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def get(client, name: str, namespace: str = "default"): """Get a CronJob if it does exist, if it doesn't, return None. :batch_v1_api: The Batch V1 API object. :name: The name of the CronJob. :namespace: The namespace of the CronJob. :returns: CronJob if it does exist, None if it doesn't exist. ...
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from typing import List def octet_list_to_int(octet_list: List[int]) -> int: """ Convert octet list to integer. :param octet_list: Octet list to convert. :returns: Converted integer. """ result = 0 for octet in octet_list: result <<= 8 result += octet return result
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def get_host_replica(volume, host_id): """ Get the replica of the volume that is running on the test host. Trigger a failed assertion if it can't be found. :param volume: The volume to get the replica from. :param host_id: The ID of the test host. :return: The replica hosted on the test host. ...
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def delete_border_detections(chip_detections, chip_w, border_delete_amount): """Deletes detections near borders. This is to make merging of several slided inference patches easier. The function is implemented vectorized and is therefore lightning fast. Args: chip_detections (list): List of np.array...
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import io import contextlib import re def clean_mgs(func, sep='\n\n'): """ first captures what's printed by a function and then cleans up special command-line stuff (ie. colors) """ f = io.StringIO() with contextlib.redirect_stdout(f): func() out = f.getvalue() ansi_escape...
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def mosaic_name(pairs_param): """ Generates a filename for the mosaic. Concatenating the pair names would be very long so instead we combine the last four numbers of the product_id's. """ return ''.join( [ f'{pair["left"][-5:-1]}-{pair["right"][-5:-1]}_' for pair in p...
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import re def deserialize(stream): """ Convert stdout from running binderThroughputTest into a list of [avg_latency, iters] pair. """ result = {} lines = stream.split("\n") for l in lines: if "average" in l: latencies = re.findall("\d+\.\d+|\d+", l) result["...
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def add(x, y): """ Returns x+y Parameter x: The first number to add Precondition: x is an int or float Parameter y: The second number to add Precondition: y is an int or float """ return x+y
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def strip_uri_host_and_path(concept_uri): """remotes the host and path from a URI, returning only the final resource name """ if concept_uri is None: return None rightmost_slash_position = concept_uri.rfind('/') rightmost_colon_position = concept_uri.rfind(':') simplified_start = max(0, ...
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def get_intervals(label, length): """ turns label into intervals with min and max starts aswell as their durations """ temp = [] for i, val in enumerate(label): min_start = sum(label[:i]) + len(label[:i]) duration = label[i] if len(label) == 1: max_start = len...
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def extra(request): """ Add information to the json response """ return {'one': 123}
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def parseDockerAppliance(appliance): """ Takes string describing a docker image and returns the parsed registry, image reference, and tag for that image. Example: "quay.io/ucsc_cgl/toil:latest" Should return: "quay.io", "ucsc_cgl/toil", "latest" If a registry is not defined, the default is: "d...
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def get_dadvs(words_li,pos_li,j): """ 获取方位状语 """ d='' while pos_li[j]!='p' and words_li[j]!=','and j>0: d=words_li[j]+d j-=1 if words_li[j]!=',': d=words_li[j]+d return d
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def update_kwargs(kwargs, **params): """params override kwargs""" return dict(kwargs, **params)
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from typing import Counter def getExternalAndInnerIOToDirAndWidth(slot_name_2_io_name_2_dir_and_width): """ when we wrap up multiple slots, some slot io become internal connection other IOs remain to be the IO of the wrapper """ # io name -> dir + width (in string) list_of_io_name_2_dir_width_pair = slot...
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def scramble(base, hexa): """ Scramble given base and hex """ result = bytearray() for c in hexa: result.append(base.index(c)) return bytes(result)
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def getValidOption(): """ Prompts a user for an option until a valid open is entered and then returns """ while(1): try: option = int(input("Enter an option: ")) except: print("Please enter an integer") else: if option >= 0: return option else: print("Option must be an interger of zero...
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def getFilename(f): """Get the filename from an open file handle or filename string.""" if isinstance(f, str): return f return f.name
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import re def version2tuple(ver: str) -> tuple: """Convert version to numeric tuple""" if re.match(r"\d+\.\d+\.\d+$", ver) is None: raise ValueError(r"Version must be well formed: \d+\.\d+\.\d+") return tuple([int(val) for val in ver.split(".")])
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from typing import Tuple def move_ferry_with(instructions: list) -> Tuple[int, int]: """Navigate ferry according to navigation instructions.""" direction = 0 moves = {"N": 0, "S": 0, "E": 0, "W": 0} for action, value in instructions: if action == "F": moves[["E", "N", "W", "S"][dir...
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import uuid from datetime import datetime import os def upload_directory_path(instance, filename): """ Determine directory path for uploaded files at runtime. """ ext = filename.split('.')[-1] filename = "%s.%s" % (uuid.uuid4(), ext) today = datetime.now().strftime('%Y-%m-%d') return os.pa...
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import json def compact_json(r, sort_keys=False): """ JSON as small as we can make it, with UTF-8 """ return json.dumps(r, ensure_ascii=False, separators=(',', ':'), sort_keys=sort_keys).encode('utf-8')
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def coordinates(location): """Return a (lat, lng) tuple from an OpenCage location result location: a dict (from opencage.geocoder.OpenCageGeocode.geocode) """ geometry = location['geometry'] return geometry['lat'], geometry['lng']
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def m_seq_inx0_sort_in_list(seq, args=False): """ 对列表中单个列表按第一个元素排序,返回新的列表 :param seq: 列表形成的列表 :param args: 是否倒序 True or False :return: 排序后的列表 example: :seq [['20160708', 'gyf'], ['20180505', 'zme'], ['20170101', 'zkp']] :args True ...
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def cubes(l=[1, 2, 3]): """ task 0.5.29 implement one line procedure taking list of integers 'l' output should be a list of numbers whose 'i'th element is the cube of the 'i'th element of 'l' e.g. input[1, 2, 3] output[1, 8, 27] def cubes(l=[1, 2, 3]): return [i ** 3 for i in l] """ ...
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import re def validate_date(date: str) -> dict: """ Validate provided date data. Desired format: YYYY or YYYY-MM (2021 or 2021-12). """ # regex patters rp_year_month = re.compile('^(20[0-9]{2})-((0[1-9])|(1[0-2]))$') rp_year = re.compile('^(20[0-9]{2})$') # Match year-month object ...
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import requests def has_reads(biosample): """ Query INSDC reads for a <biosample>. Return True or False. """ warehouse = 'https://www.ebi.ac.uk/ena/data/warehouse' url = ("%s/filereport?accession=%s&result=read_run" % (warehouse, biosample)) try: response = requests.get...
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def has_material(obj, name): """check if obj has a material with name""" return name in obj.data.materials.keys()
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def compute_ious(tracks, candidates, backward): """ Returns: ious (dict): Map track.id to list of ious for each candidate detection in new_candidates. """ ious = {} for track in tracks: if not candidates[track.id]: continue ious[track.id] = [ ...
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import sys def get_dependency(dep): """ safe function to import a module programmatically :return: module or None (if not importable) """ try: __import__(dep) return sys.modules[dep] except ImportError: # pragma: no cover return None
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from functools import reduce def fuseDotAl(dotAl): """Given input [ (2, "3"), (4, "5"), (2,"6") ], d will be a dict { 2: {"3","6"}, 4: {"5"} } and return value { 2: {"3 \n 6"}, 4: {"5"} } """ d = dict([(x, {y for (z,y) in dotAl if z==x}) for (x,w) in dotAl]) # sets of y for the same x ...
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def outline_az_sub(sub_index, sub, tenant): """Return a summary of an Azure subscription for logging purpose. Arguments: sub_index (int): Subscription index. sub (Subscription): Azure subscription model object. tenant (str): Azure Tenant ID. Returns: str: Return a string th...
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def lowercase_set(sequence): """ Create a set from sequence, with all entries converted to lower case. """ return set((x.lower() for x in sequence))
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import requests def _get_token(ZC, username, password): """Gets the client's token using a username and password.""" url = '{}/oauth/token/'.format(ZC.HOME) data = {'username': username, 'password': password, 'noexpire': True} r = requests.post(url, json=data) if r.status_code != 200: r...
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import os def format_uniform_path(path): """format the path to a new path which seperated by os.sep. """ path = path.replace("//", os.sep) path = path.replace("/", os.sep) path = path.replace("\\", os.sep) return path
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def error_general_details(traceback_str: str) -> str: """ Error message DM'ed to the user after a general error with the traceback associated with it. :param traceback_str: The formatted traceback. :returns: the formatted message. """ return f"Here is some more info on the error I encounte...
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import csv def get_genes(path): """Returns a list of genes from common results tables. Assumes the genes are in the first column.""" with open(path) as full_gene_list: full_gene_list = csv.reader(full_gene_list) gene_list = [row[0] for row in full_gene_list] del gene_list[0] # Remove ...
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import os def mass_delete(directory,regex,topdown=True): """deletes all files matching regex in directory and all its subdirectories""" deleteList = [] for root, _, files in os.walk(directory, topdown=topdown): for name in files: if regex in name: deleteList.append(name) os.remove(os.path.join(root, n...
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def _validator(validator): """ Validator that is tightly coupled to the implementation of the classes here. This expects that the object has a ._tls property which is of type _DictStack. """ name = validator.__name__ doc = validator.__doc__ def fget(self): return self._tl...
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def pretty_bytes(b): """ Format a value of bytes to something sensible. """ if b >= 10 * (1024**3): # 10 GiB return '%0.0f GiB' % (float(b) / (1024**3)) elif b >= (1024**3): # 1 GiB return '%0.1f GiB' % (float(b) / (1024**3)) elif b >= 10 * (1024**2): # 10 MiB return '%0.0f MiB' % (float(b) / (1024**2)) e...
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def path_name_to_name(path_name): """ :param path_name: :return: """ return path_name.replace("\\\\", "\\") \ .replace(r"\.", ".", ) \ .replace(r"\$", "$") \ .replace(r"\|", "|") \ .replace(r"\[", "[") \ ...
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from typing import List def min_last_period(prev_vals: List[float], period: int) -> float: """ The minimum mobility estimate observed over the preceding days. """ last_n_values = min(len(prev_vals), period) return min(prev_vals[-last_n_values:])
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import logging def mask_sanity_fail(mask, shape, description): """ Sanity check on training masks; shape needs to match. description affects the logging, on failure. """ if mask is None: logging.warn("{} : mask is None".format(description)) return True if mask.shape != shape: ...
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def get_error_score(y_true, y_predicted): """ Error score calculation for classification. Checks if the labels correspond and gives a score. An error score of 1 means that everything is falsly predicted. An error score of 0 means that everything is correctly predicted. Inputs: y...
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def every(y): """ Returns all values (sequences) of y """ return y
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import hashlib def get_consts(method): """ Create hash object and its integer upper bound. """ hasher = getattr(hashlib, method) max_plus_one = 2 ** (hasher().digest_size * 8) return hasher, max_plus_one
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def get_cell_ids(widget, filter_function): """ :param qmxgraph.widget.QmxGraph widget: The widget used to display the graph. :param str filter_function: A javascript function used to filter the cells. :rtype: list[str] """ cells_ids = widget.inner_web_view().eval_js('''(function(...
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import os def _GetName(item): """Returns name of the C++ variable to use for the binary file data.""" return os.path.basename(item['path']).replace('.', '_').replace('$', '_')
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def remove_by_index(l, index): """removes element at index position from indexed sequence l and returns the result as new object""" return l[:index] + l[index + 1:]
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import warnings def reduce_function(op_func, input_tensor, axis=None, keepdims=None, name=None, reduction_indices=None): """ This function used to be needed to support tf 1.4 and early, but support for tf 1.4 and earlier is now dropped. :param op_func: expects the function to handle eg: tf.r...
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import re def installed_package_name(ctx, pkg_conf): """ :param: ctx :param: pkg_conf such as bootflash:/Image/packages.conf :return: the installed package name """ output = ctx.send('dir ' + pkg_conf) if not output: ctx.error("dir {} failed".format(pkg_conf)) return None ...
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def resdiv_r2(Vin, Vout, R1): """ Calculate the exact value of R1 with R2 given. """ return R1 / (Vin/Vout - 1)
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def get_file_changes(commit, prev_commit): """ Perform a diff between two commit objects and extract the changed files from it. Args: commit(:class:`~git.objects.commit.Commit`): Commit object for commit with file changes prev_commit(:class:`~git.objects.commit.Commit`): Com...
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import csv def loadPathwayInfoFromFile(filename, csv_separator): """ loadPathwayInfoFromFile(): Loads pathway information from given filename (with given CSV separator character) Parameters: - filename: name of file to load pathway information from (string) - csv_separator: CSV sep...
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def _is_higher_better(metric: str) -> bool: """ Args: metric: Returns: >>> _is_higher_better("AUC") True >>> _is_higher_better("auc") False """ higher_better_metrics = { "Recall", "Precision", "F1", "TotalF1", "Accuracy", "AU...
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def is_3des(fnc): """ Is function 3-des? Specific key constrains :param fnc: :return: """ return fnc.lower() == 'triple-des'
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import os import json def find_workflow_dir(): """Finds the installation path for Alfred workflows""" alfred_prefs_path = os.path.join(os.path.expanduser('~'), "Library", "Application Support", "Alfred", "prefs.json") with open(alfred_prefs_path, 'r') as f: alfred_prefs = json.load(f) return o...
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def prod_client(application, production_gateway): """ Prepares application and service for production use and creates new production client :return Api client for application """ version = application.service.proxy.list().configs.latest()['version'] application.service.proxy.list().promote(versi...
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def quicksort(x): """ Describe how you are sorting `x` input x takes in a list, output is a sorted list, numnber of assignments, and number of conditionals choose a pivot point to compare all other values in the list using the pivot point as the last element in the list Use this pivot point ...
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import random import string def random_string(length=25): """Generate a random string.""" return ''.join(random.choice(string.ascii_letters) for i in range(length))
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def get_package_data(): """ Returns a list of all files needed for the installation relative to the 'pyexodus' subfolder. """ return ["RELEASE-VERSION"]
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def find_response_end_token(data): """Find token that indicates the response is over.""" for line in data.splitlines(True): if line.startswith(('OK', 'ACK')) and line.endswith('\n'): return True return False
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def to_bytes(value): """Returns value as bytes""" if isinstance(value, str): return bytes(value, "utf-8") if isinstance(value, bool) or isinstance(value, int): number = int(value) return number.to_bytes((number.bit_length() + 7) // 8, "big", signed=False) return value
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def _deploy_func(func, dataframe, *args): """Deploys a function for the _map_partitions call. Args: dataframe (pandas.DataFrame): The pandas DataFrame for this partition. Returns: A futures object representing the return value of the function provided. """ if len(args) == 0...
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def perc95(chromosomes): """ Returns the 95th percentile value of the given chromosomes. """ values = [] for peaks in chromosomes.values(): for peak in peaks: values.append(peak[3]) values.sort() # Get 95% value return values[int(len(values) * 0.95)]
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def unscale_features_by_num_nodes(datasets_list, scaled_index_list, nodes_num_list): """datasets_list: list of datasets to scale back, e.g., [true_values, predicted_values]; true_values and predicted_values[num_heads][num_samples][num_atoms] """ for dataset in datasets_list: for scaled_index in ...
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def is_square(arr): """ Determines whether an array is square or not. :param ndarray arr: numpy array :return: condition :rtype: bool """ shape = arr.shape if len(shape) == 2 and (shape[0] == shape[1]): return True return False
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import hashlib def string_hash(data: str) -> str: """Given a string, return a hash.""" md5 = hashlib.md5() md5.update(data.encode()) # Note: returning plain integers instead of hex so linters # don't see words and give spelling errors. return str(int.from_bytes(md5.digest(), byteorder='big'))
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import os def get_first_env_var(ev): """ Get the name and value of the first set environment variable :param ev: a list of the environment variable names :type: list[str] | str :return: name and the value of the environment variable :rtype: list """ if not isinstance(ev, list): ...
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import os def get_sql_scripts(): """Get all SQL scripts for database creation.""" return ( os.path.join(os.path.dirname(__file__), 'user.sql'), os.path.join(os.path.dirname(__file__), 'files.sql'), os.path.join(os.path.dirname(__file__), 'hashtags.sql'), os.path.join(os.path.di...
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import asyncio def event_loop(): """Create a session scoped event loop. pytest.asyncio plugin provides a default function scoped event loop which cannot be used as a dependency to session scoped fixtures. """ return asyncio.get_event_loop()
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import os import re def find_in(token, deploy, is_file=True): """ Find token in deploy directory by walking the directory looking for reg-ex :param token: token to search for :param deploy: directory to start with :param is_file: true if looking for file, otherwise false :return: full path to ...
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import argparse def _parse_args(): """Create and parse command line args.""" argparser = argparse.ArgumentParser( description='Import BitBucket issues into Github.') argparser.add_argument( 'file', help='JSON file with BitBucket exported data') argparser.add_argument( '-t', '-...
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def _escape_filename(filename): """Escapes spaces in the given filename, Unix-style.""" return filename.replace(" ", "\\ ")
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def _parse_languages(value): """ Utility function to parse languages. >>> _parse_languages(None) is None True >>> _parse_languages("en") == frozenset(('en',)) True >>> _parse_languages('') '' >>> _parse_languages("en,es") == frozenset(('en', 'es')) ...
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import csv def read_csv(filename): """ Read values from csv filename and returns a list of OrderedDict for each row. """ csv_data = [] with open(filename, 'r') as f: csv_file = csv.DictReader(f) for row in csv_file: csv_data.append(row) return csv_data
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import os def get_config_path(config_dir): """ Args: config_dir(str): Path to dir containing model config file Returns: Path to config file """ config_path = [i for i in os.listdir(config_dir) if i[-4:] == '.ini'][0] return config_path
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def ns2mm(time, velocity): """Return the distance (mm) from signal travel time (ns) and velocity (m/ns). Attributes: time <float>: travel time (ns) of radio signal; velocity <float>: travel velocity (m/ns) of radio signal. """ meters = velocity * time distance = meters * ...
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import torch def mask_to_tight_box_pytorch(mask): """ Return bbox given mask @param mask: a [H x W] torch tensor """ a = torch.nonzero(mask) bbox = torch.min(a[:, 1]), torch.min(a[:, 0]), torch.max(a[:, 1]), torch.max(a[:, 0]) return bbox
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import os def is_docker(): """Returns whether or not Journal is being executed in Docker""" return os.environ.get('JOURNAL_DOCKER', False)
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def str_to_dpid (s): """ Convert a DPID in the canonical string form into a long int. """ if s.lower().startswith("0x"): s = s[2:] s = s.replace("-", "").split("|", 2) a = int(s[0], 16) if a > 0xffFFffFFffFF: b = a >> 48 a &= 0xffFFffFFffFF else: b = 0 if len(s) == 2: b = int(s[1])...
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import json def jsonEncode(input): """ JSON encode. @param (mixed) input @return (str|None) """ try: return json.dumps(input) except: pass
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import requests import click def _update_resource(url, token, data): """ Update a resource using a PATCH request. This function is generic and was designed to unify all the PATCH requests to the Backend. :param url: url to update the resource :param token: user token :param data: dict with t...
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def extended_euclidean(a, b, test=False): """ Extended Euclidean algorithm Given a, b, solve: ax + by = gcd(a, b) Returns x, y, gcd(a, b) Other form, for a prime b: ax mod b = gcd(a, b) = 1 >>> extended_euclidean(3, 5, test=True) 3 * 2 + 5 * -1 = 1 True >>> extended_euclidean(2...
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import subprocess def check_output(cmd): """Convenience implementation of subprocess.check_output.""" proc = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.STDOUT) if proc.wait() != 0: raise Exception('Command failed: %s' % ' '.join(cmd)) return proc.communicate()[0]
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def get_sample_name(sample, delimiter='_', index=0): """ Return the sample name """ return sample.split(delimiter)[index]
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def parse_fields(pr): """ given: https://github.com/<org>/<repo>/pull/<num> """ fields = pr.split("/") org = fields[3] repo = fields[4] num = fields[-1] return (org, repo, num)
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def right_pad (strg, length, ch=' '): """As seen on http://www.halfcooked.com/mt/archives/000640.html""" return (strg + ch * (length - len(strg)))
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def negate_condition(condition): """Negates condition. """ return "not ({0})".format(condition)
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def long_description(): """ Attempt to read README.rst (which is generated during deploy-time), otherwise, use README.md. """ try: return open('README.rst').read() except IOError: return open('README.md').read()
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import os def load_spk2utt(spk2utt_file): """load_spk2utt.""" # returns dictionary { spkid: list of uttids } if not os.path.exists(spk2utt_file): return None lines = [line.strip().split() for line in open(spk2utt_file)] return {x[0]: x[1:] for x in lines}
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def busca_sentinela(list_to_search, value): """ Implementacao de um algoritmo de busca sentinela. Argumentos: value: Any. Valor a ser buscado na lista list_to_search: list. lista na qual o valor sera buscado Retorna o indice do valor em "list_to_search" ou -1 caso nao exista nela. """ ...
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from typing import Callable from typing import Dict def add_features(transform: Callable[[Dict], Dict], x: Dict) -> Dict: """ Takes the input, passes it to a transformation and merge the original input with the result of the transformation, can be used to augment data in the batch. .. note:: ...
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def get_spacy_token_class_config(): """ Configuration of spacy's Token class attribute :return: config dictionary of attributes/properties """ token_config = { "PROPERTIES": [ "lefts", "rights", "n_lefts", "subtree", "children", ...
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def create_grid_mapping(ds, wrf_out): """Add grid_mapping information from wrf_out to ds. Also adds coordinate variables and metadata does not set them Parameters ---------- ds: netcdf4.Dataset The dataset that needs the grid_mapping wrf_out: dict A dictionary with the grid...
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def insertGame(gtitle: str, release_date: str="0000-00-00") -> str: """Return a query to insert a game into the database.""" return (f"INSERT IGNORE INTO game (title, release_date) " f"VALUES ('{gtitle}', '{release_date}');" )
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import pathlib from typing import Tuple import ast def find_import_region(file: pathlib.Path) -> Tuple[int, int]: """Return the index of the first last import line that precedes any other code. Note: will not handle try/except imports file: pathlib.Path path to file to evaluate Return: Tuple[int, in...
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def lat_aggregate(cube, coord_names, lat_bounds, agg_method): """Dummy.""" return lat_bounds
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def all_subclasses(obj): """Used to introspect all descendents of a class. Used because metaclasses are a PITA when doing multiple inheritance""" sc_recr = [] for sc_obj in obj.__subclasses__(): sc_recr.append(sc_obj) sc_recr.extend(all_subclasses(sc_obj)) return sc_recr
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def greatest_product(array: list): """return greatest product of three numbers given positive numbers""" greatest_product = None array.sort() if len(array) >= 3: greatest_product = array[-1] * array[-2] * array[-3] print(f'Greatest product of three numbers: {greatest_product}') else: print('Not enough eleme...
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