Datasets:

---

bilalahmad176176

/

BrainAge-Raw-Files

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 4 new columns ({'age_at_scan', 'dx_group', 'participant_id', 'site'}) and 12 missing columns ({'chronological_age', 'age_years', 'file_path', 'age_label_type', 'notes', 'modality', 'golden_path', 'brain_age', 'subject_id', 'split', 'healthy', 'dataset'}).

This happened while the csv dataset builder was generating data using

hf://datasets/bilalahmad176176/BrainAge-Raw-Files/provenance/ABIDEII_combined_phenotypic.csv (at revision de4230a92188b589eaca8c9bb45d0041377317cd), [/tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/manifest.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/manifest.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ABIDEII_combined_phenotypic.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ABIDEII_combined_phenotypic.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ADHD200_combined_phenotypic.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ADHD200_combined_phenotypic.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-10_ABIDE-I_phenotypic.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-10_ABIDE-I_phenotypic.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-1_BCP_meta.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-1_BCP_meta.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-2_Calgary_manifest.tsv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-2_Calgary_manifest.tsv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-5_PTBP_demographics.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-5_PTBP_demographics.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-7_MPI-Leipzig_participants.tsv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-7_MPI-Leipzig_participants.tsv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-8_AOMIC_participants.tsv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-8_AOMIC_participants.tsv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/MIVAC_participants.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/MIVAC_participants.csv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2281, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2227, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              site: string
              participant_id: int64
              age_at_scan: double
              sex: int64
              dx_group: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 834
              to
              {'dataset': Value('string'), 'subject_id': Value('string'), 'split': Value('string'), 'age_years': Value('float64'), 'age_label_type': Value('string'), 'chronological_age': Value('float64'), 'brain_age': Value('float64'), 'sex': Value('string'), 'healthy': Value('bool'), 'modality': Value('string'), 'notes': Value('string'), 'file_path': Value('string'), 'golden_path': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 4 new columns ({'age_at_scan', 'dx_group', 'participant_id', 'site'}) and 12 missing columns ({'chronological_age', 'age_years', 'file_path', 'age_label_type', 'notes', 'modality', 'golden_path', 'brain_age', 'subject_id', 'split', 'healthy', 'dataset'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/bilalahmad176176/BrainAge-Raw-Files/provenance/ABIDEII_combined_phenotypic.csv (at revision de4230a92188b589eaca8c9bb45d0041377317cd), [/tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/manifest.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/manifest.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ABIDEII_combined_phenotypic.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ABIDEII_combined_phenotypic.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ADHD200_combined_phenotypic.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/ADHD200_combined_phenotypic.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-10_ABIDE-I_phenotypic.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-10_ABIDE-I_phenotypic.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-1_BCP_meta.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-1_BCP_meta.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-2_Calgary_manifest.tsv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-2_Calgary_manifest.tsv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-5_PTBP_demographics.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-5_PTBP_demographics.csv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-7_MPI-Leipzig_participants.tsv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-7_MPI-Leipzig_participants.tsv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-8_AOMIC_participants.tsv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/DataSet-8_AOMIC_participants.tsv), /tmp/hf-datasets-cache/medium/datasets/69282519000519-config-parquet-and-info-bilalahmad176176-BrainAge-bc8665f7/hub/datasets--bilalahmad176176--BrainAge-Raw-Files/snapshots/de4230a92188b589eaca8c9bb45d0041377317cd/provenance/MIVAC_participants.csv (origin=hf://datasets/bilalahmad176176/BrainAge-Raw-Files@de4230a92188b589eaca8c9bb45d0041377317cd/provenance/MIVAC_participants.csv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)