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import uuid def random_string(string_length=10): """ :param string_length: :return: """ random = str(uuid.uuid4()) random = random.replace("-","") return random[0:string_length]
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import time def utcut2dow(ut): """UTC UT -> day-of-week: 0..6 (Mon..Sun).""" return time.gmtime(ut).tm_wday
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import torch def create_random_input(batch_size, n_features, gate, n_parameters, seed=0, x_func=torch.randn, par_func=torch.randn): """Create input, parameters and gates. Parameters ---------- gate : bool If False, the returned gate will be None. """ # Make su...
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import torch def _safe_det_3x3(t: torch.Tensor): """ Fast determinant calculation for a batch of 3x3 matrices. Note, result of this function might not be the same as `torch.det()`. The differences might be in the last significant digit. Args: t: Tensor of shape (N, 3, 3). Returns: ...
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import cProfile def run_with_profile(func, *args, **kwargs): """Show reuslts and time profile using cProfile.""" prof = cProfile.Profile() res = prof.runcall(func, *args, **kwargs) prof.print_stats() return res
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def _relax_additional_properties(obj): """relax any `additionalProperties`""" if isinstance(obj, dict): for key, value in obj.items(): if key == 'additionalProperties': value = True else: value = _relax_additional_properties(value) obj[...
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import types from typing import Sequence from typing import Tuple def get_public_symbols( root_module: types.ModuleType) -> Sequence[Tuple[str, types.FunctionType]]: """Returns `(symbol_name, symbol)` for all symbols of `root_module`.""" fns = [] for name in getattr(root_module, "__all__"): o = getattr(...
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def bud_cons(c1, r, e1, e2): """ Defines the budget constraint e = e1 + e2/(1+r) is total endowment """ e = e1 + e2/(1+r) return e*(1+r) - c1*(1+r)
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def initialize_data_dict(): """Initialize a Python dictionary containing the data for the UI""" data_dict = {} data_dict["HEADER"] = ["Performance indicator", "", ["Peak years", "Mid years", "Tail years", "Total"]] data_dict["H2_utilized"] = ["H<sub>2</sub>&nbsp;consumption (ton)", "Accumulated hydrogen...
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def fibonacci_memoization(n): """Memoization implementation of fibonacci. O(n) runtime, O(n) max stack frames, O(n) pre-allocated space""" d = [0] * (n + 1) d[1] = 1 d[2] = 1 def fibonacci_memoization_helper(k): if d[k] == 0: d[k] = fibonacci_memoization_helper(k - 1) + fibonacc...
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def analyse_sample_attributes(sample): """ To find sample attributes Attributes: min_position_value - [index, value] max_position_value - [index, value] up_or_down - up - down - variates """ attributes = { "min_position_value": [...
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def get_account_emails(es_client, active_since=None, index="cas-credit-accounts"): """Returns account ids (active since a given date)""" query = {"index": index, "size": 1000, "body": {}} if active_since is not None: query["body"]["query"] = { "range": {"last_charge_date": {"gte": str(a...
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def with_metaclass(meta, *bases): """Compatible metaclass :param meta: the metaclass :param *bases: base classes """ print("with_metaclass") return meta('temp_class', bases, {})
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import importlib def get_absolute_path_from_module_source(module: str) -> str: """Get a directory path from module source. E.g. `zenml.core.step` will return `full/path/to/zenml/core/step`. Args: module: A module e.g. `zenml.core.step`. """ mod = importlib.import_module(module) retur...
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def write_peak_bedtool_string(cluster): """ Format Peak into NarrowBed format :param cluster: Peak object :return: str, format to NarrowBed format with tab-delimited, [chrom, start, stop, name, pval, strand, thick_start, thick_stop] """ cluster_info_list = [ cluster.chrom, cluste...
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def save_kv_pairs(sreg, obj, qd, prefix): """ Look for keyvalue pairs in a query dict that match a certain prefix and save them to obj's keyvalue store. This function doesn't catch exceptions. If the key=='host_name' and value==fqdn, we don't need to save the key because its the default. """ ...
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def check_rules(metrics_sequence: list, rules: list, best_so_far: dict, init_metr: dict, metric_names: list, cur_gc: int) -> tuple: """Checks custom conditions and adds/removes available metrics. For each rule, we check the condition. If it is true - we apply the action and remove the rule. Args: ...
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def map_structure(op, *param_dicts): """ For a series of identically structured dicts, apply op to every same set of entries and return a single dict of the same shape """ ret = {} for k in param_dicts[0].keys(): ret[k] = op(*[param_dicts[i][k] for i in range(len(param_dicts))]) return ret
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def remove_empty_string_list(str_list): """ Removes any empty strings from a list of strings :param str_list: List of strings :return: List of strings without the empty strings """ return list(filter(None, str_list))
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import math def summer(n_terms, n_words): """ Computed as log(log(t)) / log(log(w)), where t is the number of unique terms/vocab, and w is the total number of words. (Summer 1966) """ try: math.log(math.log(n_terms)) / math.log(math.log(n_words)) except ValueError: retu...
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from datetime import datetime def sanitize_rrule(vevent): """fix problems with RRULE:UNTIL""" if 'rrule' in vevent and 'UNTIL' in vevent['rrule']: until = vevent['rrule']['UNTIL'][0] dtstart = vevent['dtstart'].dt # DTSTART is date, UNTIL is datetime if not isinstance(dtstart, ...
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import re def upper_to_under(var): """ Insert underscore before upper case letter followed by lower case letter and lower case all sentence. """ return re.sub('([a-z0-9])([A-Z])', r'\1_\2', re.sub('(.)([A-Z][a-z]+)', r'\1_\2', var)).lower()
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def compress(s: str) -> str: """ Compress `s` by dropping spaces before ' ,.' characters and ensuring there is exactly one space before question mark """ dest = "" for a, b in zip(s, s[1:]): if a == ' ' and b in " ,.": pass # do not append to dest elif a != ' ' and b == '?': dest += a + ' ' else: d...
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from datetime import datetime import pytz def to_iso_time(timestamp): """Receives an arbitrary timestamp in UTC format (most likely in unix timestamp) and returns it as ISO-format. :param timestamp: arbitrary timestamp :return: timestamp in ISO 8601 and UTC timezone """ if isinstance(timestamp, (...
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def get_fields(feature): """Return a dict with all fields in the given feature. feature - an OGR feature. Returns an assembled python dict with a mapping of fieldname -> fieldvalue""" fields = {} for i in range(feature.GetFieldCount()): field_def = feature...
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def calcChecksum(data): """ Calculate a checksum """ checksum = 0 for a in range(len(data)): checksum += data[a] return checksum.to_bytes(3, 'big')
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import argparse import ast def cmdline_args(): """Parse command line arguments Returns: [type]: Argparser values """ # Make parser object p = argparse.ArgumentParser( description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter, ) p.add_argument("confi...
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def _format_inputs(x): """Transform inputs into (m,n,1) format for cost/activation functions. Returns formatted array. """ if x.ndim == 1: # vector return x.reshape(1, -1, 1) elif x.ndim == 2: if x.shape[0] == 1: # either single-row matrix or 1x1 matrix return x.T.resh...
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def _GetPrincipleQuantumNumber(atNum): """ Get the principle quantum number of atom with atomic number equal to atNum """ if atNum<=2: return 1 elif atNum<=10: return 2 elif atNum<=18: return 3 elif atNum<=36: return 4 elif atNum<=54: return 5...
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from typing import List import os def has_experiment_run( save_dir: str, experiment_name: str, run_names: List[str] ) -> bool: """ Verifies that the experiment ran for all run names """ base_path = f"{save_dir}/{experiment_name}" for run_name in run_names: if not os.path.exists(f"{base_path}/{...
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import re def bash_newliner(line_decode,log=None): """Handle weird newlines in BASH streams.""" # note that sometimes we get a "\r\n" or "^M"-style newline # which makes the output appear inconsistent (some lines are prefixed) so we # replace newlines, but only if we are also reporting the log file on the li...
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def mjd2lst(mjd, lng): """ Stolen from ct2lst.pro in IDL astrolib. Returns the local sidereal time at a given MJD and longitude. """ mjdstart = 2400000.5 jd = mjd + mjdstart c = [280.46061837, 360.98564736629, 0.000387933, 38710000.0] jd2000 = 2451545.0 t0 = jd - jd2000 t = t0/36525. ...
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import math def orbittime_vrt(orbitalspeed,radius): """Usage: orbittime_vrt(orbital speed, radius of orbit)""" return (2*math.pi*radius)/orbitalspeed
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def __get_ip_address(request): """ Get ip address from request :param request: :return: """ ip = request.META.get("HTTP_X_FORWARDED_FOR", "") if not ip: ip = request.META.get('REMOTE_ADDR', "") client_ip = ip.split(",")[-1].strip() if ip else "" return client_ip
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def rect(rng, lines, columns): """ return i, j, width, height""" w = rng.randint(1, max(1, lines // 2)) h = rng.randint(1, max(1, columns // 2)) i = rng.randint(0, lines - h) j = rng.randint(0, columns - w) return i, j, w, h
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import os def _is_file_newer(path, other_paths, no_exist=True): """ Check whether the file located in `path` is newer than all the files located in `other_paths`. :param path: String with full path for the file. :param other_paths: String or list of strings with full paths for ot...
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def postpend_str(base_word: str, postpend: str, separator: str='') -> str: """Appends str:postpend to str:base_word with default str:separator, returns a str """ return f'{base_word}{separator}{postpend}'
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def updates(): """ Baseline for Thread updates. """ UPDATES_DATA = { 'em_resolutions': [ { "em_id": 1, "em_title": "EM title 1", "em_text": "EM text 1", "resolutions": [ {'id': 1, 'title': 'Resolution...
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def uniform(n: int) -> tuple: """ Return a Uniform(n) distribution as a tuple. """ return (1.0 / n, ) * n
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def header(request_headers): """ 将浏览器中的Request Headers头复制过来.进行改装成字典类型 :param request_headers: 浏览器中的Request Headers头信息 :return: 分割Headers头信息的键值对 """ headers = dict() request_headers = request_headers.strip() for head in request_headers.rsplit('\n'): name, values = head.split(':',...
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import glob import os import logging def _get_validity_issues_for_aggregated_projectcounts_generic( csv_dir_abs, total_expected, desktop_site_expected, mobile_site_expected, zero_site_expected, current_date_strs): """Gets a list of obvious validity issues for a directory of CSVs :param csv_di...
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def player_died(enemyy, enemyx, playery, playerx, enemy_rect): """This function checks if player died or not""" pos_player = playerx, playery if enemy_rect.collidepoint(pos_player): return True else: return False
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def get_all_pipeline_names(scripts_dict): """ Returns the names of the supported pipelines on the cluster. Does so by returning all keys in scripts dictionary except for "All Pipelines" input: scripts_dict: scripts dictionary described in get_scripts_dict function """ return [pipeline...
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def extended_euclidean_algorithm(a, b): """Extended Euclidean algorithm Returns r, s, t such that r = s*a + t*b and r is gcd(a, b) See <https://en.wikipedia.org/wiki/Extended_Euclidean_algorithm> """ r0, r1 = a, b s0, s1 = 1, 0 t0, t1 = 0, 1 while r1 != 0: q = r0 // r1 ...
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import os import argparse def FileType(f): """ given a string path to a file, F, verify it can be used. """ f = os.path.abspath(f) if not os.path.exists(f): raise argparse.ArgumentTypeError('FileType:%s does not exist' % f) if not os.path.isfile(f): raise argparse.ArgumentTypeError...
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def getRelevantInfoList (dataDict): """Returns a list of dictionaries (songs) with the relevant/useful information from JSON object string returned from API call given in the form of a dictionary.""" relevantInfoList = [] apiAllTracks = dataDict['tracks']['track'] for track in apiAllTracks: rele...
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def rotate(text, key): """ Caesar cipher the provided text with the provided key. :param text string - Text to cipher. :param key string - The key to use in the cipher. :return text - ciphered text """ alpha = 'abcdefghijklmnopqrstuvwxyz' out = '' for index, char in enumerate(text):...
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def isoformat(dt): """ Formats a datetime object to an ISO string. Timezone naive datetimes are are treated as UTC Zulu. UTC Zulu is expressed with the proper "Z" ending and not with the "+00:00" offset declaration. :param dt: the :class:`datetime.datetime` to encode :returns: an en...
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def get_region_dir(hparams): """Return brain region string that combines region name and inclusion info. If not subsampling regions, will return :obj:`'all'` If using neural activity from *only* specified region, will return e.g. :obj:`'mctx-single'` If using neural activity from all *but* specified ...
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import math import random def generate_next_population(individuals, toolbox): """ Perform truncated selection with elitism. :param individuals: :param toolbox: :return: """ individuals = [toolbox.clone(ind) for ind in individuals] individuals.sort(key=lambda x: x.error) offspring ...
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import os import time def args_jupyter(args, seed): """ When using jupyter, arguments are entered as a dictionary :3 """ if not(os.path.exists('data')): os.makedirs('data') logdir = args.get('exp_name', 'vpg') + '_' + args.get('env_name') + '_' + time.strftime("%d-%m-%Y_%H-%M-%S") logd...
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import random def shuffle(context, value: str): """ Sample filter """ letters = list(value) random.shuffle(letters) return ''.join(letters)
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def _call(partial, *args, **kwargs): """Calls a partial created using `make`. Args: partial: The partial to be called. *args: Additional positional arguments to be appended to the ones given to make. **kwargs: Additional keyword arguments to augment and override the ones ...
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from datetime import datetime def from_isoformat(t): """Converts time from ISO-8601 string to datetime object""" return datetime.strptime(t, "%Y-%m-%dT%H:%M:%S.%f")
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def strip_figure(figure): """Strip a Plotly figure into multiple figures with a trace on each of them. Parameters ---------- figure : dict or Figure Plotly figure to strip into multiple figures. """ if figure is not None: if isinstance(figure, dict): pass ...
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def get_telemetry_data(data): """ Returns tuple of telemetry data""" pos_x = float(data["telemetry"]["pos_x"]) pos_y = float(data["telemetry"]["pos_y"]) time = float(data["telemetry"]["time"]) velocity = float(data["telemetry"]["velocity"]) return pos_x, pos_y, time, velocity
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def reformat_variable(var, n_dim, dtype=None): """This function takes a variable (int, float, list, tuple) and reformat it into a list of desired length (n_dim) and type (int, float, bool).""" if isinstance(var, (int, float)): var = [var] * n_dim elif isinstance(var, (list, tuple)): if l...
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from typing import Callable from typing import Optional import types def copy_definition( definition: Callable, name: Optional[str] = None ) -> Callable: """ Copies a definition with same code, globals, defaults, closure, and name. Parameters ---------- definition Definition to be...
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import itertools def sublists(lst, min_elmts=0, max_elmts=None): """Build a list of all possible sublists of a given list. Restrictions on the length of the sublists can be posed via the min_elmts and max_elmts parameters. All sublists have will have at least min_elmts elements and not more than m...
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import zipfile def create_xml_list_from_zip(filepath): """ Opens the .zip file and extracts a list of .xml filenames :param filepath: filepath to the .zip file :return: list of .xml filenames """ return list(filter(lambda x: x[-3:] == 'xml', zipfile.ZipFile(filepath, 'r').namelist()))
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import os def is_exe(path): """Check if a given path is an executable file - from: http://stackoverflow.com/a/377028""" return os.path.isfile(path) and os.access(path, os.X_OK)
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def predict(model, data_loader): """Runs the model on the given data.""" model.eval() result = [] for i, batch in enumerate(data_loader, 1): input_data = batch['img_stack'] z_slices = batch['z'] channels = batch['c'] ids = batch['file_name'] inputs = input_data.cuda() outputs = model(...
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import re def extractIdentifierFromFullURL(url): """Extracts just the PID from a full URL. Handles URLs on v1 or v2 and meta/object/resolve/etc endpoints. Arguments: url : str Returns: None if no match. Otherwise returns the identifier as a string. """ if not isinstance(url, str): ...
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import pathlib def helper_initial_state(ib): """Helper function for checking IGRABase initial state""" state = ( isinstance(ib.filename, pathlib.PurePath), ib.raw_data == {}, ib.converted_data == {}, ib._header_name_index == {}, ib._header_units == {}, ib._param...
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def find_length_from_labels(labels, label_to_ix): """ find length of unpadded features based on labels """ end_position = len(labels) - 1 for position, label in enumerate(labels): if label == label_to_ix['<pad>']: end_position = position break return end_position
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def normalize_sizes(sizes, dx, dy, minimum_size=0.01): """Give each size a value between 0-1 Arguments: minimum_size (float, optional): Minimum size ratio, to keep dominant values from completely obstructing the view of smaller sizes """ minsize = max(sizes) * minimum_...
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def fileContents(fn): """ Return the contents of the named file """ return open(fn, 'rb').read()
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def twoSum(self, nums, target): """ :type nums: List[int] :type target: int :rtype: List[int] """ minus_dict = dict() for i in range(len(nums)): if nums[i] in minus_dict: return [minus_dict[nums[i]], i] else: minus_dict[target-nums[i]] = i
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def count_elements(seq) -> dict: """Tally elements from `seq`.""" hist = {} for i in seq: hist[i] = hist.get(i, 0) + 1 return hist
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def identify_known_accounts(account_aliases, account_id): """ Given a known list of account IDs from yaml config, append note about their account if they're known to us. :return: Account description """ # If the accounts custom aliases yaml file does not exist just default to normal behavior if ...
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def binary_search_2(alist, item): """二分查找非递归实现""" n = len(alist) first = 0 last = n - 1 while first <= last: mid = (first + last) // 2 if item == alist[mid]: return True elif item > alist[mid]: first = mid + 1 else: last = mid - 1...
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def func_bad_argname(NOT_GOOD): # [invalid-name] """Function with a badly named argument.""" return NOT_GOOD
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def _quote_header(s): """INTENAL: quote a string to be used in a stub header.""" return s.replace('\n', '\n ')
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import argparse def EnvVarKeyType(key): """Validator for environment variable keys. Args: key: The environment variable key. Returns: The environment variable key. Raises: ArgumentTypeError: If the key is not a valid environment variable key. """ if not key: raise argparse.ArgumentTypeErr...
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def roar(): """ Does a roar! """ return "Roarr!!"
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import timeit def singleTrial(n, items, m=2, M=4): """Conduct timing trials for sample values of m,M given n.""" numReps = 1 numTrials = 1 itemSet = 'items=[]\n' for item in items: itemSet = itemSet + 'items.append(Region' + str(item) + ')\n' searchSet= '...
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import re def parse_attributes_block_identifier(block): """Return the identifier in `block`. Parameters ========== block : string Block to search in Returns ======= Either: identifier : string If identifier found None If no identifier found...
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import re def find_matching_pattern(List, pattern): """ Return elements of a list of strings that match a pattern and return the first matching group """ reg_pattern=re.compile(pattern) MatchedElements=[] MatchedStrings=[] for l in List: match=reg_pattern.search(l) if m...
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import os def make_tmp_file(filename, output_dir=None): """ returns a temporary file of extension .pyccel that will be decorated with indent/dedent so that textX can find the blocks easily. filename: str name of the file to parse. output_dir: str directory to store pyccel file ...
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import sys def get_std_encoding(stream): """ Get encoding of the stream Args: stream: stream Returns: encoding or file system encoding """ return getattr(stream, "encoding", None) or sys.getfilesystemencoding()
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def show_toolbar(request): """ Only show Django Toolbar for user "fasand" or "petr" """ return (not request.is_ajax() and not request.user.is_anonymous and (request.user.username == "fasand" or request.user.username == "petr"))
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import time def time_configure(update_time: str) -> tuple: """ function uses time in a format 'HH:MM' to translate it to seconds left. Also function considers a missing value for time and assume it as an instant update. :param update_time: 'HH:MM' time of the update :return: content for an update ...
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def modify_data(data): """ for easier use in templates, it joins the due_in and due today fields together """ data["due_soon"] = {} if "due_in" in data: data["due_soon"].update(data["due_in"]) if "due_today" in data: data["due_soon"].update(data["due_today"]) # combine "my_tasks" from multiple...
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def get_total(taxa_list, delim): """Return the total abundance in the taxa list. This is not the sum b/c taxa lists are trees, implicitly. """ total = 0 for taxon, abund in taxa_list.items(): tkns = taxon.split(delim) if len(tkns) == 1: total += abund return total
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import re def punctuation_density(text, punctuation=r'[^\w\s]'): """Returns the punctuation density of the given text. Arguments: text (str): The input text. punctuation (str): A regex pattern for matching punctuation characters. Defaults to r'[,.!?:;\\/]'. Returns: (f...
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def _wrap_data_func(func, func_name): """ Wrapper to call func with data values """ def f(self, *args, **kwargs): data = self._data result = func(data.values, *args, **kwargs) return result f.__doc__ = ( """ Call ``%s`` using automatic mapping. - ``X`...
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def create_subparser(subparsers): """Creates this module's subparser. Args: subparsers: Special handle object (argparse._SubParsersAction) which can be used to add subparsers to a parser. Returns: Object representing the created subparser. """ parser = subparsers.add_pa...
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from datetime import datetime import pytz def GetCurrentDate(): """The current date helper.""" return datetime.now(pytz.utc)
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def validate(message): """ Check if the message is in the correct format. """ if not ('x' in message and 'y' in message): return False if not(isinstance(message['x'], float)) or not(isinstance(message['y'], float)): return False return True
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def GetMountSummary(mount): """ Display a summary of mount on the system """ out_string = ("{mnt: <#020x} {mnt.mnt_data: <#020x} {mnt.mnt_devvp: <#020x} {mnt.mnt_flag: <#012x} " + "{mnt.mnt_kern_flag: <#012x} {mnt.mnt_lflag: <#012x} {vfs.f_fstypename: >6s} " + "{vfs.f_mn...
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def get_document(document_name): """ This function responds to a request for /api/document-base with the patient's records :return: pdf document """ # Create the list of people from our data with open(document_name, "r") as f: return f.read()
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def linearize(solution): """Converts a level-ordered solution into a linear solution""" linear_solution = [] for section in solution[0]: for operation in section: if not (operation.op[0] == 'P' and operation.op[1].isupper()): linear_solution.append(operation) return...
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def option_to_cblas(x): """As above, but for CBLAS data-types""" return { 'layout': "CBLAS_ORDER", 'a_transpose': "CBLAS_TRANSPOSE", 'b_transpose': "CBLAS_TRANSPOSE", 'ab_transpose': "CBLAS_TRANSPOSE", 'side': "CBLAS_SIDE", 'triangle': "CBLAS_UPLO", 'diago...
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def get_remote_name(spec): """ Return the value to use for the "remote_name" parameter. """ if spec.mitogen_mask_remote_name(): return 'ansible' return None
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def _is_module(pkg): """ Is this a module pacakge. Eg. foo-1-2.module+el8.1.0+2940+f62455ee.noarch or for el9: foo-1-2.module_el9+96+b062886b """ return '.module+' in pkg.release or '.module_' in pkg.release
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import pprint def check_integrity(data_pool, simulation_list): """Check the integrity of a list of Simulation objects against a given DataPool. """ # Process: # 1. Check that the simulations are unique # 2. Check that all the datastates are unique # 3. Check that the links...
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def arg_hex2int(v): """ Parse integers that can be written in decimal or hex when written with 0xXXXX. """ return int(v, 0)
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import itertools def get_vocabulary(X, f): """Determine unique words on the dataset. :param X: List of tokenized sentences :param *preprocess: p_-like preprocessing functions """ f = f or (lambda x: x) vocab = set(['<unk>', '<num>']) for i, word in enumerate(itertools.chain(...
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import math def Urms_calc(ua,ub,uc): """Function to calculate rms value of scalar phasor quantities.""" return math.sqrt((pow(abs(ua),2)+pow(abs(ub),2)+pow(abs(uc),2))/3.0)/math.sqrt(2)
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import csv def load_log(filename): """ Load the contents of a single log file. """ time = [] code = [] mesg = [] with open(filename, "r") as csvfile: reader = csv.reader(csvfile) for t, c, m in reader: time.append(float(t)) code.append(int(c)) ...
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