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TCGA WSI Pre-extracted Features
This repository contains patch-level histopathology features extracted from TCGA whole-slide images.
Two sets of embeddings are provided for each cancer cohort:
{COHORT}-feats-UNI.zip: Features extracted by the UNI pathology foundation model{COHORT}_Plip.zip: Features extracted by the PLIP pathology vision-language model
Included TCGA cohorts
| Code | Cancer Type |
|---|---|
| CESC | Cervical squamous cell carcinoma and endocervical adenocarcinoma |
| ESCA | Esophageal carcinoma |
| HNSC | Head and neck squamous cell carcinoma |
| KICH | Kidney chromophobe |
| KIRC | Kidney renal clear cell carcinoma |
| KIRP | Kidney renal papillary cell carcinoma |
| PCPG | Pheochromocytoma and paraganglioma |
| PRAD | Prostate adenocarcinoma |
Notes
- These are precomputed patch embeddings, not raw WSIs.
- For research use only, comply with TCGA data policies.
- Match features with clinical data using slide IDs from the TCGA GDC portal.
Citation
- UNI: UNI: A Foundation Model for Pathology
- PLIP: PLIP: Pathology Language and Image Pre-training
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