content
stringlengths
35
416k
sha1
stringlengths
40
40
id
int64
0
710k
def SmvHistoricalValidators(*validators): """Decorator to specify set of validators to apply to an SmvDataSet. Each validator should specify the standard `metadata` and `validateMetadata` methods. In addition, each validator will have a unique key defined that will determine how it is stor...
f7eabfcf75de960323d07f897d74fa637969b6ad
659,048
def get_end_index_of_a_paragraph_from_string(text, start=0): """ :param text: a string :param start: the index of the start position :return: the index of the new line character or the last character """ return min(len(text) - 1, text.find('\n', start))
25d0918749477029b2103b560be3d2556a9bb2ac
659,049
def assign_labels_colors(labels, colors): """ Takes a list of labels and colors and assigns a unique label to each color. Returns a color_list of length(labels). The colors will loop around if the number of unique labels are more than the number of unique colors :param labels: :param colors: :re...
79984b3de57a7c5782282f30a87564dd139a346f
659,051
from typing import Union from pathlib import Path def path_resolver(f: Union[str, Path], *, touch: bool = True) -> Path: """Resolve a path. Parameters ---------- f : Union[str, Path] File whose path needs to be resolved. touch : bool Create file is not already existent. Default: T...
df3caefaec5ded71658f0f99686008e2a1a27272
659,052
import subprocess def expand_target_path_on_host(target, target_path): """Attempts to expand target path on remote host. This is incase ~ is used. """ completed_process = subprocess.run( [ "ssh", target, f'python3 -c "import os; print(os.path.join(...
38a8cd995aa95d900e778bc23d0450c96430add6
659,053
def format_timedelta(timedelta): """ convenience function to convert timedelta object into %HH%MM%SS string, since strftime isn't defined for timedelta objects """ seconds = timedelta.seconds % 60 minutes = (timedelta.seconds % 3600) // 60 hours = timedelta.days*24 + timedelta.seconds // 3600 ...
721005b2844a0ca9eaebeab0c2fc76a20305400b
659,054
def format_timestamp(time_stamp): """Create a consistent datetime string representation based on ISO 8601 format. YYYY-MM-DDTHH:MM:SS.mmmmmm for unaware datetime objects. YYYY-MM-DDTHH:MM:SS.mmmmmm+HH:MM for aware datetime objects :param time_stamp: value to convert :type time_stamp: datet...
eec7386c898da42bfee9e22d19f015ba1ce398b3
659,055
def g5halves(x): """g5halves(x), equal to -g_{5/2}(-e^x)""" if (x<1e-4): return x else: return 0.999856*x + 0.179586*x**2 + 0.0296957*x**3 + 0.328735*x**4 -1.90262*x**5 + 9.61982*x**6 - 38.0899*x**7 + 121.384*x**8 - 313.11*x**9 +655.703*x**10 - 1112.32*x**11 + 1517.67*x**12 - 1643.55*x**13 ...
82204e7ff9872e1bb52babd1f98949b8c8514121
659,056
def validate_slice_int(the_int: int, bound: int, include=True): """ Ensure that the given integer makes sense as a slice entry, and move to a normalized form. Parameters ---------- the_int : int bound : int include : bool Returns ------- int """ if not isinstance(b...
1bc20d825e41c1f8cf2283fed9a1ee607101f0c2
659,057
import sys def argument_reader(): """Reads the 7 arguments in from the command line and checks if they're of the correct format""" arguments = sys.argv[1:] Csin = int(arguments[0]) Csout = int(arguments[1]) Crin = int(arguments[2]) Crout = int(arguments[3]) Sin = int(arguments[4]) Rin...
f20a85dc6b654ddcebd5b568f4db167f6775b328
659,058
import hashlib def get_sha1_hash(password): """For a given password string, utf-8 encode it and hash it with SHA1.""" encoded = password.encode('utf8') hashed = hashlib.sha1(encoded).hexdigest() return hashed
a7155cd1da31930fbc2f7a24875b75f3b444354c
659,059
import json def read_lane_stats( lane_file ): """ Read RUN001_Lxxx.stats.json file created in bbi-sciatac-demux pipeline run. These files are in the demux_out/fastqs_barcode directory. The run is always RUN001 and the Lxxx denotes the results for each lane; that is, L001, ... """ lane_stats = json.load( l...
be161f2c64f87a22092b6528928053f89b0d8f93
659,062
import math import numpy def extrude2d(x, y, limits, n=None, ds=None, force=False): """Extrude the two-dimensional section along the third direction (z). Parameters ---------- x : numpy.ndarray x-coordinates of the section. y : numpy.ndarray y-coordinates of the section. limit...
f438ab12f1988273021a1f6f64f48234bab61d7b
659,063
import sys import os def locate_spy_file(file_name): """Tries to find shellpy file on filesystem. Given a filename without extension it tries to locate it with .spy extension in pythonpath :param file_name: Filename without extension :return: Path to shellpy file or None if not found """ for ...
300622ded5ead0449c9e71b7c45520b24006e4c9
659,064
def mysql_old_passwd(password, uppercase=True): # prior to version '4.1' """ Reference(s): http://www.sfr-fresh.com/unix/privat/tpop3d-1.5.5.tar.gz:a/tpop3d-1.5.5/password.c http://voidnetwork.org/5ynL0rd/darkc0de/python_script/darkMySQLi.html >>> mysql_old_passwd(password='testpass', uppe...
bdc589d119193ec03f3152d6e65b0ec241528eca
659,065
def key(name): """Extracts the filename key.""" dot = name.rfind(".") if -1 != dot: return name[0:dot] return ""
22e52edec1e3ea4a021881da1085f8d812ab59bf
659,066
def is_a_reverse_shallow_copy_list(x, y): """ Return :bool:`True` if 'y' is a reversed copy of 'x' and :bool:`False` otherwise. """ return x == list(reversed(y))
46cca39ed238eec27be65c638bbef331a0a85353
659,068
import sys import argparse def process_command_line(argv): """ Return a 2-tuple: (settings object, args list). `argv` is a list of arguments, or `None` for ``sys.argv[1:]``. """ if argv is None: argv = sys.argv[1:] # initialize the parser object: parser = argparse.ArgumentParser( ...
fd4a940eb17c35a258f0fead00e19fc314247993
659,071
from typing import Dict from typing import Any def _process_replacement(line: str, parameters: Dict[str, Any]) -> str: """Appropriately replace a single <replace> statement.""" new_line = line.format(**parameters) if None in parameters.values(): raise ValueError("Found a parameter with no specifie...
162d008feda8b84820afb244b8f6a458d5014f5e
659,072
def _swap(bytestring: str) -> str: """Swap characters pairwise in a string. This corresponds to a "byte swap". Args: * bytestring (str): input. The length should be an even number. Return the string with characters swapped. """ length = len(bytestring) if length % 2: rais...
45f72840c6aa3f3b3eae11e35c41e587abc05b22
659,073
from pathlib import Path def req_exists(r): """ Checks whether a dependency exists on a drive. """ if type(r) is str: if not Path(r).is_file() and not Path(r).is_symlink() and not Path(r).is_dir(): return False elif type(r) is list: return not (False in map(req_exists, r)) ...
97ced7dea3e0e617ef11ad0261113d93f02b01b8
659,076
def syncFn1(n): """sync fucntion""" print(f"start:fn({n})") print(f"finish:fn{n}") return f"finish:fn{n}"
52faa79ee79c075cb7e3072f089b739c0c1a7a69
659,077
def seat_number(seat): """Return the consecutive seat number (8 seats per row).""" rows, columns = list(range(128)), list(range(8)) for character in seat: if character == 'F': rows = rows[:len(rows) // 2] elif character == 'B': rows = rows[len(rows) // 2:] eli...
3a2ce437a0658f19c87bc3262e2a54a98f224eab
659,078
def points(games: list) -> int: """ This function counts the points of our team in the championship. """ score = 0 for item in range(len(games)): x = games[item][0] y = games[item][2] if x > y: score += 3 elif x == y: score += 1 return score
dd61eaed8b0718b4c996453cc4c06da9a1e45a9f
659,080
def galaxy_attrib(): """ List of properties expected to be stored for CASBAH galaxies """ attrib = [ (str('RA'), float), # RA (J2000) (str('DEC'), float), # DEC (J2000) (str('Z'), float), # Redshift (str('Z_ERR'), ...
eeefad62745dcc92bacd76743b83ef9d5ce19084
659,081
def inject_participant(team, participant, team_size, rnd) -> bool: """ For a given team and participant, return True if a participant should be injected. """ # Don't add more than team_size members. if team.member_count() >= team_size: return False # Allow two Indians in first, owing to their...
03516878bd97f57ebf06f6702812c38f460c6f83
659,082
def test_names_list(test_suite): """Build a list containing all the test names of a test suite.""" test_names = [] for test in test_suite.test_cases(): test_names.append(test.description) return test_names
3418cf021cb9c1de1ef0f2b007de4ee6efbd9d8f
659,083
def get_action(): """ Find out what the player wants to do next. """ print() print("What do you want to do next?") print(" m) move") print(" a) fire an arrow") action = input("> ") if action == "m" or action == "a": return action else: print() print(action + "?") ...
5c3332650ce6fba913db2dda049e1e12262bb283
659,084
def process_names(raw_names): """ Processes the names to be used as inputs for the model. Spaces are changed by 0, hyphens by 1 and end of names are delimited by 2 """ names = [] for name in raw_names: name = name.lower() if ' ' in name: name = '0'.join(name.split()) ...
b5db06aaf169aa8069e83a3b5f6c25784a827b7a
659,086
def _getGeoTransform(xyData, xres, yres): """Adpated to accomodate the orientation expected by geotiffs. """ xmin, ymin, xmax, ymax = [xyData[:, 0].min(), xyData[:, 1].min(), xyData[:, 0].max(), xyData[:, 1].max()] ncols = round(((xmax - xmin) / xres) + 1) nrows = round(((...
e799a3e6dec48edc40090eb9a22007fb3deedde7
659,087
def model_device(model): """Determine the device the model is allocated on.""" # Source: https://discuss.pytorch.org/t/how-to-check-if-model-is-on-cuda/180 if next(model.parameters()).is_cuda: return 'cuda' return 'cpu'
a827a48a5f71bf0a6a3f264de6016248f0a1f0ce
659,089
import imp def get_curved_roads(source_file): """ Given a source file, get the dict of curved roads. """ data_module = imp.load_source('local_data', source_file) return data_module.curved_roads
8f08658cd1cb1e07d4b10e89b683a8c3818b44fe
659,090
import math def binomial_coefficient(n: int, k: int) -> int: """Calculate Binomial coefficient""" n_fac = math.factorial(n) k_fac = math.factorial(k) n_minus_k_fac = math.factorial(n - k) return round(n_fac/(k_fac*n_minus_k_fac))
b15da267b67d09df0fd93ac65d088ee739a0d9c0
659,091
import string import random def randstr(nchars=10): """Creates a random string identifier with the given number of chars""" chars = string.ascii_letters + string.digits ret = ''.join([random.choice(chars) for i in range(nchars)]) return ret
7576805a9f3474758ae1237c6efea14ef90bfff8
659,092
import random def key(_): """Функция""" return random.random()
eae0b0fc364aabd54bd48d5817dd3df39dbf552f
659,093
from datetime import datetime def string_to_time(time: str): """ :param time: :return: """ return datetime.strptime(time, "%H:%M:%S")
85649fd445f3d2c8257a6dacd48af5ee9247b6f2
659,094
def gen_array(fen): """" Generate array from FEN """ slash_index = [pos for pos, char in enumerate(fen) if char == '/'] arr = [] i = 0 for el_ in slash_index: if slash_index[-1] == el_: arr.append(fen[i:el_]) arr.append(fen[el_+1:]) else: arr.appe...
fb984d210760ad9f4c5254c8c2a37bad8e49d2c6
659,095
def tag_simplify(tag): """转化为单标签""" temp = [0 for i in range(len(tag))] max = float('-inf') id = 0 for i in range(len(tag)): if tag[i] > max: max = tag[i] id = i temp[id] = 1 return temp
d6df425d2c3b1ce84f40e0d3cc0cf09ee334fb6c
659,096
def dbTables(): """ db tables to init """ return [ { 'name': 'bot', 'schemas': [ { 'name': 'id', 'type': 'string', 'primary': True }, { 'name': 'token', 'type': 'json' }, { 'name': 'data', ...
25202a2aa705a973ce9db46462472152db54af1b
659,099
def _format_function(func_name): """Provide better context for a "function" of the caller. """ if func_name is None: return "" elif func_name == "<module>": return " (top level stmt)" else: return " in " + func_name
c4699a2e2e49f461f469a85f1af85fffc408d104
659,100
def reformat_tract_code(tract: str, state_code: str, county_code: str) -> str: """Helper function to return GEOIDs compatible with those in deep-dive data files. Parameters ---------- tract : A string An unformatted tract code, e.g. '53.38' state_code : A string The FIPS code for th...
4b96694b47e91f3d400f7987ee690b7af0fb9573
659,101
def nil(): """ -> list[alpha] """ return []
1dc0ff780c6502e888fc8c6d771b4f6c7521841f
659,102
def xunicode(s): """If ``s`` is None return empty string .. deprecated:: Use :func:`xstr` instead. :param s: string :return: s or an empty string if s in None :rtype: str """ return '' if s is None else str(s)
b45f6197e9a3631cba6da6ef8248c8238d544cc2
659,103
def same_level_stars(prev, curr): """Two stars in a row can exist on the same level if the previous is inline""" two_stars = prev.is_stars() and curr.is_stars() return two_stars and prev.depth == curr.depth and prev.is_inline_stars()
1b6db251338f38520af655c97a25363fc1e78be7
659,104
def _safe_mesos_dns_taskname(task_name): """Converts a potentially slash-delimited task name to one that works for '.mesos' task names Mesos DNS task names handle folders like this: /path/to/myservice => myservice-to-path""" elems = task_name.strip("/").split("/") elems.reverse() return "-".join(ele...
71189da614287f835448be4709c9e120ba16e725
659,105
def get_list_of_subsets(subset_task): """ Get the subsets to process for this analysis Parameters: ----------- subset_task: string string which specifies which subsets to use Results: -------- list of subset tasks """ # prefix for data and images if subset_task =...
c4d2e632bf4c70ef3232505694d86b1c48a9a0de
659,106
def mean_of_number_list(numbers, delim="_"): """Report arithmetic mean of a string of integers that are separated by a common delimiter. Used here to get mean of IES lengths reported in MILRAA output GFF attribute. Parameters ---------- numbers : str List of numbers separated by a commo...
2b1c04ba67ed0dac279fbc9ca6dd8458575f5f69
659,107
def branch_population(merged_population): """ create an unmerged population representation """ feasible_pop = [] infeasible_pop = [] for instance in merged_population: if instance.feasibility: feasible_pop.append(instance) else: infeasible_pop.append(ins...
842049e6201d8d3d8dd4f220bdaaccb790cf1bce
659,108
def odd_elements(array): """ """ odd = set() for item in array: if item in odd: odd.remove(item) else: odd.add(item) return odd
79c99b88a282c3db817825062e8f17854a5b8c8f
659,109
def loadLowFreqLabels(labelFilePath): """ Return dictionary of channel labels. :param labelFilePath: path to the data. The path should end with the folder containing all data for a specific house. :type labelFilePath: str :rparam: keys=channels_x - appliance name :rtype: dict """ ...
241ef9b58d01c24e36d28e855563af3b91e145f0
659,110
def unpack_arch(architecture): """ :param architecture: dict. containing num. of units in every layer (2-layer FC network) :return: input_size, hidden_size, output_size of NN """ input_size = architecture["state_dim"] hidden_size = architecture["hidden_units"] output_size = architecture["nu...
ac84f930b4c73b20e27c938288277028793d34c0
659,111
def rmpHomozygousWithTheta(theta, pu): """ Notation from Baldings and Nichols (1994) taken from Buckleton FSI Gen (23) 2016; 91-100 https://doi.org/10.1016/j.fsigen.2016.03.004 """ # 2theta + (1-theta)*pu numerator1 = (theta+theta) + (1-theta)*pu # 3theta + (1-theta)*pu == theta + numerator1 numerator...
4d51059c75bc357d96397165fe7df3b4b9eeee32
659,112
def find_root(array, value): """ Find the root and balance Complexity: O(logN) """ if array[value] != value: array[value] = find_root(array, array[value]) return array[value]
f0c2d0e1e2af9cc200e201a4b67696e5920b5241
659,113
import random def step_i__get_dxdydz(r, log, eps=1.e-7): """ Generation of shifts from screw rotations. """ dx0, dy0, dz0 = 0, 0, 0 if(abs(r.dx)>eps): dx0 = random.normalvariate(0,r.dx) if(abs(r.dy)>eps): dy0 = random.normalvariate(0,r.dy) if(abs(r.dz)>eps): dz0 = random.normalvariate(0,r.dz) return d...
a99a3d4a59eb8e587ff26a24275ecf53a3ff094a
659,114
def bytes_to_gb(number: float) -> float: """ Convert bytes to gigabytes. Parameters ---------- number : float A ``float`` in bytes. Returns ------- float Returns a ``float`` of the number in gigabytes. """ return round(number * 1e-9, 3)
d97ac89429c7ebc321e44fe3d8b33c1a0f1288c7
659,115
import re def default_output_mixer_channel(discovery_props, output_channel=0): """Return an instrument's default output mixer channel based on the specified `devicetype` and `options` discovery properties and the hardware output channel. This utility function is used by the ziPython examples and retu...
5e927a8e2ff3596ea08d55b723b9d664531ca271
659,116
import click def burst_limit_option(func): """Add a burst limit option.""" return click.option('--burst-limit', help='Number of simultaneous file changes to allow.', default=0, type=click.INT)(func)
20bc959c2bc5ae93107a2503f36550801e35013f
659,117
def empty_list (): """ Creates a new empty list. :return: A frest list :rtype: dict """ return { "head" : None, "tail" : None }
f1b5e1252b6da513e83acf04108ac0eeca10c1c2
659,118
import torch def root_sum_of_squares(x, dim=0): """ Compute the root sum-of-squares (RSS) transform along a given dimension of a complex-valued tensor. """ assert x.size(-1) == 2 return torch.sqrt((x**2).sum(dim=-1).sum(dim))
e446eba20b70453630122a5543ae0f70b6063b5d
659,119
import random def getQuote(): """Returns an awesome randomized quotation.""" libraryFile=open('static/quotes.txt','r') library=libraryFile.readlines() return (random.choice(library)).split(';')
26781d964ab1045950641b00e8501c3e66ea0dab
659,121
def build_links(tld, region_code, states): """ This will build start_urls, It needs to be available before the ChipotleSpider creation :param tld: 3rd level domain name to use for building the links e.g .co.uk :param region_code: region is an important url param required for the search :param state...
d42291356a149b3a8e411a0bfe715d522c03da4a
659,122
import os def find_libxml2_include(): """Find lxml2 libraries to include in the extension""" include_dirs = [] for d in ['/usr/include/libxml2', '/usr/local/include/libxml2']: if os.path.exists(os.path.join(d, 'libxml/tree.h')): include_dirs.append(d) return include_dirs
cac5944f1f017d194b15019c633c728817a30f0e
659,123
import six def _reset_cached_subgraph(func): """Resets cached subgraph after execution, in case it was affected.""" @six.wraps(func) def wrapper(self, *args, **kwargs): result = func(self, *args, **kwargs) self._subgraph = None return result return wrapper
5cb500767cbed39ebdad3fede63b551e52c1747f
659,124
def dt_writer(obj): """Check to ensure conformance to dt_writer protocol. :returns: ``True`` if the object implements the required methods """ return hasattr(obj, "__dt_type__") and hasattr(obj, "__dt_write__")
fdb601d53bfe77b5732cbd0c5fe1108f20269841
659,125
def upstairs(n): """ 第n个台阶的走法有F(n) = F(n-2) + F(n-1)这两种,存一次类推,那么边界的话就是,如果0个台阶,那就有0种走法 如果第一个台阶,那就有1种走法,而第2个台阶,就有2种走法。 """ if n == 0: return 1 elif n == 1: return 1 elif n == 2: return 2 else: return upstairs(n - 1) + upstairs(n - 2)
1856c6afdd1d27063de15388d17fcf3531e7ccfd
659,126
def index(): """ Initial view or endpoint when visiting localhost:8000/ :rtype: Welcome and instruction for walkthrough via readme or localhost:8000/docs """ return { "👋 Hello": "Please refer to the readme\ documentation for more or visit http://localhost:8000/docs" }
b53ef0e1668af8d931a9c003d6ce00909d5f5e20
659,128
def _aggregate_at_state(joint_policies, state, player): """Returns {action: prob} for `player` in `state` for all joint policies. Args: joint_policies: List of joint policies. state: Openspiel State player: Current Player Returns: {action: prob} for `player` in `state` for all joint policies. ...
b2bed9b7b2b48a4a73989fe9a3bd9b241c4a40ad
659,129
from typing import Tuple import torch from typing import List def cross_entropy_loss(batch: Tuple, model: torch.nn.Module) -> Tuple[float, Tuple[torch.Tensor, List]]: """ Calculate cross entropy loss for a batch and a model. Args: batch: batch of groundtruth data model: torch model R...
158f08353fe83125c20ba34313611f0023338326
659,130
from pathlib import Path import platform def get_py_prefix(venv_path: Path) -> Path: """Return the appropriate prefix for the virtual environment's Python. >>> # If platform.system() is 'Windows' >>> get_py_prefix(Path.cwd()/'.venv') Path('.venv/Scripts/python.exe') >>> # If platform.system() is...
a81a185d24f6d7fac52aa9e68512e193811b3407
659,131
import json def load_json(filename): """Returns students as a list of dicts from JSON file.""" with open(filename) as f: students = json.load(f) return students
9730ae02f2409518f594b3014702915cdda5ad03
659,133
import os def get_experiment_paths(path: str ) -> tuple: """ Walk through path recursively and find experiment log files. Note: In a directory must exist a config.json and metrics.json file, such that path is detected. Parameters ---------- pa...
2e639e9f04cf16b4a548a46c1188908d332afd19
659,134
import typing def flatten_list(list_of_lists: typing.List[typing.List[typing.Any]]) -> typing.List[typing.Any]: """flatten a 2 level deep nested list into a single list Parameters ---------- list_of_lists: typing.List[typing.List[typing.Any]] 2 level nested list Returns ------- ...
eab91121f66cefc1ab7e43f5644544360f1e678c
659,135
import os def listdirfiles(dir): """ read spec or data directory :param dir: directory name :return: list of files in the given directory """ return os.listdir(dir)
273d5bba48d12093688c62183d0454de9a2b6a68
659,136
import os import json def load_metrics(exp_dir, filename='metrics.json'): """ Load metrics from the given exp directory.. Parameters ---------- exp_dir : ``str`` Folder to load metrics from filename : ``str``, optional (default: 'metrics.json') Name of metrics file Return...
bbf1600b00bf48598ab7499331bf1082404d3d80
659,137
def sqliteRowsToDicts(sqliteRows): """ Unpacks sqlite rows as returned by fetchall into an array of simple dicts. :param sqliteRows: array of rows returned from fetchall DB call :return: array of dicts, keyed by the column names. """ return map(lambda r: dict(zip(r.keys(), r)), sqliteRows)
93f897ca07db4edd14a303bef00e233b0a06a6e3
659,138
import linecache import inspect def _getCallerDict(callerDict=None, depth=2): """This is IT!!!!""" if callerDict is None: linecache.checkcache() frame = inspect.stack()[depth][0] try: return frame.f_globals finally: del frame return callerDict
9bf797e15508ba1a12d3534688a54bfd0f60ef35
659,139
import json def retrieve_exec_resp_fixture(): """Load execution response test fixture data.""" j = json.load(open("./tests/fixtures/execution_resp_obj.json")) return j
910c4dfc07bb025ce222a35592ffcaa174a0f088
659,140
def class_name(self): """ Return the name of this class without qualification. eg. If the class name is "x.y.class" return only "class" """ return self.__class__.__name__.split('.')[-1]
562c956cbdc8e724eea2733697c479a82a0f936b
659,141
import os import pprint def _get_dataset_files(dataset_info, mode, root, file_range): """Generates lists of files for a given dataset version.""" basepath = dataset_info.basepath base = os.path.join(root, basepath, mode) files = [ (int(f.split('-')[0]), os.path.join(base, f)) for f in ...
ee4197432b75050dcec16aef252625976c202275
659,142
import copy def rect_smooth(spectrum, m): """Rectangular smoothing function. Parameters ---------- spectrum: str a spectrum object m : int the smoothing width, must be an odd integer more than 3 Returns ------- smooth_spect: a spectrum object """ if m < 3: ...
e9f7ca5aea7f5ad27960738b4a86779cb21516c9
659,143
import re def parse_ivar_line(line): """ Description: Parse ivar line to get needed variables for vcf format. input: line - ivar tsv line return: CHROM, POS, ID, REF, ALT, QUAL, INFO, FORMAT, REF_CODON, ALT_CODON, pass_test, var_type """ line = re.split("\t", line) ...
ece2729ee76806b7601c05bfd13777e9b545dc32
659,144
def add_season_steps(df, season_length): """ Adds a column to the DataFrame containing the season step depending on the given season_length. The season step determines the position of each column within a season. It ranges from 0 to season_length - 1. :param df: pandas DataFrame with a DateTime index a...
d24c6dfc49821d5fb849d298834f988355afe359
659,146
def J(x, alpha): """ Calculates J as in eq (22) """ return 4. * x**(11./2. - alpha) / (1. + x**(3.-alpha))**(7./2.)
5621397bbd0dd3f0851160141a442c89dd533e67
659,147
def normalize(J): """Normalize a vector.""" # alpha = ellipse_azimuth(J) # gamma = phase(J) return J
5fdefea67287420c86284a836bffd00e089590eb
659,149
def _byte_string(s): """Cast a string or byte string to an ASCII byte string.""" return s.encode('ASCII')
db048e47ebbb964ee6d14d2c32a8d4dcd3b45ad4
659,150
def is_threaded_build(root): """ Check whether the tk build in use supports threading. :param root: the tk widget to be used as reference :return: ``1`` if threading is supported ``0`` otherwise """ return int(root.tk.eval("set tcl_platform(threaded)"))
554d92e51fabff650bf809662a16ca44f190c994
659,151
def bezierPoint(a, b, c, d, t): """Given the x or y coordinate of Bézier control points a,b,c,d and the value of the t parameter, return the corresponding coordinate of the point.""" u = 1.0 - t return a * u * u * u + b * 3 * u * u * t + c * 3 * t * t * u + d * t * t * t
1da9a9f0756b47c04ecd6f91f611d7c7d2f22760
659,152
import requests def current_location(): """ Get ISS Current location data """ url = "http://api.open-notify.org/iss-now.json" response = requests.get(url) return response.json()
22f3f1cd3d12d875dc2cc8364972b80a743e1c34
659,153
import json def read_categories_dict(): """ 读取code与名称的dict :return: dict """ file_name = "library_a_dict.json" file_object = open(file_name) json_object = json.load(file_object) return json_object
65918180f70f50b35dd74ebfca9f67196e03e885
659,154
def get_decoding_route_length(molecular_graph): """ Returns the number of subgraphs in the `molecular_graph`s decoding route, which is how many subgraphs would be formed in the process of deleting the last atom/bond in the molecule stepwise until only a single atom is left. Note that this is simply the ...
7e55e4d1a243a9bbb8352b95cd22066006e7060a
659,155
def _remove_extrem_holes(z_lst, end_z, start_z=0): """Remove extrem holes from the list of holes so that we will not interpolate on the extrem slices.""" if start_z in z_lst: while start_z in z_lst: z_lst = z_lst[1:] start_z += 1 if len(z_lst): z_lst.pop(0) ...
fce804c0517dffbb4820b5799ef3aa30e22432d0
659,156
def get_texture_declaration(texture): """Return the GLSL texture declaration.""" declaration = "uniform sampler%dD %s;\n" % (texture["ndim"], texture["name"]) return declaration
625dbc7e84949b9bf8bbda6ca86244c681187825
659,157
def bin_coef_efficient(n: int, k: int) -> int: """ C(n, k) = C(n, n-k) # fact therefore, if k > n-k, change k for n-k (for easier calculation) i.e. C(n, k) = n! / (k! * (n-k)!) = [(n) * (n-1) * ... (n-k+1) / k!] => k terms above and k terms below Time Complexity: O(k) Space Complexity: O(...
09508012cc6f35320d5c8b27168f76f65e71a4a6
659,158
def ec2_inst_is_vpc(inst): """ Is this EC2 instance a VPC instance? """ return (inst.vpc_id is not None)
a7c53f0aea53e78ebcebba5023a85aeed0a56afb
659,159
def read_number_of_agents(dpomdp_file): """Returns the number of agents in a Dec-POMDP problem Keyword arguments: dpomdp_file -- path to problem file in the .dpomdp format """ with open(dpomdp_file) as file: for line in file: if line.startswith('agents:'): return int(line.split(':')[1]) raise V...
13f91b6f00b290783898928f287bcccb0e2f4b69
659,160
import io def _has_fileno(stream): """Returns whether the stream object seems to have a working fileno() Tells whether _redirect_stderr is likely to work. Parameters ---------- stream : IO stream object Returns ------- has_fileno : bool True if stream.fileno() exists and doe...
a725119eb2cce135e33adab11854f9da5e8af64d
659,161
import subprocess import sys def run_bash(cmd, raise_on_err=True, raise_on_warning=False, versbose=True, return_exist_code=False, err_ind_by_exitcode=False): """ This function takes Bash commands and return their stdout Returns: string (stdout) :type cmd: string """ p = subprocess.Popen(cmd, shell...
1c13cfdec764ee5864a0cb9ba6604e03f447715f
659,162
import re import argparse def valid_url(url): """Validate url. :rtype: str :return: url :param str url: package homepage url. """ regex = re.compile( r'^(?:http)s?://' r'(?:(?:[A-Z0-9](?:[A-Z0-9-]{0,61}[A-Z0-9])?\.)+' r'(?:[A-Z]{2,6}\.?|[A-Z0-9-]{2,}\.?))' r'(...
14878702a1cce4ca00aa9934a2fd73a8ff843255
659,163
import logging def loggingDecorator(func): """记录日志的装饰器""" def wrapperLogging(*args, **kwargs): logging.info("开始执行 %s()... " % func.__name__) func(*args, **kwargs) logging.info("%s() 执行完成... " % func.__name__) return wrapperLogging
bfdfbaa3f29ad4b9a5bdb193070685231729f62d
659,164
import re def extract_keybinds(contents): """extract each commented keybind block to an array Args: contents (string): contents of the i3 config Returns: array: array of tuples containing the matched commented keybind block """ return re.findall(r'((#(((?!bindsym)(?!exec).)*?)\n)...
c4251ba802c194abc422bc83acf7759aa921610b
659,166