for d in ds: r.update(d) return r
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def check_shapes(mat1, mat2): """Check if the two matrices has the same shape if not return None""" shape = [] while (isinstance(mat1, list) and isinstance(mat2, list)): lenMat1 = len(mat1) lenMat2 = len(mat2) if lenMat1 != lenMat2: return None shape.append(le...
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import click def valid_band(ctx, param, value): """ Check image band validity (band >= 1)""" try: band = int(value) assert band >= 1 except: raise click.BadParameter('Band must be integer above 1') return band
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import socket def get_node_ip_address(address="8.8.8.8:53"): """Determine the IP address of the local node. Args: address (str): The IP address and port of any known live service on the network you care about. Returns: The IP address of the current node. """ ip_address, port = address.split(...
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import json def gluonts_get_cardinality(dataset_path="", TD=None): """ Cardinality of gluonts dataset :param dataset_path: :param TD: :return: """ if TD is None : cc = json.load(open( dataset_path + "/metadata.json", mode="r" ) )['cardinality'] else : cc = [feat_static_cat.cardinality for...
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from typing import Dict import os import hashlib def hash_dict(exp_dict: Dict) -> str: """Hash an experiment dictionary into a unique id. Can be used as a file-name. Adapted from Haven AI (https://github.com/haven-ai/haven-ai). :param exp_dict: An experiment dictionary. :returns: A unique id for the e...
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from typing import Sequence from typing import List def indexify(sequence: Sequence, index_source: Sequence) -> List: """For the given `sequence`, get the index of each item in the `index_source`""" return [index_source.index(item) for item in sequence]
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def _decayed_value_in_linear(x, max_value, padding_center, decay_rate): """ decay from max value to min value with static linear decay rate. """ x_value = max_value - abs(padding_center - x) * decay_rate if x_value < 0: x_value = 1 return x_value
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import requests import json def get_future_weather_info(): """ Function to retrieve prediction data for Dublin Weather in JSON format. """ response = requests.get('http://api.openweathermap.org/data/2.5/forecast?q=Dublin,ie&APPID=70ef396e3ce3949e0934b4428e41f453') if response.status_code == 2...
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import json def read_json_file(path: str): """Read a json file into a dict.""" with open(path, 'r') as f: data = json.load(f) return data
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import string import random def generate_session_id(size=32, chars=string.ascii_letters+string.digits): """ Generate session id - 32 length string with ascii letters and digits """ return ''.join(random.choices(chars, k=size))
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def clean_data(df): """ This is the function that cleans the data of the joined df Input df - the df as we read it Output Returns a cleaned df """ #Split categories into separate columns categories = df['categories'].str.split(pat=';',expand=True) #Rename the ...
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def get_chars(path_to_vocab): """ Return the list of all characters found in the vocabulary. """ chars = set() with open(path_to_vocab) as f: for line in f: chars.update(line.rstrip()) return chars
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import re def at_least_one_equal_pair(num: str) -> bool: """Check if at least one unique pair is present.""" return any(len(group[0]) == 2 for group in re.findall(r"((.)\2+)", num))
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def fill_nan(df,list): """ Fill nan values with either mean or mode Parameters ---------- df : dataframe dataframe used for checking and filling nan values list: list list of columns to be checked Returns ------- df : dataframe modified dataframe with no nan...
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def _from_snapshot_request(pre_image, image): """ when patch location, check if it's snapshot-sync case. """ if pre_image.status == 'queued' and len(image.locations) == 1: loc_meta = image.locations[0]['metadata'] return loc_meta and loc_meta.get('image_from', None) in ['snapshot', ...
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def cidade_pais(cidade: str, pais: str) -> str: """ -> Devolve o nome da cidade e do seu país formatados de forma elegante. :param cidade: O nome da cidade. :param pais: O nome do país. :return: Retorna a string -> 'Cidade, País' """ return f'{cidade}, {pais}'.title()
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import re def is_uuid(value): """Verify if the value can be a uuid""" UUID_REGEX = re.compile(r'^[a-f\d]{8}-[a-f\d]{4}-[a-f\d]{4}-[a-f\d]{4}-[a-f\d]{12}$', re.IGNORECASE) m = UUID_REGEX.match(value) return m is not None
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import os def tordir_file(fname): """Make fname relative to the current directory, which should be the top-level tor directory. Also performs basic path simplifications.""" return os.path.normpath(os.path.relpath(fname))
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def create_envs(service_component_name, *envs): """Merge all environment variables maps Creates a complete environment variables map that is to be used for creating the container. Args: ----- envs: Arbitrary list of dicts where each dict is of the structure: { <environment...
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def create_structure(hash): """ Recursive method that creates a JSON-like structure from a hash. Refer to Starflyers.py for the input Parameters hash. A hash expression Returns base_structure. The structure of the given hash. Dictionary. """ index = 0 character = hash[ind...
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def recurrence_abc(n, alpha, beta): """See A&S online - https://dlmf.nist.gov/18.9 . Pn = (an-1 x + bn-1) Pn-1 - cn-1 * Pn-2 This function makes a, b, c for the given n, i.e. to get a(n-1), do recurrence_abc(n-1) """ aplusb = alpha+beta if n == 0 and (aplusb == 0 or aplusb == -1): ...
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import math def hit_info(mirror_corner_pos, hit_pos): """Get hit infomation, which mirror to hit?""" is_left = False is_top = False if (math.fabs(hit_pos[0] - mirror_corner_pos[0]) < 0.001): # left hit is_left = True if (math.fabs(hit_pos[1] - mirror_corner_pos[1]) < 0.001): ...
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import time def formated_time(): """Helper function to reformat time to the specific format from below.""" ct = time.localtime() return "{0:04d}-{1:02d}-{2:02d}T{3:02d}:{4:02d}:{5:02d}Z".format(*ct)
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def to_int(object): """RETURN : None if unable to convert to int""" return int(object)
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def get_underline(string): """ Return an underline string of the same length as `str`. """ return "="*len(string) + "\n"
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import argparse def parse_args(args): """ Parses arguments. :param args: Arguments. :return: Parsed arguments. """ parser = argparse.ArgumentParser('Tello Flight Commander', epilog='One-Off Coder https://www.oneoffcoder.com') parser.add_argument('-f', '--file', help='command file...
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def width_multiplier_op(filters: int, width_multiplier: float, min_depth: int = 8) -> int: """Determine the number of channels given width multiplier""" return max(int(filters * width_multiplier), min_depth)
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def get_status(runs): """Get the most recent status of workflow for the current PR. Parameters ---------- runs : list List of comment objects sorted by the time of creation in decreasing order. Returns ------- status : string The most recent status of workflow. Can ...
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from typing import Tuple from typing import Dict def parse_options_header(value: str) -> Tuple[str, Dict[str, str]]: """Like werkzeug.http.parse_options_header(), but ignores the options.""" return value.partition(';')[0].strip(), {}
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def backdoor_examples(xs, backdoor, eps): """ Inject a backdoor into training examples with norm epsilon. """ return xs + backdoor * eps
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def fix_standard_imports(red): """ Handles import modification in the form: import flask.ext.foo" --> import flask_foo """ imports = red.find_all("ImportNode") for x, node in enumerate(imports): try: if (node.value[0].value[0].value == 'flask' and node.value[0]...
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def html(module, tag): """Mapping for html tags. Maps tags to title case, so you can type html tags as ``<audio>`` or ``<AuDiO>`` or whichever way. """ title = tag.title() if title in { "A", "Abbr", "Acronym", "Address", "Area", "Article", ...
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from pathlib import Path import re def normalise_nci_symlinks(input_path: Path) -> Path: """ If it's an NCI lustre path, always use the symlink (`/g/data`) rather than specific drives (eg. `/g/data2`). >>> normalise_nci_symlinks(Path('/g/data2/v10/some/dataset.tar')).as_posix() '/g/data/v10/some/data...
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def get_user_input(case: str) -> str: """Get user input on what to do if the the dataframes are of same width, but the column names differ. """ if case == "columns": INPUT_STRING = ( "\nThe dataframes have the same number of columns, but their " "names differ. \nIf you wa...
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def calc_mean(values): """Calculates the mean of a list of numbers.""" values_sum = 0 for value in values: values_sum += value return values_sum / len(values)
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def destroy_item(game, *args): """Removes an Item from the game by setting its location is set to None.""" (item, action_description) = args[0] if game.is_in_inventory(item): game.inventory.pop(item.name) print(action_description) elif item.name in game.curr_locat...
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