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def get_rows_compl(me, typeM, typeE): """Get complicating constraints: i.e., mixed M and E fluxes""" def is_complicating(met): rtypes = [type(r) for r in met.reactions] hasM = sum( [(ri in typeM) for ri in rtypes ] ) > 0 hasE = sum( [(ri in typeE) for ri in rtypes] ) > 0 hasME =...
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def rotateFromExifMetadata(image): """ This function autorotates a picture """ try: exif = image._getexif() except AttributeError as e: print("Could not get exif - Bad image!") return image (width, height) = image.size if not exif: if width > height: return image.rotate(90) else: ...
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def decoder(input_string): """ decode the input into numbers Parameters ---------- input_string : string String to convert to code points Returns ------- output_string : numbers into list """ output =[] temp = input_string for i in range(len(temp)):...
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def getYInside(x): """ Funcion para generar una parabola con el embone hacia arriba ^ :param x: valor de x :return: valor de y """ return -5*(x**2) + 5*x - 1
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import math def linear_regression_tortuosity(x, y, sampling_size=6, retry=True): """ This method calculates a tortuosity measure by estimating a line that start and ends with the first and last points of the given curve, then samples a number of pixels from the given line and calculates its determinat...
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def count_user(data_list): """ Function count the users. Args: data_list: The data list that is doing to be iterable. Returns: A list with the count value of each user type. """ customer = 0 subscriber = 0 for i in range(len(data_list)): if data_list[i][5] ...
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import copy def getAllBuildersWithControl(builders,control_objects): """ Returns an array of DynamicSimulationBuilders (with len(builder)*len(control) elements) that have all the properties as the ones supplied in the builders array, but with control_bojects specified in the control array """ res = []...
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import base64 def encode_access_id(token_str: str, replica: str) -> str: """ Encode a given token as an access ID using URL-safe base64 without padding. Standard base64 pads the result with equal signs (`=`). Those would need to be URL-encoded when used in the query portion of a URL: >>> base64....
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def expand_suggested_responses(instrument, lookups, *responses): """ Maps any {'_suggested_response': pk} values to the SuggestedResponse by that id, as long as it is present in the ``lookups`` dict. """ values = [] for response in responses: data = response # Assume raw passthrough by...
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def hash_filter(first_hits, second_hits): """ This function filters the second network using dictionaries :param first_hits: Network from first query :param second_hits: Network from second query :return: filtered network """ protein_filtered = {} # Now filter # Protein for in...
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import fsspec from typing import Optional from typing import Set from typing import List def _get_objects_in_path( fs: fsspec.AbstractFileSystem, path: str, target_type: Optional[str] = None, extensions: Optional[Set[str]] = None ) -> List[str]: """Get all objects of a specific typ...
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def get_property_by_name(pif, name): """Get a property by name""" return next((x for x in pif.properties if x.name == name), None)
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from typing import List from typing import Tuple def return_to_previous_meeting( student_names: List[str], individual_seconds: int, previous_individual_seconds: int ) -> Tuple[List[str], int, int]: """Rotates the queue backwards. Parameters ---------- student_names : List[str] The list of...
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import hashlib def check_if_infected(hash_value, file): """ Checks if the previously infected file's hash value matches its current hash (namely checks if infected file is changed later) """ real_hash = hashlib.sha256(file.encode()) return real_hash.hexdigest() == hash_value
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def pathcombine(path1, path2): """Joins two paths together. This is faster than `pathjoin`, but only works when the second path is relative, and there are no backreferences in either path. >>> pathcombine("foo/bar", "baz") 'foo/bar/baz' """ if not path1: return path2.lstrip() ...
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def _scale(column, new_range): """ Scale list of values to a given range (the original range is assumed to be [min(column), max(column)]). """ old_range = (column.min(), column.max()) return (((column - old_range[0]) * (new_range[1] - new_range[0])) / (old_range[1] - old_range[0])) + new_range[0]
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def knights(): """ Returns a string "Knights who say Ni!". >>> knights() 'Knights who say Ni!' """ return 'Knights who say Ni!'
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import argparse def get_inputs_arg(): """Creates Command line arguments""" parser = argparse.ArgumentParser(add_help=True) parser.add_argument('--data_dir', type=str, default='flowers', help='Path images folder') parser.add_argument('--save_dir', type=str, default='checkpoin...
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import argparse import os import requests def parse_arguments(): """ Takes arguments from the command line and checks whether they have been parsed correctly """ parser = argparse.ArgumentParser() parser.add_argument( "-m", "--model", type=str, help="Path to YA...
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def dominance(counts): """Dominance = 1 - Simpson's index, sum of squares of probs. Briefly, gives probability that two species sampled are the same.""" freqs = counts/float(counts.sum()) return (freqs*freqs).sum()
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def _split_series_episode(title): """Return the series and the episode titles; if this is not a series' episode, the returned series title is empty. This function recognize two different styles: "The Series" An Episode (2005) "The Series" (2004) {An Episode (2005) (#season.episode)}""" s...
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from typing import Iterable from functools import reduce import operator def prod(iterable: Iterable) -> float: """Returns the product of the elements of an iterable.""" return reduce(operator.mul, iterable, 1)
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def drop_table(table: str) -> str: """ drop_table is used for dropping a table :param table: the table to drop :return: """ sql_query = f"DROP TABLE {table};" return sql_query
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def division_euclidienne_dichotomique(a, b): """Renvoie le quotient q et le reste r de la division euclidienne de a par b""" n = 0 while 2 ** n * b <= a: n += 1 inf = 2 ** (n - 1) sup = 2 ** n for i in range(1, n): mid = (inf + sup) / 2 if mid * b <= a: inf =...
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import argparse def parse_args(): """ """ parser = argparse.ArgumentParser(description='PyTorch QAT') parser.add_argument('--tl','--transfer_learning',action='store_true',help='used to map weights correctly') parser.add_argument('--iter',default=300, type=int, help='no of iterations') parser.a...
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import re def sanitize_id(string): """Remove characters from a string which would be invalid in XML identifiers Parameters ---------- string : str Returns ------- str """ string = re.sub(r"\s", '_', string) string = re.sub(r"\\|/", '', string) return string
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from typing import List def chunk_to_end(l:List, n:int)-> List[List]: """ Break list in to evenly sized chunks :param n: Size of batches """ rl = list(reversed(l)) chunks = [ list(reversed(rl[x:x + n])) for x in range(0, len(rl), n) ] return list(reversed(chunks[:-1]))
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def subMatrix(A,B): """subtraction two matrices""" return [[A[i][j] - B[i][j] for j in range(len(A))] for i in range(len(B))]
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def get_control_interval_mask(control_dates, time_interval): """Returns a mask for control dates that affect the given time interval.""" mask_prehistory = control_dates <= time_interval[0] if not any(mask_prehistory): raise ValueError('First control date {} is later than the beginning of time interv...
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import string import itertools def euler30(): """Solution for problem 30.""" # sum(fifth(digits)) = n # nb_digits * fifth(0) < sum(fifth(digits)) <= nb_digits * fifth(base - 1) # base ^ (nb_digits - 1) <= n < base ^ nb_digits # => base ^ (nb_digits - 1) <= nb_digits * fifth(base - 1) # with ba...
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import copy def prepareGoogleNet_Food101_ECOC_loss(model_wrapper): """ Prepares the GoogleNet model for inserting an ECOC structure after removing the last part of the net :param model_wrapper: :return: """ # Remove all last layers (from 'inception_5a' included) layers_to_delete = ['incept...
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def mini_help(n): """ => Exibe a docstring do comando que recebe :param n: o comando a ser pesquisado :return: a ajuda interactiva (help) do parametro """ r = len('Acedendo ao manual do comando')+len(n)+6 #este trecho print('~'*r) #de codigo print(f' Acedendo ao manual do comando {n}') #pode ser print...
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def function2(): """ Return 2 """ return 2
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import random import string def random_mutate(word, mutations, no_punct, alpha): """Randomly mutate the word with 'mutations' frequency. If no_punct is true, leave punctuation unaltered.""" letters = list(word) # split the current word in a list num_mutations = round(mutations * len(letters)) ...
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def get_gem_group(sample_def): """ Get the GEM group from a sample def. Defaults to 1 if the gem_group is specified as None. Args: sample_def (dict): Sample def Returns: int: GEM group """ gg = sample_def['gem_group'] or 1 return int(gg)
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def rinse(M, d=1e-14): """ This function removes any entries in a list or array that are closer to zero than d is. It is used in the gauss function to avoid division by near-zero values. By default d is set to be equal to 10^-14. """ m = len(M) if type(M[0]) == list: n = len(M[0...
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def clean_space(string): """ Replace underscores by spaces, replace non-breaking space by normal space, remove exotic whitespace, normalize duplicate spaces, trim whitespace (any char <= U+0020) from start and end. Method adapted from org.dbpedia.extraction.util.WikiUtil class (extraction-framework ...
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def get_figure_height(width, ratio=0.6): """Compute and return figure height with a ratio.""" return width*ratio
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import re def process_content(string): """ Process the content string data, if the string is nan (empty), replace it by '' else check if '#*;' in string, replace it by right symbol, and if the meaning of '&#*;' is unknow, return the wrong info Paras: string: the context ...
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def split_caps(key): """ splits a string using capital letters as separator eg split_caps('ExampleString') returns ['Example', 'String'] """ b = False lst = [] x = 0 for i, ch in enumerate(key): if i > 0 and ch.isupper(): temp = key[x:i] if b and not temp...
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def _as_float_string(f): """Takes a floating point number and returns it as a formatted string""" return "%.2f" % f if f is not None else 'nil'
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def extract_keywords(icss): """Helper function Parameters ---------- icss : string comma-separated string Returns ------- kws : list of string set of keywords paramdict : dict dict of {parameterized_keyword: parameter_valu...
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def ip_net_namespace_mode(function): """Decorator: get clissh_instance for class methods. """ def wrapper(*args, **kwargs): """Add "ip netns exec " prefix to all commands to forward them into network namespace. """ if "command" in kwargs: command_line = kwargs.pop("com...
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import unittest import os def suite(): """Return a list of tests""" loader = unittest.TestLoader() directory = os.path.join(os.path.dirname(os.path.abspath(__file__)), '..') return loader.discover(directory, 'test_*.py')
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import os def simplify_path(path: str) -> str: """Simplify a path by removing ../""" if path.find('..') < 0: return path separator = os.sep keep_folders = path.split(separator) found = True while found: pos = -1 folders = keep_folders for i in range(len(folde...
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def _static(job, t): """Static priority assignment according to task IDs (smaller is higher priority)""" if job.task.id is None: raise ValueError(f"Cannot use task ID {job.task.id} as priority!") return job.task.id
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def remove_mean_values(points): """Calculate integer mean values of the 2D array and removing it from the data. :param points: The points defining the ellipse. :type points: :return: Points, mean X integer coordinate, mean Y integer coordinate :rtype: tuple """ x_mean = int(points[:, 0].me...
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def hello_world(): """Hello world function""" return 'Hello World! Testing deployer(again)'
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def CreateFeedItemAddOperation(name, price, date, adgroup_id, ad_customizer_feed): """Creates a FeedItemOperation. The generated FeedItemOperation will create a FeedItem with the specified values and AdGroupTargeting when sent to FeedItemService.mutate. Args: name: the value...
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def range_limit(u, range=[-5, 5]): """ Returns a logical vector that is True where the values of `u` are outside of `range`. Parameters ---------- u : xarray.DataArray The timeseries data to clean. range : list Min and max magnitudes beyond which are masked Returns --...
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def read_data(filename="data/input4.data"): """ Load the raw datafile """ with open(filename) as f: lines = f.read().splitlines() return lines
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def unify_strings(token_list): """Unify string literals into a single token""" tokens_new = [] inside_string = False for token in token_list: # Single-word string if token.count('"') == 2: tokens_new.append(token) continue # Multi-word string if...
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import numpy def framing(sig, win_size, win_shift=1, context=(0, 0), pad='zeros'): """ :param sig: input signal, can be mono or multi dimensional :param win_size: size of the window in term of samples :param win_shift: shift of the sliding window in terme of samples :param context: tuple of left a...
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def expansionhunter_expected(): """:return: Returns dictionary with expected results for ExpansionHunter - NORMAL.""" return { "AR": "Normal - repeat AR observed: 24/25. Normal range: 9 - 35. Expansion range: 38 - 62.", "FMR1": ( "Normal - repeat FMR1 observed: 17/17. " "...
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def identity(x): """ pickable equivalent of lambda x: x """ return x
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def get_posted_files(db): """ Extracts a set of image file names for persisted tweets. The application's expected image file format is ``an-image-name-without-the-path.png``. So, it does not include the path to the image file in the saved string. Args: db: TinyDB instance. Returns: ...
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def is_descendant_of(node1, node2, include_self=False): """ Return whether the first argument is a descendant of the second argument. If using this tag to determine whether menu entries should be active or not ``include_self=True`` should be specified. """ # Strings mean that either node1 or no...
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def calculer_temps_segment(distance, v, deriver_v, limite, pas): """ Renvoie le temps et la vitesse après le parcours d'un segment. distance : flottant, distance à parcourir v : flottant, vitesse intiale deriver_v : fonction, renvoie la dérivée de la vitesse limite : flottant, limit...
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from typing import List def run(expressions: List): """Run a sequence of commands, or evaluate a sequence of expressions.""" result = None for expression in expressions: result = eval(expression) return result
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import subprocess def list_committed_files(): """List all files which are commited in the repo located in directory""" command = "git ls-tree --full-tree --name-only -r HEAD".split(" ") output = subprocess.check_output(command, universal_newlines=True) return [line for line in output.split("\n") i...
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from typing import Sequence from typing import List def _purge_tags(tags: Sequence[str]) -> List[str]: """ Purge tags. Remove duplicate and sort tags :param tags: A sequence of tags :return: purged tags """ return sorted(set({key.strip().lower() for key in tags if key}))
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def file_2_str(fpath, decode=None): """ 从文件读取字符串 """ with open(fpath, 'rb') as f: context = f.read() if decode is not None: context = context.decode(decode, 'ignore') return context
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def select_from_dict(original_dict, allowed_keys): """ >>> select_from_dict({"spam": 1, "eggs": 2, "pizza": 3}, allowed_keys=("pizza", "spam")) {'spam': 1, 'pizza': 3} >>> select_from_dict({"spam": 1, "eggs": 2, "pizza": 3}, allowed_keys=()) {'spam': 1, 'eggs': 2, 'pizza': 3} """ if len(allo...
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def prepare_inputs(data): """ change the channel dimension for data Args: data (tensor): (num_examples_per_class, height, width, channels) Returns: data (tensor): (num_examples_per_class, channels, height, width) """ if type(data) == list: return data if l...
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def poly2str(coeffs, powcoeffs, var='s', eps = None): """Converts a Fractional Order transfer function polynomial to a string Output: String Arguments: Coefficients, Power Coefficients and string value of Transform 'z' or 's'[Optional]. 's' is default, 'eps'[Optional] = Number of De...
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def path_emission(iterable, emission=0): """Construct a common emission from an iterable of :class:`Material` objects Parameters ---------- iterable: list_like List of :class:`Material` objects emission: scalar or :class:`~lentil.radiometry.Spectrum`, optional Emission collected up...
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def comp_surface_magnets(self): """Compute the surface of the magnets (if any) Parameters ---------- self : HoleM53 A HoleM53 object Returns ------- Smag: float Surface of the Magnets [m**2] """ S = 0 if self.magnet_0: S += self.H2 * self.W3 if sel...
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def data_map(): """A data_map for testing PDProcessor.""" return [ ('string', 'String', 'format_uppercase'), ('float', 'Float', None), ('integer', 'Integer', None), ('date', 'Date', 'format_date') ]
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def timeout_from_marker(marker): """Return None or the value of the timeout.""" timeout = None if marker is not None: if len(marker.args) == 1 and len(marker.kwargs) == 0: timeout = marker.args[0] elif len(marker.args) == 0 and len(marker.kwargs) == 1 and "timeout" in marker.kwa...
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def get_color(score: float) -> str: """Return a colour reference from a pylint score""" colors = { "brightgreen": "#4c1", "green": "#97CA00", "yellow": "#dfb317", "yellowgreen": "#a4a61d", "orange": "#fe7d37", "red": "#e05d44", "bloodred": "#ff0000", ...
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def get_romb_offset(rom_slot, rom_split, rom_bases, roms_file=False): """ Get ROM slot offset in SPI Flash or ROMS.ZX1 file :param rom_slot: ROM slot index :param rom_split: Slot number where rom binary data is split in two :param rom_bases: Offsets for ROM binary data :param roms_file: If True,...
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def add(a, b): """ A function that adds two integers :param a: (int) The first integer :param b: (int) The second integer :return: (int) The sum of a and b :raises: AttributeError, if a and b are not integers """ if not isinstance(a, int) or not isinstance(b, int): raise Attribu...
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def annotate(the_type, the_value): """ This method is a pass-through function that returns `the_value`, used to hint TorchScript compiler the type of `the_value`. It is a no-op when running outside of TorchScript. Though TorchScript can infer correct type for most Python expressions, there are some cas...
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def filter_reserved(res): """ Filter reserved IP. :param res: :return: """ try: if res['data']['state'] == 'RESERVED': res['status'] = 'FAIL' res['message'] = 'Host records cannot be added if ip address is reserved.' return res except (TypeError, KeyEr...
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def clean_data(df,categories): """ This function cleans the dataframes df and categories input: df, categories outputs:- categories: dataframe after being worked conveniently to represent the categories - df: dataframe after being conveniently cleaned """ categories =categories[...
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def internal_gains ( metabolic_gains, lighting_gains, appliances_gains, cooking_gains, pumps_and_fans_gains, losses, water_heating_gains ): """Calculates Internal Gains, Section 5. :param metabolic_gains: Calculated using table 5. See (66...
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def number_of_tokens(): """ Number of tokens pre-registered in the test Registry. """ return 1
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def cron_trigger_dict(ts_epoch, ts_2_epoch): """A cron trigger as a dictionary.""" return { "year": "2020", "month": "*/1", "day": "*/1", "week": "*/1", "day_of_week": "*/1", "hour": "*/1", "minute": "*/1", "second": "*/1", "start_date": ts...
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def lighten(color, shades=1): """ Lightens a given color by a number of shades. Args: color(tuple): the RGBA color. shades(int): the number of shades to add to the color value. Return: The lightened color. """ r, g, b, a = color return min(r + shades, 255), min(g + ...
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def repeated_letter(word: str) -> dict: """ Check if a word has repeated letters. Args: word (str): Word to check. Returns: dict: { 'A':{1,2}, 'B':{0,3}, etc. } # Dictionary of repeated letters and the indices where they are repeated. """...
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def eval_one_max(traj, individual): """The fitness function""" traj.f_add_result('$set.$.individual', list(individual)) fitness = sum(individual) traj.f_add_result('$set.$.fitness', fitness) traj.f_store() # We switched off automatic storing, so we need to store manually return (fitness,)
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def with_error_on_no_name(): """WithErrorOnNoName some ingesters, when creating a Writer, do not return an error if the descriptor does not have a valid name on the descriptor. Passing WithErrorOnNoName tells the writer to return an error instead of passing the data to a nil writer. """ def func(opt...
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def get_graph_no_active_edges(graph): """ Get a molecular graph without the active edges Arguments: graph (nx.Graph): Returns: (nx.Graph): """ graph_no_ae = graph.copy() active_edges = [edge for edge in graph.edges if graph.edges[edge]['active'] is True...
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def fraction_justified_and_finalized(validator): """Compute the fraction of justified and finalized checkpoints in the main chain. From the genesis block to the highest justified checkpoint, count the fraction of checkpoints in each state. """ # Get the main chain checkpoint = validator.highest...
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def split_virtual_offset(virtual_offset): """Divides a 64-bit BGZF virtual offset into block start & within block offsets. >>> (100000, 0) == split_virtual_offset(6553600000) True >>> (100000, 10) == split_virtual_offset(6553600010) True """ coffset = virtual_offset >> 16 uoffset = vi...
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def _enum_to_index(enum, key): """Enums, by default, are not int-comparable, so use an ad-hoc mapping of enum key to its int position""" return list(enum).index(key)
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def log2(x): """ [Definition] 对x做以2为低的对数运算 [Category] 元素级 """ # if ~np.array((x > 0)).all(): # raise OpException('NANs exist in function log2()!') return 'log2(%s)' %x
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def map_headers(wb_obj): """ Returns a nested dictionary with the location and name of each column header """ sheets = wb_obj.sheetnames return_value = {} ignore_this = ["Main", "Commands", "Settings", "Errors"] for sheet in sheets: if sheet not in ignore_this: row = ...
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from pathlib import Path import sqlite3 import warnings def check_inputs(options): """ Checks the input options provided by the user and makes sure that they are valid. Throw an error with descriptive help message if not.""" # Make sure that the input database exists! database = options.database ...
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def parse_edges_and_weights( data: str, start_string: str = "Distance", end_string: str = "# Source", ) -> list: """Return a list of edges with weights. This function will parse through the read-in input data between strings ''start_string'' and ''end_string'' to return the filtered text in-between...
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def _kappamstar(kappa, m, xi): """ Computes maximized cumulant of order m Parameters ----- kappa : list The first two cumulants of the data xi : int The :math:`\\xi` for which is computed the p value of :math:`H_0` m : float The order of the cumulant Returns ...
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def safe_get(dictionary, key): """ Safely get value from dictionary """ if key in dictionary: return dictionary[key] return None
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def vectorfield(w, t, par): """ *Problem 8-05 Part (a) {Elements of Chemical Reaction Engineering, Fogler (5th Ed.)} Arguments: w : vector of the state variables: w = [Ca,Cb] t : time par : vector of the parameters: par = [k1,k2] ...
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def degree_centrality(graph): """ Returns a dictionary with the degree centrality of all the nodes in a given graph network. A node’s degree centrality is the number of links that lead into or out of the node. """ nodes = set(graph.nodes) s = 1.0 / (len(nodes) - 1.0) centrality = dict((n, d ...
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def extract_task(spark): """Load data from csv file format. #param spark: Spark session object. #return: Spark Dataframe. """ market_df = spark.read.csv('/user/xxxx/userCryptoStorage/valid_market*', header=True) return market_df
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def Remove_Caps(sentence): """ Converts all capital letters in "data" into small caps """ return sentence.lower()
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import os def _get_directory_content( directory_path: str, allowed_dot: bool, validation_method): """ :param directory_path: Directory path. :param validation_method: Validation method. :param allowed_dot: If True the list will contain dot files/directories. :return: Lis...
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import random def random_symbol(num: int = 1, seed=None) -> list: """ Returns a list of random symbols from the following set: ['!', '@', '#', '$', '%', '^', '&, '*' ,'(', ')', '-', '_', '=', '+', '`', '~] :param num: Number of symbols to return :type num: int :param seed: Random seed (Opti...
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def W_to_MJ(W): """単位換算 W/m2 => MJ/m2・h Args: W(float):日射量等(W/m2) Returns: MJ(float):日射量等(MJ/m2・h) """ return W * 3600 * 10**-6
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def categorize_grades(grades): """ :type grades: iterable of librus_tricks.classes.SynergiaGrade """ grades_dict = dict() for grade in grades: if grade.subject not in grades_dict.keys(): grades_dict[grade.subject] = [] grades_dict[grade.subject].append( grad...
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