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def characterizePrimal(lp): """ Defines primal variables, and their boundaries within the primal problem formulation (using function call). This might enhance the speed, but is no requirement. - *lp* cplex lp object - *primalConstraints* primal constraint names (metabol...
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def sanitize_wwpn_for_api(wwpn): """Updates the format of the WWPN to match the expected PowerVM format. :param wwpn: The original WWPN. :return: A WWPN of the format expected by the API. """ return wwpn.upper().replace(':', '')
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def initTerrain(s): # THE CLASSIC """ Initialization of the terrain with graph like terrain... vertices are modeled implicitly """ nt = ["A", "C", "G", "U"] nt2 = [ "AA", "AC", "AG", "AU", "CA", "CC", "CG", "CU", "GA", ...
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def buffer_raster(arr): """ """ max_row = arr.shape[0] max_col = arr.shape[1] buffered = arr.copy() for row in range(0, max_row): for col in range(0, max_col): loc = (row, col) if arr[loc] == 1: for i in range(-1, 2): for j i...
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import warnings def unit(self): """DEPRECATED""" warnings.warn( "The FitVal class has been depreacted and replaced with UFloat " "objects which do not contain units. This will return the .tag " "property which may be equivalent to the FitVal.unit property " "if constructed from...
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def encode_state(fs, fluent_map): """ Convert a FluentState (list of positive fluents and negative fluents) into an ordered sequence of True/False values. It is sometimes convenient to encode a problem in terms of the specific fluents that are True or False in a state, but other times it is easier (or ...
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def reply(read=20, write=20): """Return the kwargs for creating the Reply table.""" return { 'AttributeDefinitions': [ { 'AttributeName': 'Id', 'AttributeType': 'S' }, { 'AttributeName': 'ReplyDateTime', ...
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def dummy_gettext(message): """ Mimic ``gettext()`` function. This is a passthrough function with the same signature as ``gettext()``. It can be used to simulate translation for applications that are untranslated, without the overhead of calling the real ``gettext()``. """ return message
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def new(name): """ Creates a new visual layer :param name: Name of hte layer to create :type name: str :return: Host Specific """ return None
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def get_sets_from_mask(meta, mask_name): """ Recursively retrieve the sets indicated by the named mask. """ sets = [] for item in meta['masks'][mask_name]['items']: source, name = item['source'].split('@') if source=='sets': sets.append(name) elif source=='column...
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def escape(line): """Escapes special LaTeX characters by prefixing them with backslash""" for char in '#$%&_}{': line = [column.replace(char, '\\'+char) for column in line] return line
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import re def read_babidialog(file_name): """ read babi dialog dataset """ babi_dialog = [] with open(file_name, 'r') as f: temp = [] KB = [] for line in f: line = line.strip() if line == '': babi_dialog.append({"dialogue": temp, "met...
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def toggle_settings(toolbar=False, nbname=False, hideprompt=False): """ toggle main notebook toolbar (e.g., buttons) & filename """ toggle = '' if toolbar: toggle += 'div#maintoolbar {margin-left: 8px !important;}\n' else: toggle += 'div#maintoolbar {display: none !important;}\n' ...
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from pathlib import Path def get_script_path(script_name: str): """ Retrieves script path where name is matching {{script_name}}. """ p = Path(__file__).parents[1] script_path = str(Path(p, "assets/scripts", script_name)) return script_path
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import os def check_files_in_dir_from_file(directory, file): """ Check that a list of files from a file exist in a dir Parameters ---------- directory file Returns ------- """ with open(file) as f: lines = f.readlines() files_in_dir = os.listdir(directory) f...
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def remove_suffixes(text: str, suffixes:list) -> str: """Removes pre-defined suffixes from a given text string. Arguments: text: Text string where suffixes should be removed suffixes: List of strings that should be removed from the end of the text Returns: text: Text string with re...
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def run_and_return_first_line(run_lambda, command): """Runs command using run_lambda and returns first line if output is not empty""" rc, out, _ = run_lambda(command) if rc != 0: return None return out.split("\n")[0]
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def load_template(config): """Return text of template file specified in config""" with open(config['template'], 'r') as template_file: return template_file.read()
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def norm_shape(shape): """ Normalize numpy array shapes so they're always expressed as a tuple, even for one-dimensional shapes. Parameters shape - an int, or a tuple of ints Returns a shape tuple """ try: i = int(shape) return (i,) except TypeError: ...
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def batch_size(y_true, y_pred): """Count the number of items in the current batch.""" return y_true.shape[0]
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import logging def formatterStd(): """Returns a standard formatter. :rtype: logging.Formatter """ return logging.Formatter("%(asctime)s: %(message)s")
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import hashlib import os import uuid import base64 def _generate_token_sign_sharedkey(): """Generate an ASCII-safe key from proper randomness, time, MAC. Returns: str: key with 80 ASCII-safe characters. """ # Pull in 512 bytes from the operating system's random source, and combine # this ...
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import time def convert_atom_timestamp_to_epoch(text): """Helper function to convert a timestamp string, for instance from atom:updated or atom:published, to milliseconds since Unix epoch (a.k.a. POSIX time). `2007-07-22T00:45:10.000Z' -> """ return str(int(time.mktime(time.strptime(text.spli...
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import sys def _line(depth=0): """ get current code line number :param depth: the depth of the frame at the top of the call stack. :return: line number """ return sys._getframe(depth + 1).f_lineno
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def find_field(d, candidates): """ Given a dict and a list of possible keys, find the first key which is included into this dict. Throws ValueError if not found. """ for c in candidates: if c in d: return c raise ValueError(f"Can't find any of: {candidates}")
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def __renumber(dictionary): """Renumber the values of the dictionary from 0 to n """ count = 0 ret = dictionary.copy() new_values = dict([]) for key in dictionary.keys(): value = dictionary[key] new_value = new_values.get(value, -1) if new_value == -1: new_va...
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def get_container_type(full_name: str) -> type: """ get a new type to be used as a container Args: full_name (str): full name to distinguish from other types. Returns: type: a new type """ cls_name = "".join([name.capitalize() for name in full_name.split(".")]) return type...
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def react_with_multiple_reactants(mol_tuple, mol_name, rxn_obj): """ This will run a single molecule through a 1-reactant reaction. If it fails it will return the name of mol (mol_info[1]) If it passes it will return None Inputs: :param tuple mol_tuple: a tuple of all mols to react :param s...
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def binom(n, k): """Quickly adapted from https://stackoverflow.com/questions/26560726/python-binomial-coefficient""" if k < 0 or k > n: return 0 if k == 0 or k == n: return 1 total_ways = 1 for i in range(min(k, n - k)): total_ways = total_ways * (n - i) // (i + 1) return...
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def leadingzero(number, minlength): """ Add leading zeros to a number. :type number: number :param number: The number to add the leading zeros to. :type minlength: integer :param minlength: If the number is shorter than this length than add leading zeros to make the length correct. :retur...
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def entry_value(el): """given a DTIPrep QA entry element, return the text of its child <value>""" children = el.getElementsByTagName('value') if not children: return '' s = '' for cn in children[0].childNodes: if cn.nodeType == cn.TEXT_NODE: s += cn.data return s
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from pathlib import Path def _find_json(db_dir): """Search with tags. Args: db_dir (str): Directory path which has database files. Returns: (list): List of json file path. """ p = Path(db_dir) json_list = list(p.glob("**/*.json")) json_list.sort() return json_list
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def trace(root): """root: a Value object with name""" nodes, edges = set(), set() def build(v): if v not in nodes: nodes.add(v) for child in v._prev: edges.add((child, v)) build(child) build(root) return nodes, edges
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import numpy def general_basis_change(general_tensor, rotation_matrix, key): """Change the basis of an general interaction tensor. M'^{p_1p_2...p_n} = R^{p_1}_{a_1} R^{p_2}_{a_2} ... ...
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def get_maintainers(): """ replace the maintainers content while creating the package""" with open("MAINTAINERS.md", "r", encoding="utf8") as fh: maintainers_description = fh.read() return maintainers_description
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def ndpa_read(ndpa_file, force_closed=False): """Read all annotations. Args: ndpa_file (str): annotation file name force_closed (bool): should polygonal lines be forced to form a closed contour (i.e. first and last points are identical) Returns: -a dictionary with keys ...
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def ConvertToInterval(timestamp): """Converts a datetime timestamp to a time interval for a cron job. Args: timestamp: a datetime.datetime object Returns: A value between 0 and 55 corresponding to the interval the timestamp falls in. In this calculation, 12am on Monday is interval 0 and each int...
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import json def json_loads(*args, **kwargs): """Deserialize a str or unicode instance to a Python object. 'simplejson' is used in Python 2.6 environment, because standard 'json' library not include several important features(for example 'object_pairs_hook', which allows to deserialize input object to...
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def cast_list(*elements) -> list: """this method transform everything in a list, ex:\n cast_list("a","b") returns: ["a","b"]\n cast_list([1,2]) returns: [1,2]\n""" # when * is used all the arguments will be passed as tuple # means just one element were passed as arg if len(elements) == 1: ...
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def flops_to_string(flops): """Converts flops count to a human-readable form""" flops_str = '' if flops // 10 ** 9 > 0: flops_str = str(round(flops / 10. ** 9, 2)) + 'GMac' elif flops // 10 ** 6 > 0: flops_str = str(round(flops / 10. ** 6, 2)) + 'MMac' elif flops // 10 ** 3 > 0: ...
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def _filter(names, spec): """Remove names from list of names.""" if isinstance(spec, str): names.remove(spec) elif isinstance(spec, list): for item in spec: names.remove(item) elif isinstance(spec, dict): for item in spec.values(): names.remove(item) r...
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from typing import List def data() -> List: """Data fixture.""" return [-4, 2, 0.5, None, "hey", [10], {"k": 1}]
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def _blank_out_conflicting_opts(opt_list, opt_names, conflicting_opts=None): """Utility for :py:meth:`MRJobRunner._combine_opts()`: if multiple configs specify conflicting opts, blank them out in all but the last config (so, for example, the command line beats the config file). This returns a copy of *...
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def replace_final_line(edited_lines): """Replace final line internal tutorial link with external links.""" expected_final_line = ( "For a more thorough introduction," " check out the :ref:`tutorial`.\n" ) new_final_line = ( "You can find the complete documentation" "\ninc...
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import getpass def getpassword() -> str: """ This function has been manually tested. It successfully detects and exits when user enters a blank password, or when the user enters 2 passwords that don't match. """ password1 = getpass.getpass("Enter a password: ") password2 = get...
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import os def get_file_size_in_bytes(file_path): """ Get size of file at given path in bytes""" size = os.path.getsize(file_path) return size
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def count(g: int)->int: """ function is calculating the number of digitd in the given number, by dividing the number by 10 with every iteration and increasing the count. Input: Integer Output: Integer """ c = 0 while g!=0 : g //= 10 c +=1 return c
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def get_average(img, u, v, n): """img as a square matrix of numbers""" s = 0 for i in range(-n, n+1): for j in range(-n, n+1): s += img[u+i][v+j] return float(s)/(2*n+1)**2
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def _create_padded_message(message: str) -> str: """Create padded message, used for encrypted responses.""" extra = len(message) % 16 return (16 - extra) * "0" + message
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def basic_stats(db): """Collect basic statistics to be fed to output functions""" rps = len(list(db['rp'].keys())) users = len(list(db['users'].keys())) logins = db['logins'] return {"rps": rps, "users": users, "logins": logins}
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def strip_chrom(chrom): """ Remove Chr or chr from the chromosome id :param chrom: String :return: String """ if 'chr' in chrom.lower(): return chrom[3:] else: return chrom
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def _get_user_display_name(user): """Return a human-friendly display name for a user.""" # An anonymous user has no display name if user.is_anonymous: return '' # Form display name by concatenating first and last names and stripping whitespace display_name = user.get_full_name().strip() ...
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import random def query_random_uuids(conn): """Query for 10 random UUIDs by generating 10 random IDs locally""" cur = conn.cursor() cur.execute(""" select uuid_generate_v4 from t_random where s in ({}) """.format(", ".join([str(random.randint(1, 5000000)) for x in range(5)]))) retu...
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import random def fragment_list(tot_len, n_frags): """ A little function to help trouble shoot list_chunker. Creates a list of lists by randomly fragmenting range(tot_len) into n_frags list Args: tot_len: the total number of elements in the lists n_frags: the number of lists Retu...
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def clean_Es(Es): """ Auxiliary method """ return [ x for x in Es if x != 0 ]
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def integer_to_vector_multiple_numbers(x, n_options_per_element, n_elements, index_to_element): """Return a vector representing an action/state from a given integer. Args: x (int): the integer to convert. n_options_per_element(list): number of options for each element in the vector. n_e...
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def _time_last_active(cluster_summary, steps): """When did something last happen with the given cluster? Things we look at: * cluster's ``CreationDateTime`` (always set) * cluster's ``ReadyDateTime`` (i.e. when bootstrapping finished) * step's ``CreationDateTime`` for any step * step's ``Start...
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def binarySearch(nums, target): """ 递归版本 """ def search(nums, target, left, right): if left > right: return -1 mid = (left + right) / 2 if nums[mid] == target: return mid if nums[mid] > target: return search(nums, target, left, mid-1) ...
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import re def format_imports(text): """ Takes a string of text and formats it based on rule 3 (see docs). """ # rule to find consective imports regex4 = r"^import[\s\w]+?(?=from|^\s*$)" # this subsitution will happen with a function def subst4(match_obj): pattern = r"import (\w+)"...
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def combine_uptake_dates_release(df, rls_date_df, vers_col="dvers"): """ Add `version` and `date` colums to df to get release dates. These release datese will be pulled from `product details` and `buildhub` (for beta rc). @df: version updake data that contains `vers_col` @rls_date_df: df with `v...
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def reconcile_journal (schol, graph, pub, disputed): """ reconcile the journal entity and ISSN for the given publication """ journal_list = graph.journals.extract_journals(pub) count, freq_issn, issn_tally = graph.journals.extract_issn(pub) graph.journals.issn_hits += count # attempt a matc...
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def rev_vid(image): """ Performs reverse video filter on input image. :param image: an ndarray for a single-layer greyscale image, where each element corresponds to a pixel. :return: An ndarray that is the reverse video of input """ inverted = 255 - image return inverted
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def set_prior_installation_required( repository, required_repository ): """Return True if the received required_repository must be installed before the received repository.""" # This method is called only from Galaxy when rendering repository dependencies for an installed tool shed repository. required_repo...
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def check_version_info(cfg_file): """Checks for bumpversion version info. If found, prints it out and exits. Returns: None, if nothing found. """ with open(cfg_file, "r") as f: for i, line in enumerate(f.readlines()): version_line_start = "current_version" if li...
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import os def _get_umask(): """ Get current umask (without changing it as os.umask does). """ umask = os.umask(0) # Get umask and set it to 0 os.umask(umask) # Set umask back to its original value return umask
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def mapSingleRegion(item): """ Used to assign the required zone to each coordinate by reading wool colour from the world of the block. """ if item == 2: return "Cockpit" elif item == 1: return "Forward Cabin" elif item == 4: return "Left Wing" elif item == 15: ...
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def get_central_meridian(srs): """ Get the central meridian of the projection Parameters ---------- srs : object OSR spatial reference system Returns ------- : float central meridian """ return srs.GetProjParm('central_meridian', 0.0)
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from typing import List from typing import Dict from typing import Callable from typing import Any def _dict_from_terse_tabular( names: List[str], inp: str, transformers: Dict[str, Callable[[str], Any]] = {})\ -> List[Dict[str, Any]]: """ Parse NMCLI terse tabular output into a lis...
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def pytest_funcarg__doctree(request): """ The transformed doctree of the ``content``. .. note:: This funcarg builds the application before test execution. """ app = request.getfuncargvalue('app') app.build() return app.env.get_doctree('index')
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import argparse def get_input_args(): """ Command Line Arguments: 1. Image path 2. Path of the saved model 3. Number of the top k most likely classes as --top_k with default value 5 4. JSON file to map categories to real names as --category_names with default value label_map.json T...
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def snake2pascal(string: str): """String Convert: snake_case to PascalCase""" return ( string .replace("_", " ") .title() .replace(" ", "") )
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def taille(arbre): """Renvoie la taille de l'arbre""" if arbre is None: return 0 else: return 1 + taille(arbre.get_gauche()) + taille(arbre.get_droite())
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def all_keys_true(d, keys): """Check for values set to True in a dict""" if isinstance(keys, str): keys = (keys,) for k in keys: if d.get(k, None) is not True: return False return True
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def event_callback(callback, **kw): """ Add keyword arguments to the event callback. """ return lambda evt: callback(evt,**kw)
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import re def convert_newline(value): """convert CR-LF to unix-like new line as LF""" return re.sub(r"\r\n", r"\n", value)
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def parseLinkList(theData): """ Plug the verified data into here... """ DLDICT,VERDICT = {},{} sectStr = None for line in theData.split('\n'): pcs = line[1:].split() if line.startswith('# SECTION-') and 'INSTALLERS' in line: sectStr = pcs[0].split('-')[-1].lower() if no...
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def rise_velocity_selector(size_class, w_rise_list): """ This removes the smallest rise velocity from w_rise_list :param size_class: :param w_rise_list: :return: """ if size_class is 'large': if -0.0003 in w_rise_list: w_rise_list.remove(-0.0003) return w_rise_list
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def this_exist_not_null(param): """Check if parameter exists or not""" if ( not param or len(param) < 1 ): return False return True
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def places(): """ all the positions on a board """ return ((x,y) for x in range(9) for y in range(9))
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def score_edit_distance(proposed, existing): """Score a proposed change primarily by edit distance""" sum = 0 for p in proposed: if p not in existing: sum += 1 for e in existing: if e not in proposed: sum += 1 return sum
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def prepare_board(): """ make board in form of nested lists returns: nested lists """ board = [] temp = [] for i in range(100,0,-1): temp.append(str(i)) if (i-1)%10 == 0: board.append(temp) temp = [] for j in range(len(board)): if j%2: ...
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def InpDattoSITE(TASK): """InpDattoSITE function: prepare data for sankey plot (from Input-Dataset to Site)""" count_rows = 0 for k in TASK["data"]["datasets"]: for i in TASK["data"]["datasets"][k]["jobs"]: count_rows = count_rows + 1 f = count_rows c = 3 # c: number of columns ...
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def get_safe_filename(title): """ Get a safe string to use as a filename :param title: your target file title :return: the filename to use :rtype: str """ keep_chars = (' ', '.', '_') return "".join(c for c in title if c.isalnum() or c in keep_chars).rstrip()
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def parse_data(data, d=None): """ Function to parse the incoming -D options into a dict """ if d is None: d = {} for kv in data: key = kv.split('=')[0] try: val = kv.split('=', 1)[1] except IndexError: val = True d[key] = val return d
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def time_format(num, digits=1, align_unit=False): # type: (float, int, bool) -> str """Format and scale output according to standard time units. Example ------- >>> time_format(0) '0.0 s' >>> time_format(0, align_unit=True) '0.0 s ' >>> time_format(0.002) '2.0 ms' >>> t...
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def encrypted_unencrypted(): """Return None for a unencrypted test.""" return None
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import torch def compute_accuracy(dataloader, pred_list, nb_models): """ Computes the accuracy across al batches between the true labels in the dataloader and the batch predictions in pred_list ------------------ Input: dataloader: contains the validation dataset X,y pred_list: list of of tens...
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import re def retrieveQueries(queryFile): """ Retrieves the queries done on Google Ngram Viewer from the name of the .csv file """ queries = [] nameFile = queryFile.split('-fre')[0] if re.search(r'([A-Z]{3,4})', queryFile) != None: nameFile = nameFile.split('_') if '[' in queryFil...
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def word2number(s: str) -> int: """方法number_translator的辅助方法,可将[零-九]正确翻译为[0-9] :param s: 大写数字 :return: 对应的整形数,如果不是数字返回-1 """ return { "零": 0, "0": 0, "一": 1, "1": 1, "二": 2, "两": 2, "2": 2, "三": 3, "3": 3, "四": ...
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def get_flood_risk_rating(num): """Converts an integer value of a flood risk rating to the rating it represents - low (0/1), moderate (2), high (3), severe (4)""" if num == 0 or num == 1: return "Low" if num == 2: return "Moderate" if num == 3: return "High" if num == 4...
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def canSum(numbers, target, memo=None): """ Given a array of positive whole numbers, finds if there is a subarray whose sum equals the given target """ if memo == None: memo = dict() if target in memo: return memo[target] if target == 0: return True if target < 0: ...
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def hexline(data): """Convert a binary buffer into a hexadecimal representation""" LOGFILTER=''.join([(len(repr(chr(x)))==3) and chr(x) or \ '.' for x in range(256)]) src = ''.join(data) hexa = ' '.join(["%02x"%ord(x) for x in src]) printable = src.translate(LOGFILTER) ret...
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def _chain2dict(chain, v = 'newiban'): """Convert a block chain into dict. K-v pairs are alias-iban pairs :param v = newiban or newbank """ result = {} for block in chain: for trnx in block['transactions']: result[trnx['alias']] = trnx[v] return result
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def cross_compile(*args, **kwargs): """Compile the source string into a code object __future__ imports change the behavior of default compile function This function just provides the 'compile' free of __future__ imports """ return compile(*args, **kwargs)
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def autoparse(text): """ Guesse the type of a value encoded in a string and parses """ # int try: return int(text) except: pass # float try: return float(text) except ValueError: pass # string return text
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def calc_personal_check_digits(number): """Calculate the check digits for the 12-digit personal ИНН.""" weights = (7, 2, 4, 10, 3, 5, 9, 4, 6, 8) d1 = str(sum(w * int(n) for w, n in zip(weights, number)) % 11 % 10) weights = (3, 7, 2, 4, 10, 3, 5, 9, 4, 6, 8) d2 = str(sum(w * int(n) for w, n in zip(...
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def importobj(modpath, attrname): """imports a module, then resolves the attrname on it""" module = __import__(modpath, None, None, ["__doc__"]) if not attrname: return module retval = module names = attrname.split(".") for x in names: retval = getattr(retval, x) return retv...
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def abc1D (u, up, alpha, src): """ Absorbing Boundaries Condition based on hybrid scheme which is explained in [2]. If N=1, the method is the same as [1]. Parameter --------- ul = wavefield at time step t-1 u = wavefield at given time step t up = wavefield at time step t+1 (calculated wa...
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def get_channel(version: str) -> str: """Find channel based on version number.""" if "dev0" in version: return "dev" if "dev" in version: return "nightly" if "b" in version: return "beta" return "stable"
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from pathlib import Path def splitall(path): """ Split path into each part, top catalogue on top, filename (if included) last """ out = Path(path).parts return out
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