content stringlengths 22 815k | id int64 0 4.91M |
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def std_of_displacements(stops, distf=lambda a, b: geodesic(a, b).meters):
"""
Compute standard deviation of displacements feature from stops.
The standard deviation of distances between subsequent stops.
:param stops: dataframe of stops.
:param distf: distance function of the form: ((lat, lon),(l... | 5,304,800 |
def main(args):
"""The main process of profile-based features.
:param args: an object of the arguments.
"""
file_list = args.inputfiles
label_list = args.labels
output_format = args.f
if len(file_list) == 0:
print 'Input files not found.'
return False
if outpu... | 5,304,801 |
def test_lead():
"""Can get leading values with function"""
df = tp.Tibble({'x': range(3)})
actual = df.mutate(lead_null = tp.lead(col('x')),
lead_default = tp.lead('x', default = 1))
expected = tp.Tibble({'x': range(3),
'lead_null': [1, 2, None],
... | 5,304,802 |
def class_amount(data_amount: int) -> int:
"""Compute class amount (k) of a data size"""
return ceil(1 + 3.3 * log10(data_amount)) | 5,304,803 |
def step_impl_my_open_threads_count_are_counted_by_ru(context, business_id):
"""access the messages_count endpoint to get the count of my unread conversations"""
url_args = f"?is_closed=false&my_conversations=true&business_id={business_id}"
_step_impl_get_threads_count(context, url_args) | 5,304,804 |
def _wrap_coord(tensors):
"""wrap positions to unit cell"""
cell = tf.gather_nd(tensors['cell'], tensors['ind_1'])
coord = tf.expand_dims(tensors['coord'], -1)
frac_coord = tf.linalg.solve(tf.transpose(cell, perm=[0, 2, 1]), coord)
frac_coord %= 1
coord = tf.matmul(tf.transpose(cell, perm=[0, 2,... | 5,304,805 |
def save_data(df, database_filename):
"""
Input:
1. df: the cleaned dataframe, which is generated by the clean data function
2. database_filename: name of the database file
Output:
Saved database file
Process:
1. Create engine for saving dataframe
2. Use ... | 5,304,806 |
def two_linear_model_loss_regularized_dy1dx_lp(w0, w1, x, y, reg_coeff,
norm_type):
"""Penalize by ||dy1/dx||, optimal when first layer is fixed."""
dy1_dx_f = jax.grad(two_linear_model_y1_mean, argnums=2)
dy1_dx = dy1_dx_f(w0, w1, x)
loss = two_linear_model_loss(w... | 5,304,807 |
def register_type(implementation, rdtype, rdtype_text, is_singleton=False,
rdclass=dns.rdataclass.IN):
"""Dynamically register a module to handle an rdatatype.
*implementation*, a module implementing the type in the usual dnspython
way.
*rdtype*, an ``int``, the rdatatype to register... | 5,304,808 |
def test_statuses(get_resource_status: MagicMock):
"""Should execute statuses on bundle resources."""
bundle = kuber.from_file(os.path.join(MY_DIRECTORY, "test-get.yaml"))
bundle.statuses()
assert get_resource_status.call_count == len(bundle.resources) | 5,304,809 |
def test_generic_ansible():
"""
Scenario: Given valid arguments, mock events from ansible-runner, ensure context/readable output matches expectations
Given:
- valid host args for single windows host 123.123.123.123
- valid username / password
- command win-audit-policy-system
- args subcate... | 5,304,810 |
def mask_elon(aia_cumul8, hmi_dat):
"""
Masking for elongation algorithm.
Parameters
----------
aia_cumul8 : list
Cumulative ribbon masks, c=8.
hmi_dat : list
SDO/HMI image data for flare.
Returns
-------
aia8_pos_2 : list
Contains only the positive cumulati... | 5,304,811 |
def _validate_pad(padtype, padlen, x, axis, ntaps):
"""Helper to validate padding for filtfilt"""
if padtype not in ['even', 'odd', 'constant', None]:
raise ValueError(("Unknown value '%s' given to padtype. padtype "
"must be 'even', 'odd', 'constant', or None.") %
... | 5,304,812 |
def generate_fc2_filedata(filepath_tests):
"""Generate a `SinglefileData` instance with fc2.hdf5 file."""
def _generate_fc2_filedata(structure_id: str = "NaCl-64"):
if structure_id == "NaCl-64":
filepath = os.path.join(
filepath_tests,
"parsers",
... | 5,304,813 |
def get_supported_languages():
"""Return the list of supported language.
"""
if getattr(PARSER, 'filename', None):
return list(sorted(lang for lang in PARSER.sections()))
return list(sorted(DEFAULT.keys())) | 5,304,814 |
def createCFileBuilders(env):
"""This is a utility function that creates the CFile/CXXFile
Builders in an Environment if they
are not there already.
If they are there already, we return the existing ones.
This is a separate function because soooo many Tools
use this functionality.
The ret... | 5,304,815 |
def get_requirements(integration: Integration, packages: set[str]) -> set[str]:
"""Return all (recursively) requirements for an integration."""
ensure_cache()
all_requirements = set()
to_check = deque(packages)
while to_check:
package = to_check.popleft()
if package in all_requir... | 5,304,816 |
def timestr_mod24(timestr):
"""
Given a GTFS HH:MM:SS time string, return a timestring in the same
format but with the hours taken modulo 24.
"""
try:
hours, mins, seconds = [int(x) for x in timestr.split(":")]
hours %= 24
result = "{:02d}:{:02d}:{:02d}".format(hours, mins, s... | 5,304,817 |
def set_ext_api(file_path):
"""Smart Function to set Extension."""
ext = file_path.split('.')[-1]
if ext == 'plist':
return 'plist'
elif ext == 'xml':
return 'xml'
elif ext in ['sqlitedb', 'db', 'sqlite']:
return 'db'
elif ext == 'm':
return 'm'
else:
... | 5,304,818 |
def gen_ipc_path(base_mac, pipe) -> Path:
"""
Builds a path that should represent some RX pipe
"""
base_path = Path("/tmp/ripple_ipc/rx")
base_path.mkdir(exist_ok=True)
return _gen_ipc_path(base_path, base_mac, pipe) | 5,304,819 |
def _get_cert_dates(pem_cert):
"""Returns the dates in the cert"""
cert = x509.load_pem_x509_certificate(pem_cert.encode(), default_backend())
logger.debug(
"Certificate with serial '%s', has not before: '%s' and not after: '%s' (UTC)",
cert.serial_number,
cert.not_valid_before,
... | 5,304,820 |
def animations():
"""animations() -> tuple
Returns a list of animatable things the user wants to work on.
If this is a command being executed from a menu item in a curve editor, a list of the names of all selected curves is returned. If this list is empty a "No curves selected" error is produced.
If this is a comm... | 5,304,821 |
def updateByManifest(path, dryRun=False):
"""
Attempts to update only the recently updated datafiles by using a manifest file.
Returns False if updating failed and a full update should be performed;
returns True if updating was a success.
"""
say("Updating via manifest...")
say("Gathering l... | 5,304,822 |
def toggle_language(n_clicks, target_lang):
"""
Toggles the language between English and Chinese.
Args:
n_clicks (int): Number of times the button has been clicked.
target_lang (str): The target language to change to (children attribute of #toggle-language element)
"""
if target_lan... | 5,304,823 |
def create_handler(event, context):
"""
Called when CloudFormation custom resource sends the create event
"""
return create_processing_job(event) | 5,304,824 |
def finish_multiplier():
"""Starts at 1.5x in the middle of the grid, increases to linearly to 2x for 1st and last place."""
multiplier_floor = 1.15
current_position = ir.car_position()
grid_size = ir.field_size()
mid_positions = grid_size/2
if grid_size % 2 == 1:
mid_positions = [mid_p... | 5,304,825 |
def combined_roidb(split, task, num_im, num_val_im):
"""
Combine multiple roidbs
"""
imdb = get_vg_imdb(split, task, num_im, num_val_im)
print('Loaded dataset `{:s}` for training'.format(imdb.name))
roidb = get_training_roidb(imdb)
return imdb, roidb | 5,304,826 |
def gen_payment_op(
dest: xdr_type.AccountID, src: Optional[xdr_type.AccountID] = None,
amount: int = 10
) -> xdr_type.Operation:
"""Generate a payment operation.
"""
body = xdr_pack.nullclass()
body.type = xdr_const.PAYMENT
body.paymentOp = xdr_type.PaymentOp(
destination=dest,
... | 5,304,827 |
def _get_copyrights_from_files(license_files):
"""
Get all of the copyright notifications from a list of files.
"""
copyright_notices = []
for license_file in license_files:
# If the license_file is a folder, skip it
if not os.path.isfile(license_file):
continue
#... | 5,304,828 |
def get_affine_transform(center, scale, rot, output_size, shift=np.array([0, 0], dtype=np.float32), inv=False):
"""
adapted from CenterNet: https://github.com/xingyizhou/CenterNet/blob/master/src/lib/utils/image.py
center: ndarray: (cx, cy)
scale: (w, h)
rot: angle in deg
output_size: int or (w,... | 5,304,829 |
def hostip(req=None, black_list=None, pref_list=None, logger=None):
"""
Look up the ip number for a given requested interface name.
If interface is not given, do some magic.
"""
# we only determine hostip once
global _hostip
if _hostip:
return _hostip
# List of interfaces that ... | 5,304,830 |
def test_sgf(filename):
"""Parses a sgf file to a game dict.
Args:
filename: str, path of the sgf file
Returns:
None if one of these to Errors occurs:
* sgf contains no moves, affects about 1% of files in KGS dataset
* move in the sgf breaks the minigo ko rule, affects about... | 5,304,831 |
def dtex_cii_1(tcii, tau_cii, tbg):
"""
"""
return np.power(tex_cii(tcii, tau_cii, tbg), 2.) * 1./(1 + tstar*(1. - np.exp(-tau_cii))/(tcii + J(tbg))) | 5,304,832 |
def test_async_dump_bin():
"""
Feature: async dump on Ascend in npy format
Description: test async dump with file_format = "bin"
Expectation: dump data are generated as protobuf file format (suffix with timestamp)
"""
run_async_dump("test_async_dump_bin") | 5,304,833 |
def get_pragma_spec(source: str) -> Optional[NpmSpec]:
"""
Extracts pragma information from Vyper source code.
Args:
source: Vyper source code
Returns: NpmSpec object or None, if no valid pragma is found
"""
pragma_match = next(re.finditer(r"(?:\n|^)\s*#\s*@version\s*([^\n]*)", source), ... | 5,304,834 |
def git_log(start, end, workingdir=None):
"""Run a ``git log`` command that will provide a nicely formatted list of
commits between ``start`` and ``end`` times. If ``workingdir`` is provided,
change to that directory before running the command."""
if workingdir:
olddir = os.getcwd()
os.c... | 5,304,835 |
def parse_time(input_time):
"""Parse an Atom time stamp."""
parsed = None
try:
parsed = timezone.make_aware(timezone.datetime(*input_time[:-3]),
timezone.utc)
except (pytz.NonExistentTimeError, pytz.AmbiguousTimeError):
added_hour = (timezone.datetime... | 5,304,836 |
def run_and_save_simulation(
n_agents, parameter_market, parameter_deviation, super_star_tuples
):
"""
Load the needed data, run the simulation and save the simulation
data.
Args:
n_agents (integer): Number of agents in the markets.
parameter_market (dict): Explained somewhere else ... | 5,304,837 |
def test_multi_mws_preserve_order(client: FlaskClient):
"""test Router.route with multiple middlewares (order preserving)"""
resp = client.post('/multi-mws')
assert resp.status_code == 401
assert not resp.json.get('success')
assert resp.json.get('message') == 'unauthorized access' | 5,304,838 |
def test_check_messages(load_mock, forward_mock, mark_mock, reply_mock, settings_mock):
"""
Messages should be forwarded evenly across recipients.
"""
# Arrange
messages = MESSAGES_RESPONSE['value']
settings_mock.FORWARD_TO = [
('Bender', 'bender@planetexpress.com'),
('Zoidberg',... | 5,304,839 |
def add_solution(
respy_obj,
periods_rewards_systematic,
states_number_period,
mapping_state_idx,
periods_emax,
states_all,
*args,
):
"""Add solution to class instance."""
respy_obj.unlock()
respy_obj.set_attr("periods_rewards_systematic", periods_rewards_systematic)
respy_ob... | 5,304,840 |
def sinusoid(t,A,P,phi,offset):
"""
A simple sinusoid model
"""
return A*np.sin(2.*np.pi*t/P + phi)+offset | 5,304,841 |
def sanitize_bucket_and_host(bucket):
# type: (str) -> Tuple[str, str]
"""
if bucket is in following format : 'xxx.amazonaws.com/bucket_name',
Returns a 2-values tuple ('bucket_name', 'xxx.amazonaws.com')
"""
# first case: we got a "<host>/<bucket_name>" input
if "/" in bucket:
host,... | 5,304,842 |
def _compute_embedding_grad_sample(
layer: nn.Embedding, A: torch.Tensor, B: torch.Tensor, batch_dim: int = 0
) -> None:
"""
Computes per sample gradients for ``nn.Embedding`` layer
Parameters
----------
layer : nn.Embedding
Layer
A : torch.Tensor
Activations
B : torch.T... | 5,304,843 |
def test_recordmodel(mock_program_dao):
"""Get a record model instance for each test function."""
dut = mock_program_dao.do_select_all(RAMSTKMechanismRecord, _all=False)
yield dut
# Delete the device under test.
del dut | 5,304,844 |
def config_to_file():
"""Outputs the current configuration in .arc file format"""
config_items = [
[name, getattr(config, name)]
for name in Config.__dataclass_fields__ # pylint: disable=no-member
]
print("\n".join(f"{name}={value}" for name, value in config_items)) | 5,304,845 |
def move_roles_to_base_role_config_group(resource_root, service_name,
role_names, cluster_name="default"):
"""
Moves roles to the base role config group.
The roles can be moved from any role config group belonging to the same
service. The role type of the roles may vary. Each role will be moved to
its c... | 5,304,846 |
def stamp_allowing_unusual_version_table(
config: Config,
revision: str,
sql: bool = False,
tag: str = None,
version_table: str = DEFAULT_ALEMBIC_VERSION_TABLE) -> None:
"""
Stamps the Alembic version table with the given revision; don't run any
migrations.
This ... | 5,304,847 |
def when(*contexts: Context):
"""Returns a function wrapper.
A function decorated with `when` will exit early if any supplied context in `contexts` is active.
The first supplied context to block will be reported as a message.
Consider supplying permanent conditions first.
For example, to block a function wh... | 5,304,848 |
def color_wipe(unused_addr, red, green, blue, wait_ms=3):
"""Wipe color across display a pixel at a time."""
logger.info(f'Color {red} {green} {blue}')
color = Color(red, green, blue)
for i in range(strip.numPixels()):
strip.setPixelColor(i, color)
strip.show()
time.sleep(wait_ms... | 5,304,849 |
def read(filename: PathLike, **kwargs) -> Union[MuData, AnnData]:
"""
Read MuData object from HDF5 file
or AnnData object (a single modality) inside it
This function is designed to enhance I/O ease of use.
It recognises the following formats:
- FILE.h5mu
- FILE.h5mu/MODALITY
- FIL... | 5,304,850 |
def bash():
"""bash commands group."""
pass | 5,304,851 |
def group_nodes(graph: ModuleGraph) -> Iterator[Tuple[str, str, Sequence[BaseNode]]]:
"""
Detect groups of reachable nodes in the graph.
This function groups nodes in two ways:
- Group all nodes related to a particular distribution
- Group all nodes in the same stdlib package
Args:
graph... | 5,304,852 |
def rename_local_repo(old, new, project):
"""
Renames local repositories:
- Rename the git dir
- Change remote origin (svn or git)
- Change commit notification ML
- Change PR notification ML
"""
# First, rename the dir on the box. Fall flat on our behind if this fails.
... | 5,304,853 |
def highlight_regex(str_, pat, reflags=0, color='red'):
"""
FIXME Use pygments instead
"""
import re
matches = list(re.finditer(pat, str_, flags=reflags))
colored = str_
for match in reversed(matches):
start = match.start()
end = match.end()
colored_part = ub.color_te... | 5,304,854 |
def get_environment(env_name: str) -> Environment:
"""
Get environment for given env name
:return: Environment or None
"""
_check_active_client()
envs = _merlin_client.list_environment() # type: ignore
for env in envs:
if env.name == env_name:
return env
return None | 5,304,855 |
def cluster_otus(workflow, method, fasta_file, reference_fasta, output_folder):
""" Cluster the otus with usearch
Args:
workflow (anadama2.workflow): an instance of the workflow class.
method (string): tools for sequence analysis - usearhc(default) or vsearch
fasta_file (string): th... | 5,304,856 |
def __add_dhcpd_file(subnet_list):
"""
to generate local dhcpd.conf file
"""
print" "
logger.info("addDhcpdFile function")
common_str = """
ddns-update-style none;
default-lease-time 1600;
max-lease-time 7200;
authoritative;
log-facility local7;
allow booting;
allow bootp;
option option-... | 5,304,857 |
def get_mirtarbase():
"""Get generic mirtarbase entry."""
return _get_data(mirtarbase.Mirtarbase) | 5,304,858 |
def build_postprocessor():
"""Build the default postprocessors."""
processor = PostProcessor()
# processor.reg.add(function, name, priority)
return processor | 5,304,859 |
def mod(source):
"""Create kernel module shared among multiple tests."""
return source.get_module_for_symbol("snd_request_card") | 5,304,860 |
def load_data(data_file, one_hot: bool = True, one_hot_dim: int = None, code_map=None):
# TODO: remove the radii selection lines
# TODO: Currently the one-hot encoding is done in memory all at once. Potentially it needs to be moved to a custom DataLoader like ExpertTrajectory above
"""For Arash's format
... | 5,304,861 |
def getAvailableTimesOnDate(client, date):
"""Function that first loads the page for a date and then returns the list of free time slots on that day."""
loadDate(client, date)
return getAvailableTimes(client.html) | 5,304,862 |
def show_main_colors(main_colors: np.ndarray):
"""Plot main colors
Args:
main_colors (np.ndarray): Main colors
"""
_, axes = plt.subplots(1, len(main_colors), figsize=(15, 2))
for k in range(len(axes)):
axes[k].imshow([[np.mean(main_colors, axis=2)[k] / 256]])
axes[k].set_ax... | 5,304,863 |
def run_gui(sim):
"""
Encapsulate frame
"""
gui = ApocalypseGUI(sim)
gui.start() | 5,304,864 |
def make_utf8(x):
"""Encode a string as UTF8
Respect both python2 and python3."""
if isinstance(x, six.text_type):
return x
elif isinstance(x, six.binary_type):
return x.decode('utf8')
else:
raise ValueError('Expected string type, got type %s' % str(type(x))) | 5,304,865 |
def forward_step(data_iterator, model, input_tensor):
"""Forward step."""
args = get_args()
timers = get_timers()
# Get the batch.
timers('batch-generator').start()
query_tokens, query_mask, \
context_tokens, context_mask, context_indices = get_ict_batch(data_iterator)
timers('batch-gen... | 5,304,866 |
def load_savedmodel(savedmodel_dir: str) -> Tuple[tf.compat.v1.Session, Dict[str, any]]:
"""
Loads a Lobe exported Tensorflow SavedModel and returns the session with the model loaded and our
signature file.
"""
# make sure our exported SavedModel folder exists
model_path = os.path.realpath(savedmodel_dir)
if not... | 5,304,867 |
def main():
"""
Função principal.
A função somente faz chamadas á outras funções.
"""
valor_area = float(input('Área(m²): '))
__calcula_quantidade_tinta(area=valor_area) | 5,304,868 |
def recorder(event_loop) -> AsyncAWSXRayRecorder:
"""An X-Ray recorder with local-only, stubbed, segment collection."""
xray_recorder = get_new_stubbed_recorder()
xray_recorder.configure(
service="test", sampling=False, context=AsyncContext(loop=event_loop)
)
with patch("xraysink.asgi.middl... | 5,304,869 |
def _join_subpath(root: Path, source: Union[str, Path],
destination: Path) -> Path:
"""
Appends to destination, source-relative path to root.
Written for use with os.walk() to match subfolders during walk.
For example:
root = 'R:/Documents/School/Math
source = 'R:/Docum... | 5,304,870 |
def makepath(subsystem, group, pseudofile=None):
"""Pieces together a full path of the cgroup.
"""
mountpoint = _get_mountpoint(subsystem)
group = group.strip('/')
if pseudofile:
return os.path.join(mountpoint, group, pseudofile)
return os.path.join(mountpoint, group) | 5,304,871 |
def srt_formatter(subtitles, padding_before=0, padding_after=0):
"""
Serialize a list of subtitles according to the SRT format, with optional time padding.
"""
sub_rip_file = pysrt.SubRipFile()
for i, ((start, end), text) in enumerate(subtitles, start=1):
item = pysrt.SubRipItem()
it... | 5,304,872 |
def file_copy(file_path_source, file_path_destination):
"""Copies a file from `file_path_source` to `file_path_destination`"""
copyfile(file_path_source, file_path_destination) | 5,304,873 |
def are_in_same_quarter(first: datetime.date, second: datetime.date) -> bool:
"""Find out if two dates are in the same quarter.
Args:
first (datetime.date): The first date.
second (datetime.date): The second date.
Returns:
bool: True if the dates aare in the same quarter.
"""
... | 5,304,874 |
def get_plot_colours(n: int = 10, colourmap: Optional[str] = None) -> List[Tuple[float]]:
"""
Return iterable list of RGB colour values that can be used for custom plotting functions
Returns a list of RGB colours values, potentially according to a specified colourmap. If n is low enough, will use
the c... | 5,304,875 |
def get_output_file_globbing_template(output_dir: Path, file_prefix: str, file_suffix: str) -> Path:
"""
Returns a canonical path with the given parameters where the start and end times are replaced with a globbing
expression (?).
:param output_dir: the path for the globbing expression
:param file_... | 5,304,876 |
def evaluate_reaction_rate(results, cell, nuc, rxn):
""" Evaluates a single nuclide reaction rate in a single cell from a results list.
Parameters
----------
results : list of Results
The results to extract data from. Must be sorted and continuous.
cell : str
Cell name to evaluate
... | 5,304,877 |
def roundFloatsInDict(data, decimals):
"""Recursively rounds all floats in the dictionary to the specified decimal digits.
If a float value is smaller than 10e-decimals it is set to zero.
Args:
data(dict): data dictionary
decimals(int): number of decimals floats should be rounded to
R... | 5,304,878 |
def _get_vuln_info_from_cve(full_cve):
"""Return the vulnerable configurations of operating system and
software for a given CVE.
Args:
full_cve (dict): Full CVE data as a JSON dictionary from API call.
Returns (dict, dict): ({os: [version,]}, {software: [version,])
"""
vulnerable_confi... | 5,304,879 |
def toggle_results_visible(session, context, poll):
"""Change the results visible settings of a poll."""
if poll.created:
return i18n.t('callback.poll_already_created', locale=context.user.locale)
poll.results_visible = not poll.results_visible
open_anonymization_settings(context.query.message... | 5,304,880 |
def fnCalculate_DatetimeEpoch(timevec, index, timestamp):
"""
Find the datetime object for the time index.
Created: 24 May 2017 in testepochfunc.py
Edited:
29.08.17: Commented out everything, better to use datetime methods.
As set up originally, results would be im... | 5,304,881 |
def fetchFTPURL(remote_file:URIType, cachedFilename:AbsPath, secContext:Optional[SecurityContextConfig]=None) -> Tuple[Union[URIType, ContentKind], List[URIWithMetadata]]:
"""
Method to fetch contents from ftp
:param remote_file:
:param cachedFilename:
:param secContext:
"""
parsedInpu... | 5,304,882 |
def plot_prediction(args: dict, index: int):
"""
Plots image located at <index> in dataset found in <args.folder> and prints
the true and predicted labels.
:param args: Dictionary of training specifications detailed in main.py.
:param index: Index of image data to plot.
:return: None
"""
... | 5,304,883 |
def compute_stage4(lon, lat, year):
"""Build a daily dataframe for the stage4 data"""
nc = netCDF4.Dataset("/mesonet/data/stage4/%s_stage4_hourly.nc" % (year,))
lons = nc.variables["lon"][:]
lats = nc.variables["lat"][:]
dist = ((lons - lon) ** 2 + (lats - lat) ** 2) ** 0.5
(yidx, xidx) = np.unr... | 5,304,884 |
def celery_place_order(data, staff_id):
"""使用Celery + djcelery实现快递异步下单
使用djcelery可以在任务中方便的直接操作Django数据库，
而且最终的任务可以在Django的后台中查看和修改相关的任务"""
# 创建快递操作对象
express = ProjectExpress()
result = express.place_order(request_data=data)
if result.get('Success'):
ExpressInfo.objects.create(
... | 5,304,885 |
def measure_torsion_angles(residues):
"""Calculates the dihedral angles for a list of backbone atoms.
Parameters
----------
residues : [ampal.Residue]
List of `Residue` objects.
Returns
-------
torsion_angles : (float, float, float)
One triple for each residue, containing t... | 5,304,886 |
def constant_time_compare(x, y):
"""
Compares two byte strings in a way such that execution time is constant
regardless of how much alike the input values are, provided that they
are of the same length.
Comparisons between user input and secret data such as calculated
HMAC values needs to be ex... | 5,304,887 |
def check_epic_key (db, cl, nodeid, new_values) :
""" Ensure that the epic_key matches the format of keys in Jira
"""
if 'epic_key' in new_values :
r = re.compile (r'^[A-Z][0-9A-Z_]+[0-9A-Z]-[0-9]+$')
k = new_values ['epic_key']
if k is not None and not r.search (k) :
epi... | 5,304,888 |
def get_objective_sbml_fbc_ids(model_source):
""" Get the SBML-FBC id of the active objective
Args:
model_source (:obj:`str`): path to model
Returns:
:obj:`tuple`:
* :obj:`str`: SBML-FBC id of the active objective
* :obj:`list` of :obj:`str`: SBML-FBC id of the obj... | 5,304,889 |
def isNOAAACE(filename):
"""
Checks whether a file is NOAA ACE format.
"""
try:
tempf = open(filename, 'rt')
temp1= tempf.readline()
temp2= tempf.readline()
temp3= tempf.readline()
except:
return False
try:
if not temp1.startswith(':'):
... | 5,304,890 |
def uiNewRadioButtons():
"""
Creates a new radio buttons.
:return: uiRadioButtons
"""
clibui.uiNewRadioButtons.restype = ctypes.POINTER(uiRadioButtons)
return clibui.uiNewRadioButtons() | 5,304,891 |
def gradient_binarizing_scalers(grads_and_vars, clip_factor):
""" Get the scalers."""
gradients, variables = zip(*grads_and_vars)
scalers = []
for gradient in gradients:
if gradient is None:
scalers.append(None)
continue
if (clip_factor > 1.0e-5):
mea... | 5,304,892 |
def test_connect_to_broker():
"""Test that our broker connection is working fine.
This doens't need to run in a RasPi.
"""
client, connection = connect_to_broker(
client_id='test_client',
host=HOST,
port=PORT,
keepalive=KEEPALIVE
)
assert client is not None
as... | 5,304,893 |
def cov_spk_ker(spk, object=False, time_format='TDB', support_ker ='',
report=False, unload=True):
"""
Provides time coverage summary for a given object for a given SPK file.
Several options are available. This function is based on the following
SPICE API:
http://naif.jpl.nasa.gov/p... | 5,304,894 |
def _str2bool(string):
"""Converts either 'true' or 'false' (not case-sensitively) into a boolean."""
if string is None:
return False
else:
string = string.lower()
if string == 'true':
return True
elif string == 'false':
return False
else:
raise ValueError(
'String should either... | 5,304,895 |
def _get_alpha_bar_from_time(t):
"""
Noise scheduling method proposed by Nichol et. al to avoid too noisy image especially for smaller resolution.
This strategy creates beta as follows:
alpha_bar(t) = f(t) / f(0)
f(t) = cos((t / T + s) / (1 + s) * PI / 2) ** 2
beta(t) = 1 - alpha_ba... | 5,304,896 |
def decrementAny(tup):
""" the closest tuples to tup: decrementing by 1 along any dimension.
Never go into negatives though. """
res = []
for i, x in enumerate(tup):
if x > 0:
res.append(tuple(list(tup[:i]) + [x - 1] + list(tup[i + 1:])))
return res | 5,304,897 |
def _delete_folder(path):
"""Internal method which won't trigger the callback"""
with fslock:
if os.path.exists(path):
shutil.rmtree(path) | 5,304,898 |
def mock_open(mock=None, read_data=''):
"""
A helper function to create a mock to replace the use of :func:`open()`. It
works for :func:`open()` called directly or used as a context manager.
:param mock: mock object to configure, by default
a :class:`~asynctest.MagicMock` object is
... | 5,304,899 |
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