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import subprocess def cmd_run(cmd): """Shortcut for the long and winding subprocess call output decoder.""" return subprocess.run( cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, check=True).stdout.decode("utf-8")
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def section_break(qty: int=2) -> str: """Return multiple line break characters. :param int qty: number of line break characters (default: 2) :returns: multiple new line characters :rtype: str """ return '\n' * int(qty)
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def generate_sons(s): """ Gera os filhos possíveis para um determinado nó. :param s: o nó no qual terá seus filhos gerados. :return: lista de filhos que um nó possui. """ list_of_sons = [] # caminho da margem esquerda para a direita if s[2] == 1: if s[0] - 1 >= 0 and s[1] - 1 >= 0: ...
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def insert_or_ignore(session, model, **kwargs): """ adds data to specified table if data is found to exist in the table nothing is added parameters ---------- session: obj sqlalchemy session model : class name of table kwargs: dict values to be entered to the tab...
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def runIn(object:str, cmd): """ runIn(object, cmd) -> bool Execute commands with a given node/knob/field as the 'context'. This means that all names are evaluated relative to this object, and commands that modify 'this' node will modify the given one. @param object: Name of object. @param cmd:...
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import os def landbosse_test_input_dir(): """ This function is to find the input directory of the landbosse. This function checks to see if the LANDBOSSE_INPUT_DIR environment variable is defined. If so, it returns the value of that variable. If the environment variable is not defined, it return...
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def str_to_intfl(value): """ Cast to int/float or send back """ if not value: return value # i know... try: return_value = int(value) except ValueError: pass else: return return_value try: return_value = float(value) except ValueErro...
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import hashlib def get_hash(text): """Return a hash of the given text for use as an id. Currently SHA1 hashing is used. It should be plenty for our purposes. """ return hashlib.sha1(text.encode('utf-8')).hexdigest()
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def _select_class_label(top_k_rows, label_index): """ Gets the class label based on majority voting :param top_k_rows: a list in the form of [(dist, row),...] :param label_index: the index in the rows where the label is located :return: the most common label """ labels = [] for tuple in top...
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def test_acc(test_num): """Accuracy that we wish to probe with a particular test. """ if 0 <= test_num <= 3: return 'LL' return 'MLL'
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def ParallelCorFunction(nucleotide1, nucleotide2, phyche_index): """Get the cFactor.(Type1)""" temp_sum = 0.0 phyche_index_values = list(phyche_index.values()) len_phyche_index = len(phyche_index_values[0]) for u in range(len_phyche_index): temp_sum += pow( float(phyche_index[nuc...
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import os def log(parent_directory, name): """The path where training/testing/validation logs are stored.""" return os.path.join(parent_directory, '{}.log'.format(name))
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import os def load_spelling_ignore_file(): """ Loads file where words are defined that should be ignored - thus not be corrected - by LanguageTool """ file_path = os.path.join(os.path.dirname(__file__), "spelling_ignore.txt") spelling_ignore_list_file = open(file_path) spelling_ignore_list = [line.rs...
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def rotate3_inertia(RotMat,relInertia): """ Rotates an inertia tensor. A derivation of the formula in this function can be found in Crandall 1968, Dynamics of mechanical and electromechanical systems. This function only transforms an inertia tensor for rotations with respect to a fixed point. To tra...
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from typing import Union from typing import Tuple from typing import List def increase_version_number(version_buffer: Union[Tuple[int, int, int], List[int]]) -> List[int]: """ Increases the number of the version with an increment of 0.0.1. Args: version_buffer: (Union[Tuple[int, int, int], List[i...
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def default_params(): """ Return dict of default parameters. These can be set to different values in an input file by having a line of the form: ## parametername parametervalue e.g. ## missing_preferred_less False ## seed 3145 If the default value, set here, is equal to N...
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import math def get_num_elements(n): """Return the number of elements from the number of possible pairwise combinations. Essentially, the reverse of the previous function. We only consider the solution for [-b + sqrt(b^2 - 4ac)] for practical reasons. """ return int(1 + math.sqrt(1 + (8 * n))) //...
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import torch def weighted_binary_cross_entropy(sigmoid_x, targets, pos_weight, weight=None, size_average=True, reduce=True): """ Args: sigmoid_x: predicted probability of size [N,C], N sample and C Class. Eg. Must be in range of [0,1], i.e. Output from Sigmoid. targets: true value, one-hot-lik...
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def two_list_dictionary(keys, values): """Given keys and values, make dictionary of those. >>> two_list_dictionary(['x', 'y', 'z'], [9, 8, 7]) {'x': 9, 'y': 8, 'z': 7} If there are fewer values than keys, remaining keys should have value of None: >>> two_list_dicti...
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def walk_to_s(tree, pos): """ Takes the tree being searched and the position from which the walk up is started. Returns the position of the first S encountered and the path taken to get there from the dominating NP. The path consists of a list of tree positions. Args: tree: the tree bein...
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def digits(m) -> int: """Parses a phrase representing a digit sequence, returning it as an integer.""" return int(m.digit_string)
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import sys import os def getInstallPaths(install_file): """ Gets the paths needed to install environment variables onto a dcc. Args: install_file (string): Name of file used to write environment variables in dcc. Returns: (list): Install script as first value, piper directory as seco...
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def fedoralink_classes(obj): """ Get the original fedoralink classes of of a given object. They might be different to real classes (via getmro) because fedoralink autogenerates types when deserializing from RDF metadata/Indexer data. :param obj: an instance of FedoraObject :return: list of class...
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from datetime import datetime def yearmonth(value): """ Returns the input converted to a string in format YYYY-mm Args: value (datetime): date to convert Returns: output (str): formatted in YYYY-mm """ output = datetime.strftime(value, '%Y-%m') return output
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def smooth(cloud, radius=0.01): """ default radius for sampling is 1cm """ tree = cloud.make_kdtree() #create moving least squares settings mls = cloud.make_moving_least_squares() mls.set_Compute_Normals(True) mls.set_polynomial_fit(True) mls.set_Search_Method(tree) mls.set_sear...
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import requests def url_check(url): #Description """Boolean return - check to see if the site exists. This function takes a url as input and then it requests the site head - not the full html and then it checks the response to see if it's less than 400. If it is less tha...
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def rule_separation(value: float, layer1: str, layer2: str): """Min space between different layers""" error = f"min {layer1} {layer2} separation {value}um" return f"{layer1}.separation({layer2}, {value})" f".output('{error}', '{error}')"
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import re def text_case(line): """Return the text case (lower case, upper case, title case or none of them)""" is_title_case = True for word in line.split(): if len(word) > 4 and not word.startswith('(') and not word.startswith('['): is_title_case = is_title_case and (bool(re.match(r'^...
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from textwrap import dedent def txt(s: str) -> str: """ dedents a triple-quoted indented string, and strips the leading newline. Converts this: txt(''' hello world ''') into this: "hello\nworld\n" """ return dedent(s.lstrip("\n"))
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import re def _clean_xml(xml_string): """Replace invalid characters with "?". :type xml_string: str :arg xml_string: XML string :rtype: str :returns: valid XML string """ invalid_chars = re.compile(r'[\000-\010\013\014\016-\037]') return invalid_chars.sub('?', xml_string)
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import functools import warnings def remove_parameters(removed_params, reason, end_version='future'): """Decorator to deprecate but not renamed parameters in the decorated functions and methods. Parameters ---------- removed_params : list[string] ...
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def massprops(client, file_=None): """Get mass property information about a model. Notes: PTC's description of coord_sys_inertia: "The inertia matrix with respect to coordinate frame:(element ij is the integral of x_i x_j over the object)". PTC's description of coord_sys_inertia_tensor: "The in...
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def degseq_to_data(degree_sequence): """ Takes a degree sequence list (of Integers) and converts to a sorted (max-min) integer data type, as used for faster access in the underlying database. EXAMPLE:: sage: from sage.graphs.graph_database import degseq_to_data sage: degseq_to_data...
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def remaining(counts,player): """Calculates the sum of remaining opponent pieces""" remaining = 0 player_info = {"w": "wW@","b":"bB$"} for each in player_info["w" if player=="b" else "b"]: if each in counts.keys(): remaining+=counts[each] return remaining
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def pivot_smooth_norm(df, smooth_value, rows_variable, cols_variable, values_variable): """ Turns the pandas dataframe into a data matrix. Args: df (dataframe): aggregated dataframe smooth_value (float): value to add to the matrix to account for the priors rows_variable (str): name o...
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import numpy def referenceToSinglet(spectrum, ppm, peakRange): """ Find the highest point in the region indicated by the tuple of (*low bound*, *high bound*). Where all values in peakRange are identical behaviour is undefined. :param numpy.array spectrum: Vector of values representing the real part of the spect...
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def detect(code): """Detects if a scriptlet is urlencoded.""" # the fact that script doesn't contain any space, but has %20 instead # should be sufficient check for now. return ' ' not in code and ('%20' in code or code.count('%') > 3)
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def parse_voice_flags(flags): """Parses flags and returns a dict that represents voice playing state.""" # flags: [0-9]{8} if flags[0] == '0': return {'voice': 'stop'} else: return {'voice': { 'number': int(flags[1:3]), 'repeat': int(flags[4:6]) }}
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def _fill_attrs(da, pos, axis): """Replace comdo attributes according to pos and axis""" attrs = da.attrs attrs["axis"] = axis if pos == "center": attrs.pop("c_grid_axis_shift", None) elif pos in ["left", "outer"]: attrs["c_grid_axis_shift"] = -0.5 elif pos in ["right", "inner"]...
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def get_durations_by_song(song): """ Iterate over all labels for a given song to extract notes """ durations = {} for segment in song: # (start,end,(instrument,note,measure,beat,note_value)) duration = segment[2][4].decode('utf-8') if duration not in durations: ...
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import random def _SelectReviewer(possible_owners, used_reviewers): """Select a reviewer from |owners| and adds them to the set of used reviewers. Returns: The reviewer. """ # It's debatable whether we want to avoid reusing reviewers. It could be # easier to ask the smallest possible amount of reviewe...
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import argparse def parse_args(): """ Parse command line arguments """ parser = argparse.ArgumentParser(description='nsupdate-interactive') group = parser.add_mutually_exclusive_group(required=True) group.add_argument('--zone', type=str) group.add_argument('--get-zone-slug', type=str) parse...
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import warnings def deprecated(replaced_by_func): """ This decorator is used to mark functions as deprecated. It also points the user to the newer function that should be used instead. """ def wrap(f): def new_func(*args, **kwargs): warnings.simplefilter('always', DeprecationWa...
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def post(user, post_id): """User's post. .. :quickref: User; Save user id :param user: user login name :param post_id: post unique id :status 200: when user and post exists :status 404: when user and post doesn't exist """ return str(post_id), 'by', user
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from typing import Union import grp def gid2name(gid: Union[str, int]) -> str: """From the list of all groups return the name of gid""" return str(grp.getgrgid(int(gid)).gr_name)
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from pathlib import Path def enterprise_1_11_artifact() -> Path: """ Return the path to a build artifact for DC/OS Enterprise 1.11. """ return Path('/tmp/dcos_generate_config_1_11.ee.sh')
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def bb_filter_initial_features(bboxes, scores, features): """ Filter out elts of list that do not contain bbox """ bboxes_initial = [] scores_initial = [] features_initial = [] num_rois = len(scores) for roi_ind in range(num_rois): bboxes_roi = bboxes[roi_ind] if bboxes_r...
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def nocache(response): """Add Cache-Control headers to disable caching a response""" response.headers['Cache-Control'] = 'no-store, no-cache, must-revalidate, max-age=0' return response
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from typing import List def parse_pdv(text: str) -> List[List[str]]: """ Parse pipe delimited values. """ rows = [] lines = text.split('\n') for line in lines: row = [] cols = line.split('|') for col in cols: col2 = col.strip() row.append(col2)...
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def add_toc(txt): """Add github-style ToC to start of md content. """ lines = txt.split('\n') toc_lines = [] mindepth = None for line in lines: if not line.startswith('#'): continue parts = line.split() hashblock = parts[0] if set(hashblock) != set(...
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def checkLocator(subject: str, locator: int): """Returns False if the character at subject[locator] is not equal to its counterpart at subject[-locator-1]. locator is the zero starting index of the current character to be checked. This method recurs with incrementing locator until all characters in sub...
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import os import glob def find_counts_files(c): """Return a list of the counts files found in the supplied directory.""" cfiles = {} apath = os.path.abspath(os.path.expanduser(c)) for cf in glob.iglob(apath + '/**/*.counts'): sn = os.path.basename(cf).rstrip('.counts') cfiles[sn] = cf ...
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import os def check_file_name(file_name): """ Check For Existing Filename credit: lastro given: string containing file name. return: string with additional number if file already exists with given filename; otherwise returns original string. """ if os.path.isfile(file_name): expand =...
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def wall_dimensions(walls): """ Given a list of walls, returns a tuple of (width, height).""" width = max(walls)[0] + 1 height = max(walls)[1] + 1 return (width, height)
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import math def millify(n): """Abbreviate a number to nearest thousand, million, etc. Adapted from: https://stackoverflow.com/a/3155023/10696164 Parameters ---------- n : int The number to abbreviate Returns ------- millified : str The number abbreviated to the neare...
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def compile_create_table(qualified_name: str, column_statement: str, primary_key_statement: str) -> str: """Postgresql Create Table statement formatter.""" statement = """ CREATE TABLE {table} ({columns} {primary_keys}); """.format(table=qualified_name, ...
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def add_ax(fig, rect): """ 添加子图ax pos_x, pos_y 子图左下角位置 width, height 子图宽高 注意:pos_x, pos_y, width, height 都是百分比形式 """ return fig.add_axes(rect)
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def updateModulesIdList(campaign,m): """Updates the Modules ID list (main use is the argparse choices)""" modules_ids = [] for c in campaign: modules_ids.insert(len(modules_ids),c["id"]) if len(modules_ids) > 0 and m != "edit": modules_ids.insert(len(modules_ids),"all") return modul...
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def chunklistWithOverlap(inlist, size_per_chunk, overlap_per_chunk): """Convert list into a list of lists such that each element is a list containing a sequential chunk of the original list of length size_per_chunk""" assert size_per_chunk >= 1 and overlap_per_chunk >= 0 and size_per_chunk > overlap_per...
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def expression(s): """expression(s) -> float Parse a Nuke expression. Runs the same expression parser as is used by animations. This is not the same as the tcl expr parser. The main differences are: - Only floating point numbers are calculated. There are no strings, boolean, or integer values. - You can name any k...
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def insertionsort(list, descending=False): """ Takes in a list as an argument, and sorts it using an "Insertion Sort"-algorithm. --- Args: - list (list): The list to be sorted - descending (bool): Set true if the list be sorted high-to-low. Default=False Raises: - T...
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def GetArgsForMockCall(call_args_list, call_number): """Helper to more sanely get call args from a mocked method. Args: call_args_list: The call_args_list member from the mock in question. call_number: The call number to pull args from, starting at 0 for the first call to the method. Returns: ...
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import itertools def find_idx_common3b(i, list_kappa_idx, solution_idx): """ Find the scalar products for common function with 3 solution consecutive kappas. Parameters: i -- integer list_kappa_idx -- list solution_idx -- list of Decimal Return: common3b_idx -- list """ common3b_idx = [sublist f...
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import torch import math def perplexity_of(model, samples, batch_size): """ :param model: a modelModel instance. :param samples: a Samples instance. :param batch_size: an (unsigned) int - the batch size with which the model was trained. :returns: a float - the perplexity of the model on the gi...
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def exp2(x): """ Returns the 2 to the power of x of FuncInput object. Parameters ======= FuncInput object or real number Returns ======= FuncInput object with value based on exp(x) and gradients based on 2**x * log(2) * x' Examples ======= >>> x = FuncInput(np.array([2]),n...
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def pid2index(painting_df, painting_id): """From the painting ID, returns the index of the painting in the painting dataframe Input: painting_df: dataframe of paintings painting_list: list of paintings ID (e.g ['000-02T4-0000', '000-03WC-0000...']) Output: index_list: lis...
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def change_style(style, representer): """ This function is used to format the key value as a multi-line string maintaining the line breaks """ def new_representer(dumper, data): scalar = representer(dumper, data) scalar.style = style return scalar return new_representer
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import torch def load_checkpoint(model, resume_path, logger): """ Resume from saved checkpoints :param resume_path: Checkpoint path to be resumed """ logger.info("Loading checkpoint: {} ...".format(resume_path)) checkpoint = torch.load(resume_path) epoch = checkpoint['epoch'] mnt_best...
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def filter_transmission_events(selected_events, transmission_events): """Filter transmission_events for node-links of interest. :param selected_events: Specified organism_group-organism_group relationships inside nested dictionary. :type selected_events: dict[str, dict[str, None]] :param transmissi...
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async def raceclass() -> dict: """Create a mock raceclass object.""" return { "id": "290e70d5-0933-4af0-bb53-1d705ba7eb95", "name": "G16", "ageclass_name": "G 16 år", "order": 1, "event_id": "event_id_1", "distance": "5km", }
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from typing import Tuple import sysconfig import os def _find_executable_and_scripts(path: str) -> Tuple[str, str, str]: """ Detect the Python executable and script folder of a virtual environment. :param path: The location of the virtual environment :return: The Python executable, script folder, and...
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import os def skippable(func): """ Makes a function skippable. Saves the state before and after the function runs. Pass "skip=True" to the function to load the previous save state from when the function finished. """ def wrapped_function(*args, **kwargs): self = args[0] skip =...
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def bool_constructor(self, node): """ Args: node: Returns: """ value = self.construct_yaml_bool(node) return '$true' if value else '$false'
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import pandas def totalDuration( data, duration, id1, id2, verbose): """Extract the total duration of each query""" # making functions more explicit data = data duration = duration id1 = id1 id2 = id2 verbose = verbose to...
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import math def mach_angle(M): """Calculate the Mach angle :param <float> M: Mach # :return <float> Mach angle, mu """ return math.asin(1 / M)
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import socket def check_port(ip, port): """ check if port is in use """ s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) try: s.connect((ip, int(port))) s.shutdown(2) print("port is used", int(port)) return True except BaseException: return False
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def binarize_score(adata, score_label: str, threshold: float): """ Binarizes a provided key of an AnnData object by labeling values over a threshold as 'positive' or 'negative'. Args: adata: AnnData object to perform the binarization for score_label: Label in adata.obs which will be used fo...
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def _find_calframe(calframes, calpaths, values, calname, verbose=False): """ Find the calibration frame and path from given dicts for dict values. """ if calframes is None: calpath = None calframe = None else: try: calframe = calframes[values] calpath = ca...
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import sys def weights_from_config(config): """ Construct a layer from a configuration. Args: A dictionary configuration of the layer metadata. Returns: An object which is a subclass of 'Weights'. """ layer_obj = getattr(sys.modules[__name__], config["layer_type"]) retur...
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def recv_all(sock): """Receive data until connection is closed.""" data = b'' while True: chunk = sock.recv(1024) if not chunk: break data += chunk return data
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def rreplace(s, old, new, count): """ Replaces last occurance of something stackoverflow.com/questions/2556108/ """ return (s[::-1].replace(old[::-1], new[::-1], count))[::-1]
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def _remove_seen_ids(ctrl, id_set): """Iterates through each bounded id-range, and removes IDs seen""" partition_range = range(0, ctrl.config["partitions"]) unseen_ids = id_set.copy() for partition_idx in partition_range: lower_bound, upper_bound = ctrl.get_id_range_for_partition(partition_idx) ...
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def popis_pozici(pozice): """Popíše pozici pro lidi např: >>> popis_pozici(0, 0) 'a1' """ radek, sloupec = pozice return "abcdefgh"[sloupec] + "12345678"[radek]
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def full_class(obj): """The full importable path to an object's class.""" return type(obj).__module__ + '.' + type(obj).__name__
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def scale_data(Data,cscale,dscale,scaledown = True): """ Returns scaled data on both columns Parameters ---------- Data: ndarray() Array of data to be scaled scaledown: bool determines if data is scaled down or up cscale: float how much to multiply column 1 by ds...
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def _normalize_input_name(input_name): """Remove :i suffix from input tensor names.""" return input_name.split(":")[0]
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import sys def _canonicalizePath(path): """ Support passing in a pathlib.Path-like object by converting to str. """ if sys.version_info[0] >= 3: return str(path) else: # On earlier Python versions, str is a byte string, so attempting to # convert a unicode string to str wil...
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def getitemdata(data): """Populates global itemdata with next item ID data from queue """ itemdata = {} if data is not None: itemLevel = -1 requiredLevel = -1 if "itemLevel" in data: itemLevel = data["itemLevel"] if "requiredLevel" in data: requir...
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def register_dictionary(nickname, email, password='default acceptable password', repeat_password='default acceptable password'): """creates the dictionary that can be used for registration""" return dict(nickname=nickname, email=email, password=password, repeat_password=repeat_password)
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def rectangles_circum(n: int): """Return `n` fixed circumference rectangles, w + h = n""" output = list() for i in range(1, n + 1): output.append((i, n - i + 1)) output.sort(key=lambda x: x[1], reverse=True) return output
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import os def check_ping(hostname): """Run ping and return 1 if success""" attempts = 1 response = os.system("ping -c {} {} >/dev/null".format(attempts, hostname)) # and then check the response... if response == 0: # Network is active return attempts return 0
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def motion_dollar(input_line, cur, count): """Go to end of line and return position. See Also: `motion_base()`. """ pos = len(input_line) return pos, False, False
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import hashlib def checksum_md5(filename): """computes MD5 for a file @param filename filename @return string or None if there was an error """ fname = filename block_size = 0x10000 fd = open(fname, "rb") try: block = [fd.read(block_size)] ...
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def check_is_user_owner_of_plant(user, target_rich_plant): """Check if user is owner of Rich plant""" if user.id == target_rich_plant.owner: return True else: return False
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def make_connection(conn, input_only_nodes, output_only_nodes, find_wire, find_pip, find_connector, tile_name, loc, tile_type, pip, switch_pkey): """ Attempt to connect graph nodes on either side of a pip. Args: conn (sqlite3.Connection): Routing database input_only_nodes (set o...
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def pullColumnAll(cursor, ticker, column_name): """ Retrieves specific column data for the given parameter (column_name) Arguments: cursor: cursor object for the database ticker: ticker for which we are collecting data column_name: specific column we want data from Returns: ...
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import re def regex_search(regex, text): """ Do regular expression search for text. :param regex: Regular expression for search, if none then disabled :param text: Text where to search :return: True if search finds something or regex is None """ if regex: return re.search(regex, t...
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import argparse def parseArgs(): """ Parsing and returning arguments """ # Definition of arguments descr = "Feed VS result data (however many files), plots ROC curves or" \ " Enrichment curves" descr_title = "Provide a title for the graph, also used as filename" descr_results = "P...
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import re def UpdateVerityTable(table, hash_offset): """Update the verity table with correct hash table offset. Args: table: the verity hash table content hash_offset: the hash table offset in sector (each sector has 512 bytes) Returns: updated verity hash table content """ find_offset = re.c...
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def read_lines(txt_name=""): """return the text in a file in lines as a list """ txt_name="./intermediate_file/detect_result/txt/"+txt_name f = open(txt_name,'rU') return f.readlines()
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