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def max_production_rule(mod, prj, tmp): """ **Constraint Name**: Fuel_Prod_Max_Production_Constraint **Enforced Over**: FUEL_PROD_OPR_TMPS Fuel production can't exceed available production capacity. """ return ( mod.Produce_Fuel_FuelUnitPerHour[prj, tmp] <= mod.Fuel_Production_C...
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import argparse def get_predict_args(): """ Retrieves and parses the 3 command line arguments provided by the user when they run the program from a terminal window. This function uses Python's argparse module to created and defined these 3 command line arguments. If the user fails to provide som...
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def legacy_id_to_url_fn(id: str) -> str: """Generate an arxiv.org/archive URL given a paper ID.""" return 'https://arxiv.org/archive/' + id
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import json def utf8safe_encoder(obj): """ This fixes riak unicode issues when strings in blob are already UTF-8. """ return json.dumps(obj)
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def coord_num(phi): """ Calculates coordination number value as a function of porosity using the relationship: n = 20.0 - 34.0*phi + 14.0*phi**2.0 The above expression was copied from Avseth's QSI book, equation 2.7 on page 55. Usage: n = coord_num(phi) Inputs: phi = ...
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def feature_engineering(df): """Add statistics to raw data to analyze changes across time""" # day-to-day change df['result_count_absolute_change'] = df.groupby('keyword').results_count.diff().reset_index(drop=True) # day-to-day absolute change df['result_count_relative_change'] = (df.result_count_ab...
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def get_branch(version: str) -> str: """ Get the branch of an update """ return 'stable' if version.startswith('V') else 'weekly'
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def get_const_ratio_ints(ints, length): """f(n) = a(b^n)""" first = ints[0] ratio = int(ints[1] / ints[0]) return [first * (ratio ** n) for n in range(length)]
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def _CreateGooPkgRepo(messages, repo_id): """Create a goo repo in guest policy. Args: messages: os config guest policy api messages. repo_id: 'google-cloud-ops-agent-windows-[all|1]'. Returns: zoo repos in guest policy. """ return messages.PackageRepository( goo=messages.GooRepository( ...
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def confirm_proceed(prompt='Shall I proceed? (y/n)'): """ Prompts user for confirmation. Expects 'y' or 'n'. """ confirm = '' while confirm not in ('y', 'Y', 'n', 'N'): confirm = input(prompt) if confirm in ('n', 'N'): return False return True
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def set_inheritance(name, top_classes, schemas): """Set inheritance for object with a certain name.""" # this is the list of special keys that we copy in manually copied_keys = set(['type', 'properties', 'required']) # remove the class itself print(f'\nProcessing {name}') top_classes = top_class...
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def reversepath(path): """ This function reverses a path. """ return path[::-1]
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import math def computeCoordinates(point1 : tuple, point2 : tuple) -> tuple: """ Compute intersection points between circles. No/One point intersection not counted into """ x0, y0, r0 = point1 x1, y1, r1 = point2 d = math.sqrt((x1-x0)**2+(y1-y0)**2) a = (r0**2-r1**2+d**2)/(2*d) h = math.sqrt(abs(r0**2-a**2)...
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import json def json_minimal(data): """Get JSON data in minimal form.""" return json.dumps(data, separators=(",", ":"))
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import collections def get_table_data(cursor, table_name, single_row=False, replace_none=False): """ Extract all the data of the table Args: cursor: the DB cursor table_name: the name of the database single_row: if True, returns a single row replace_none: if True, replace ...
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import os def create_dir_callback(ctx, params, value: str): """ Create and return directory if it doesn't exist. :param ctx: The click context :param params: The click params :param value: The value to create the directory from :returns: The directory path """ os.makedirs(value, exist...
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def galois_multiply(a, b): """Galois Field multiplicaiton for AES""" p = 0 while b: if b & 1: p ^= a a <<= 1 if a & 0x100: a ^= 0x1b b >>= 1 return p & 0xff
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import os import requests def sign_in(): """ Signs into breezy using account credentials :param: :return: """ user_mail = os.environ["BREEZY_USER"] password = os.environ["BREEZY_PASS"] my_session = requests.session() sign_in_url = "https://app.breezy.hr/signin" data = { ...
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import numpy def make_test_ellipse(center=[1, 1], width=1, height=.6, phi=3.14 / 5): """Generate Elliptical data with noise Args ---- center (list:float): (<x_location>, <y_location>) width (float): semimajor axis. Horizontal dimension of the ellipse (**) height (float): semiminor axis. Verti...
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import base64 def serialise_job_command(command): """Serialise job command.""" return base64.b64encode(command.encode()).decode("utf-8")
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import math def calc_node_distance(graph, node_1, node_2): """ Calculates distance between two nodes of graph, Requires node attribute 'position' as shapely Point, e.g. Point(10, 15.2) Parameters ----------- graph : nx.graph Graph object of networkx node_1 : int Node id of...
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def compareThresh(value,threshold,mode,inclusive, *, default=False): """Returns a boolean only if value satisfies the threshold test. In case of failure of any sort, returns the default value (which defaults to 'False'). Accepted mode values are '<', '>', '<=' and '>='.""" #normalizing input i...
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import subprocess def ex_subprocess(cmd): """subprocess wrapper function Arguments: - cmd (list(str)): the command to feed the subprocess Return: (out, compl_proc, error_proc) (3-uple): - out (int) : 1 suprocess fail, 0 subprocess succeed - compl_proc (subproc...
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def get_L_BB_w_d(L_HP_d, L_dashdash_d, L_dashdash_w_d): """ Args: L_HP_d: param L_dashdash_d: L_dashdash_w_d: L_dashdash_d: Returns: """ return L_dashdash_w_d - L_HP_d * (L_dashdash_w_d / L_dashdash_d)
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from typing import Union import argparse def bool_none(value: str) -> Union[bool, None]: """ String True, False or None and return types bool or None.""" error_msg = f"{value} is an invalid bool or none" if value == "True": return True elif value == "False": return False elif value...
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def filter_rule(_): """ No rule is needed """ return True
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def calc_total_event(events_dict: dict) -> int: """各照射回数の合計を求める Args: events_dict (dict): Returns: int: cnt """ cnt = 0 for key in events_dict.keys(): n = int(events_dict[key]) cnt = cnt + n return cnt
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def _compute_bands_from_cuts(cuts, sequence_length, linear=True): """Compute the size of the obtained bands from the position of cuts. Returns a list of band sizes. Parameters ---------- cuts Location of the different cuts on the plasmid. sequence_length Length of the DNA molecule...
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import glob def sorted_glob(pathname):#, cmp=None, key=None, reverse=None): """Returns a sorted list of file names matching glob pattern `pathname'. Added here to accomodate older python that do not have sorted() function.""" rslt = glob.glob(pathname) rslt.sort() #cmp=cmp, key=key, reverse=reverse) return ...
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def partition(array, left_index, right_index): """ 分区函数 :param array: 一个数组 :param left_index: 数组的左边界,起始通常是 0 :param right_index: 数组的右边界,起始通常是数组长度 - 1 :return: 返回基准元素的位置 """ pivot = array[left_index] while left_index < right_index: while left_index < right_index and pivot <= a...
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def _units_coef_clac(): """ Calculates the unit coefficients Parameters ---------- Returns ------- : dictionary "density" in (double) g cm^-3 "pressure" in (double) dyns cm^-3 "r" in (double) km "j" in (double) m^2 kg """ # mas of sun in kg cons...
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def _get_valid_indices(shape, ix0, ix1, iy0, iy1): """Give array shape and desired indices, return indices that are correctly bounded by the shape.""" ymax, xmax = shape if ix0 < 0: ix0 = 0 if ix1 > xmax: ix1 = xmax if iy0 < 0: iy0 = 0 if iy1 > ymax: iy1 = ym...
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def get_var(environ, keys, default=None): """Try each of the keys in turn before falling back on the default.""" for key in keys: if environ.has_key(key): return environ.get(key) return default
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def sometrue(*args, **kwargs): """ Check whether some values are true. Refer to `any` for full documentation. See Also -------- any : equivalent function; see for details. """ return any(*args, **kwargs)
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def concept_folders(): """ Returns the folders containing concepts. """ return ['comorbidity', 'demographics', 'measurement', 'medication', 'organfailure', 'treatment', 'score', 'sepsis', 'firstday']
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def _label_str(block): """Returns a string by which the given block may be named, even if `None`.""" if block is None: return 'exit' else: return block.label_str
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def react_polymer(polymer_string): """ Iterate through polymer_string, replacing all instances where two adjacent characters are case-insensitive equal but not equal (i.e. A and a) with the empty string """ # convert to a list since strings are immutable polymer_list = [i for i in polymer_st...
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import codecs def to_json(python_object): """For py3 compat""" if isinstance(python_object, bytes): return {'__class__': 'bytes', '__value__': codecs.encode(python_object, 'base64').decode()} raise TypeError(repr(python_object) + ' is not JSON serializable')
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def deepgetattr(obj, attr, default = None): """ Get a named attribute from an object; multi_getattr(x, 'a.b.c.d') is equivalent to x.a.b.c.d. When a default argument is given, it is returned when any attribute in the chain doesn't exist; without it, an exception is raised when a missing attribute is...
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def snps_to_genes(snps): """Convert a snps dict to a genes dict.""" genes = {} for chrom in snps.values(): for snp in chrom.values(): if snp.gene.name not in genes: genes[snp.gene.name] = snp.gene return genes
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def expected_cuts(cut_coords): """Expected cut with test_demo_mosaic_slicer.""" if cut_coords == (1, 1, 1): return {'x': [-40.0], 'y': [-30.0], 'z': [-30.0]} if cut_coords == 5: return {'x': [-40.0, -20.0, 0.0, 20.0, 40.0], 'y': [-30.0, -15.0, 0.0, 15.0, 30.0], ...
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def graphql_mutation( field_name, field_type, arguments={}, context_args=[], description=None, is_deprecated=False, deprecation_reason=None): """Annotate a function as corresponding to a GraphQL mutation. Decorator that annotates a function as corresponding to a GraphQL mutation; i.e. a fie...
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def _wrap_update_fn(opt_name, opt_update): """Wraps the optimizer update function to have the same function signiture. Args: opt_name: the optimizer name. opt_update: the optimizer update function. Returns: A wrapped optimizer update function. """ def update_fn(grads, optimizer_state, params, bat...
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def KWW_modulus(x, logomega0, b, height): """1-d KWW: KWW(x, logomega0, b, height)""" return height / ((1 - b) + (b / (1 + b)) * (b * (10**logomega0 / x) + (x / 10**logomega0)**b))
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import shutil def check_disk_space(available_disk_space_percent_threshold): """ Checks if disk space is above given threshold. Args: available_disk_space_percent_threshold(int): The disk space threshold you want the root drive to be above. Returns: (Bool): Returns true if disk sp...
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def _flatten(lst, cls): """ Helper function -- return a copy of list, with all elements of type ``cls`` spliced in rather than appended in. """ result = [] for elt in lst: if isinstance(elt, cls): result.extend(elt) else: result.append(elt) return resu...
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def humanize_timedelta(td): """Pretty-print a timedelta in a human readable format.""" secs = int(td.total_seconds()) hours, secs = divmod(secs, 60 * 60) mins, secs = divmod(secs, 60) if hours: return '%dh %dm' % (hours, mins) if mins: return '%dm' % mins return '%ds' % secs
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def sublist_name_from_connection_id(conn_name, subconn_name): """ Removes prefixed parent_connection_id from connection_id as introduced by sesam 2019.09 :param conn_name: list connection name aka parent_connection_id :param subconn_name: subconnection name aka connection_id """ return conn_...
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def is_game_row_valid(game, lookup): """Returns whether all columns can be found in the game entry. Parameters: game: the entry for the game lookup: a lookup for fields to indexes in columns Returns: true if valid row otherwise False """ for index in lookup.values(): ...
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def format_syntax_error(e: SyntaxError) -> str: """ Formats a SyntaxError. """ if e.text is None: return "```py\n{0.__class__.__name__}: {0}\n```".format(e) # display a nice arrow return "```py\n{0.text}{1:>{0.offset}}\n{2}: {0}```".format( e, "^", type(e).__name__)
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def load_jumping_distribution_from_hdf5_group(group): """ Loads a `distpy.jumping.JumpingDistribution.JumpingDistribution` from the given hdf5 group. Parameters ---------- group : h5py.Group the hdf5 file group from which to load the `distpy.jumping.JumpingDistribution.Jumpi...
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from typing import List from typing import Dict def diff_to_new_interesting_lines(unified_diff_lines: List[str]) -> Dict[int, str]: """ Extracts a set of 'interesting' lines out of a GNU unified diff format. Format: gnu.org/software/diffutils/manual/html_node/Detailed-Unified.html @@ from-li...
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def inconsistent_typical_range_stations(stations): """Return list of stations with inconsistent data.""" inconsistent_stations = [] for x in stations: if not x.typical_range_consistent(): inconsistent_stations.append(x.name) return inconsistent_stations
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import argparse def controll_argument(): """ command line arguments """ # args parser = argparse.ArgumentParser() parser.add_argument("log_path") parser.add_argument("out_path") args = parser.parse_args() log_path = args.log_path out_path = args.out_path return log_path, out_path
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def load_key(): """ Load the previously generated key """ return open("secret.key", "rb").read()
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import random def first_cards(closed_deck): """returns 7 random cards for a player""" cards=random.sample(closed_deck,7) #Checks the cards given dont exceed 50pt score=0 for i in range(7): score+=cards[i][2] while score>50: cards=random.sample(closed_deck,7) score=0 ...
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import shutil def terminalWidth(): """! Return the current number of columns of the terminal. \note This does not give the proper size if `sys.stdout` is redirected to a file. """ return shutil.get_terminal_size().columns
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import enum def get_definitions(swagger_spec): """ Converts definition dict into an enum to eliminate magic strings. """ if not hasattr(swagger_spec, "_definitions_enum"): def_dict = swagger_spec.spec_dict.get("definitions") swagger_spec._definitions_enum = enum.Enum("Definitions", def_dict) ...
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import argparse def required_length(nmin,nmax, sort: bool = False): """Fonction donnant le nombre d'arguments min et max :param nmin: nombre min d'arguments :type: int :param nmax: nombre max d'arguments :type: int :param sort: :type: bool """ class RequiredLength(argparse.Actio...
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def position_is_bomb(bombs, position): """Check if a given position is a bomb. We don't check the board because that is an unreliable source. An agent may be obscuring the bomb on the board. """ for bomb in bombs: if position == bomb.position: return True return False
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import pkg_resources def ribbon(): """Entry point for getting the pyxll ribbon file. Returns a list of (filename, data) tuples. """ ribbon = pkg_resources.resource_string(__name__, "resources/ribbon.xml") return [ (None, ribbon) ]
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def find_xpath(xpath, tree, namespaces={}, **kwargs): """ Find elements within an XML tree whose attributes match certain values. :param xpath: an xpath query string. :param tree: `xml.etree.ElementTree` object. :param namespaces: a dictionary of namespace prefixes. :param kwargs: specifies...
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import re def get_hm(in_file): """ 从输入文件中获取 hm :param in_file: :return: """ if not isinstance(in_file, str): return m = re.match(r".*_(\d{4})_", in_file) if m is None: return else: return m.groups()[0]
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import math def _CalcNumberOfLODs(size): """ For illustration only. Use len(_CalcLodSize(...)) instead. This method suffers from numerical accuracy issues. """ assert False return math.ceil(math.log(max(size))/math.log(2)) + 1 if size and max(size) >= 1 else 0
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import inspect def getPublicTypeMembers(type_, onlyValues=False): """ Useful for getting members from types (e.g. in enums) >>> [_ for _ in getPublicTypeMembers(OS, True)] ['Linux', 'Windows'] """ retVal = [] for name, value in inspect.getmembers(type_): if not name.startswith("...
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def imt(token, i=None, m=None, t=None): """Helper function to simplify comparisons Instance, Match and TokenType :param token: :param i: Class or Tuple/List of Classes :param m: Tuple of TokenType & Value. Can be list of Tuple for multiple :param t: TokenType or Tuple/List of TokenTypes :return:...
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def rolling_average(current_avg: float, new_value: float, total_count: int) -> float: """Recalculate a running (or moving) average Needs the current average, a new value to include, and the total samples """ new_average = float(current_avg) new_average -= new_average / total_count new_average +...
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from typing import List from typing import Dict def _process(proc_data: List[Dict]) -> List[Dict]: """ Final processing to conform to the schema. Parameters: proc_data: (List of Dictionaries) raw structured data to process Returns: List of Dictionaries. Structured to conform to t...
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def regex_escape(raw): """Escape lua regex.""" escaped = raw escaped = escaped.replace("%", "%%") escaped = escaped.replace("^", "%^") escaped = escaped.replace("$", "%$") escaped = escaped.replace("(", "%(") escaped = escaped.replace(")", "%)") escaped = escaped.replace("[", "%[") e...
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def remove_specific_key(dictionary, key): """ Remove a specific named key from a dictionary. Args: dictionary: The dictionary to have a key removed key: The key to be removed Returns: dictionary: The dictionary with the key removed """ if key in dictionary: del ...
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def is_bad_common(radar): """common rejection conditions for all radars""" no_dualpol = 'PHIDP' not in radar.fields not_ppi = radar.sweep_mode['data'][0] != 'azimuth_surveillance' elevation = radar.get_elevation(0).mean() high_elev = elevation > 1.5 low_elev = elevation < 0.05 return no_dual...
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def series(ui, repo, **opts): """print the entire series file Returns 0 on success.""" repo.mq.qseries( repo, missing=opts.get('missing'), summary=opts.get('summary') ) return 0
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def pulse_sink_port(sink, name_or_desc): """ Returns the PulseSinkInfo that matches the string, either against the name or the description. :param sink: the PulseSinkObject to get the port from :type sink: pulsectl.PulseSinkObject :param name_or_desc: the name or description string to look for, use...
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def compss_open(job, *args, **kwargs): # pylint: disable=unused-argument """ Dummy open function required when copying from out of the COMPSs system """ return job
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import torch def less_three_percentage(y_true, y_pred, interval): """ less three accuracy for one batch """ batch_size = y_pred.shape[0] height = y_pred.shape[1] width = y_pred.shape[2] interval = interval.reshape(batch_size) mask_true = torch.ne(y_true, 0.0).float() denom = torch.sum(mask...
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import pandas def unsplit(x,f): """ same as R's unsplit function Read of the values specified in f from x to a vector Inputs: x: dictionary of value->[items] f: vector specifying values to be read off to the vector """ y = pandas.DataFrame({"y":[None]*len(f)}) f = pandas.Serie...
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def _group_list(items, lens): """ Unflat the list of items by lens :param items: list of items :param lens: list of integers :return: list of list of items grouped by lengths """ res = [] cur_ofs = 0 for g_len in lens: res.append(items[cur_ofs:cur_ofs+g_len]) cur_ofs ...
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import json def dump_bytes(*args, **kwargs): """Converts an object to JSON and returns the bytes.""" return json.dumps(*args, **kwargs).encode("ascii")
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import copy def _GenerateInferredAshFlags(device_config): """Generate runtime-packed ash flags into a single device config. Chrome flags are packed into /ui:serialized-ash-flags in the resultant runtime-only configuration, as a string of null-terminated strings. Args: device_config: transformed config...
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from typing import Sequence def _should_ignore_markdown_cell( source: Sequence[str], skip_celltags: Sequence[str], tags: Sequence[str], ) -> bool: """ Return True if the current cell should be ignored from processing. Parameters ---------- source Source from the notebook cell ...
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def leapyr(year: int): """" This function defines if the year is a Leap year (366 days) or a Normal year (365 days). Then it will to the variable n the value of 366 or 365, accordingly. Returns a Tuple: - number of days tha year, - and a Boolean : ...
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def station_locations(df, id_index): """ Creates a dictionary with station IDs as keys and locations as values. Parameters ---------- df : pandas DataFrame Bikeshare trip data. id_index : dict Maps station ID (arbitrary integer) to the range from 0 to number of stations Ret...
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def camel_to_snake(s: str) -> str: """Converts "CamelCase" to "snake_case".""" return "".join(f"_{c}" if c.isupper() else c for c in s).strip("_").lower()
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import re def tag_is_spacegroup(text): """Check if a HTML tag looks like a spacegroup name. This does a very crude test to see whether the supplied string looks like a spacegroup name (rather than a random HTML tag).""" spacegroup = re.compile(r"<?[PABCIFHRpabcifhr] *[1-9][1-9]? *[1-9]?[1-9]? *[1-9]?[1-9]...
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import math import torch def phi_2d(seq, n): """ computes bi-linear interpolation coefficients of a single 2D point :param seq: Tensor of shape (traj_len, batch, 2); the sequence of positions (should be normalized in [0,1] interval) :param n: number of nodes (in the case of a square grid, its dimensio...
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import binascii def npbytearray2hexstring(npbytearray, prefix="0x"): """Convert a NumPy array of uint8 dtype into a hex string. Example: npbytearray2hexstring(array([15, 1], dtype=uint8)) = "0x0f01" """ return prefix + binascii.hexlify(bytearray(npbytearray)).decode("utf-8")
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def update_halley(yvals, y0): """Calculate the variable increment using Halley's method. Calculate the amount to increment the variable by in one iteration of Halley's method. The goal is to find the value of x for which y(x) = y0. `yvals` contains the values [y(x0), y'(x0), y''(x0), ...] of the functi...
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def calculate_angle(hour, minute): """ Assuming 12 hours is 360 degree which is (720 minutes) or 0.5 degree per minute and 60 minutes = 360* which 6 degree per minutes. """ if hour == 12 and minute == 60: hour, minute = 0, 0 angle_of_hour_hand = (60 * hour + minute) / 2 angle_of_...
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def getAllSupportedCommands(): """(Script only) Retrieves all available integration commands and scripts :return: Object of all available integrations and scripts :rtype: ``dict`` """ return {}
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def cosine_dis(XXT): """ [Added 22/10/2018] Performs XXT*-1 + 1 quickly on the lower triangular part. """ n = len(XXT) for i in range(n): for j in range(i): XXT[i, j] *= -1 XXT[i, j] += 1 return XXT
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import torch def spatial_gradient(x: torch.Tensor, dim: int) -> torch.Tensor: """ Calculate gradients on single dimension of a tensor using central finite difference. It moves the tensor along the dimension to calculate the approximate gradient dx[i] = (x[i+1] - x[i-1]) / 2. Adapted from: ...
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def convert_by_vocab(vocab, items, unk_info): """Converts a sequence of [tokens|ids] using the vocab.""" output = [] for item in items: if item in vocab: output.append(vocab[item]) else: output.append(unk_info) return output
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def _fill_fields(fields, values): """Fill all possible *fields* with key/[value] pairs from *values*. :return: subset of *values* that raised ValueError on fill (e.g. a select could not be filled in because JavaScript has not yet set its values.) """ unfilled = [] for name, field_values in v...
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def initialized(machine): """ Check to see if the given machine is initialized. :param machine: Machine to check to see if default attributes are set :return: `True` if the machine has its attributes set, `False` otherwise """ return all(hasattr(machine, attr) for attr in ('state', 'transition'...
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import unicodedata def doc_content(filename: str) -> str: """Return the content of file.""" with open(filename, mode="r", encoding="utf-8") as f: try: return unicodedata.normalize("NFC", f.read()) except UnicodeDecodeError as e: raise ValueError("The input file must be...
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def indices_to_coordinates(i, dx=1, offset=0): """dx = (X.max() - X.min()) / (N - 1) + offset X is an array of x's N is the length X """ return i * dx + offset
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from numpy import exp def htc(water, geometry, T_w): """ Subcooled boiling: The correlation of Thom originally developed for Pressurized Water Reactors was adapted to the one-side heating conditions by CEA by introducing a modification of the exponent in...
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def _read_nlines(filename, nlines): """ Read at most nlines lines from file filename. If nlines is < 0, the entire file is read. """ if nlines < 0: with open(filename) as fh: return fh.readlines() lines = [] with open(filename) as fh: for lineno, line in enumerat...
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def human_time(seconds): """Returns a human-friendly representation of the number of seconds.""" assert seconds >= 0 hours = seconds / (60 * 60) minutes = (seconds / 60) % 60 seconds = seconds % 60 return '%02d:%02d:%02d' % (hours, minutes, seconds)
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from pathlib import Path def datadir(): """ """ return Path(__file__).parent.joinpath("data")
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