bostongene/Kassandra-cell-deconvolution
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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'Gene,SRX4456915,SRX4677045,SRX4456900,SRX2271035,SRX2558431,SRX3058207,SRX3184896,SRX6404611,SRX6404709,SRX4664162,SRX3263518,SRX3361952,SRX6457025,SRX5806632,SRX2200841,SRX5019102,SRX828406,SRX2271067,SRX4203033,SRX734216,SRX682474,SRX6404790,SRX2635596,SRX2585452,SRX3184990,SRX2378880,SRX4044531,SRX1921653,SRX5961720,SRX3399221,SRX5162224,SRX3351230,SRX2585451,SRX3862279,SRX1802846,SRX5016472,SRX4620960,SRX4978128,SRX5312175,SRX3185048,SRX5656681,SRX5294227,SRX4161204,SRX2271054,SRX4012362,SRX4374826,SRX1433438,SRX2469650,SRX4281665,SRX2954003,SRX4161201,SRX2563423,SRX5444151,SRX3263481,SRX2140254,SRX1921647,SRX3797668,ERX2283329,SRX4089117,SRX7052823,ERX2237274,SRX5806650,SRX2532718,SRX4277194,SRX3184901,SRX3848495,SRX3263487,SRX6369356,SRX4453801,SRX5294228,SRX3058223,SRX5028404,SRX2875306,SRX4518778,SRX6404725,SRX3399203,SRX6404673,SRX2532713,SRX3630258,SRX4453815,SRX5686059,SRX4978129,SRX865113,SRX3361953,SRX1959645,SRX6404655,SRX2323837,SRX2558452,SRX4456910,SRX2965755,SRX6369373,ERX211582,SRX2614894,SRX5019113,SRX3185035,SRX2532740,SRX6404680,SRX3797637,SRX4603403,SRX6404763,SRX6404657,SRX3184908,SRX4277198,SRX3824909,SRX5358455,SRX828390,SRX4277202,SRX4374821,SRX2200814,SRX5732393,SRX5294204,SRX375689,SRX5624314,SRX4456908,SRX3184983,SRX828405,SRX2875319,SRX2558442,ERX2237273,SRX3263449,SRX6404605,SRX2532745,SRX5282947,SRX1950676,SRX5294178,SRX2954006,SRX5702700,SRX4603407,SRX4599897,SRX7052827,SRX2378927,SRX4277220,SRX4416644,ERX2283316,SRX5162217,SRX1903075,SRX26
...
429192,SRX3340037,SRX1429206,SRX806715,SRX3340020,SRX3340024,SRX3340042,SRX3340035,SRX1429193,SRX3340039,SRX806720,SRX3340041,SRX1429201,SRX1429203,SRX3340022,SRX3340038,SRX1429191,SRX1429190,SRX3340025,SRX3340019,SRX1429194,SRX1429197,SRX3340021,SRX3340036,SRX3340040,SRX3340023,SRX5124479,SRX3862472,SRX761544,SRX5414013,SRX5124516,SRX5413979,SRX761540,SRX1737056,SRX5413990,SRX317737,SRX1737042,SRX3603602,SRX5413996,SRX3603597,SRX3862473,SRX3862467,SRX5414015,SRX5124480,SRX761542,SRX5413981,SRX3862471,SRX5414010,SRX1027573,SRX317729,SRX761555,SRX761541,SRX761556,SRX726605,SRX5413997,SRX1737038,SRX761554,SRX5414005,SRX726604,SRX5414006,SRX3862470,SRX5414004,SRX5414011,SRX5413978,SRX3862474,SRX5413985,SRX5414007,SRX761546,SRX3603596,SRX761538,SRX1737052,SRX5413995,SRX761536,SRX761550,SRX5413993,SRX761553,SRX317746,SRX5124515,SRX761549,SRX761552,SRX857938,SRX5414012,SRX761551,SRX761535,SRX761548,SRX3862463,SRX761545,SRX857937,SRX5413986,SRX726603,SRX317740,SRX3603593,SRX5414008,SRX1737049,SRX1737057,SRX3603598,SRX5413998,SRX317738,SRX3862465,SRX761547,SRX5413991,SRX5414014,SRX1737077,SRX3862468,SRX761534,SRX761537,SRX761539,SRX761543,SRX1737068,SRX5414002,SRX5413976,SRX5414000,SRX317745,SRX857936,SRX3862464,SRX3862469,SRX1737079,SRX3862466,SRX5413982,SRX5413989,SRX5414001,SRX5413994,SRX5413977,SRX5413992,SRX1027578,BGP0000004,BGP0000005,BGP0000006,BGP0000007,BGP0000008,BGP0000009,BGP0000010,BGP0000011,BGP0000012,BGP0000014,BGP0000015,BGP0000016,BGP0000017,BGP0000018,BGP0000019'}) and 1 missing columns ({',Tumor_model_annot,Blood_model_annot,Dataset'}).
This happened while the csv dataset builder was generating data using
zip://all_models_expr.tsv::/tmp/hf-datasets-cache/medium/datasets/55854001113281-config-parquet-and-info-bostongene-Kassandra-data-f9e33f7f/hub/datasets--bostongene--Kassandra-data/snapshots/02c552cbc98eb98d9c420579bdc20254707d856a/train_data/all_models.zip, [/tmp/hf-datasets-cache/medium/datasets/55854001113281-config-parquet-and-info-bostongene-Kassandra-data-f9e33f7f/hub/datasets--bostongene--Kassandra-data/snapshots/02c552cbc98eb98d9c420579bdc20254707d856a/train_data/all_models.zip (origin=hf://datasets/bostongene/Kassandra-data@02c552cbc98eb98d9c420579bdc20254707d856a/train_data/all_models.zip), /tmp/hf-datasets-cache/medium/datasets/55854001113281-config-parquet-and-info-bostongene-Kassandra-data-f9e33f7f/hub/datasets--bostongene--Kassandra-data/snapshots/02c552cbc98eb98d9c420579bdc20254707d856a/train_data/laboratory_data.zip (origin=hf://datasets/bostongene/Kassandra-data@02c552cbc98eb98d9c420579bdc20254707d856a/train_data/laboratory_data.zip)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
Gene,SRX4456915,SRX4677045,SRX4456900,SRX2271035,SRX2558431,SRX3058207,SRX3184896,SRX6404611,SRX6404 (... 100797 chars omitted): string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 202157
to
{',Tumor_model_annot,Blood_model_annot,Dataset': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'Gene,SRX4456915,SRX4677045,SRX4456900,SRX2271035,SRX2558431,SRX3058207,SRX3184896,SRX6404611,SRX6404709,SRX4664162,SRX3263518,SRX3361952,SRX6457025,SRX5806632,SRX2200841,SRX5019102,SRX828406,SRX2271067,SRX4203033,SRX734216,SRX682474,SRX6404790,SRX2635596,SRX2585452,SRX3184990,SRX2378880,SRX4044531,SRX1921653,SRX5961720,SRX3399221,SRX5162224,SRX3351230,SRX2585451,SRX3862279,SRX1802846,SRX5016472,SRX4620960,SRX4978128,SRX5312175,SRX3185048,SRX5656681,SRX5294227,SRX4161204,SRX2271054,SRX4012362,SRX4374826,SRX1433438,SRX2469650,SRX4281665,SRX2954003,SRX4161201,SRX2563423,SRX5444151,SRX3263481,SRX2140254,SRX1921647,SRX3797668,ERX2283329,SRX4089117,SRX7052823,ERX2237274,SRX5806650,SRX2532718,SRX4277194,SRX3184901,SRX3848495,SRX3263487,SRX6369356,SRX4453801,SRX5294228,SRX3058223,SRX5028404,SRX2875306,SRX4518778,SRX6404725,SRX3399203,SRX6404673,SRX2532713,SRX3630258,SRX4453815,SRX5686059,SRX4978129,SRX865113,SRX3361953,SRX1959645,SRX6404655,SRX2323837,SRX2558452,SRX4456910,SRX2965755,SRX6369373,ERX211582,SRX2614894,SRX5019113,SRX3185035,SRX2532740,SRX6404680,SRX3797637,SRX4603403,SRX6404763,SRX6404657,SRX3184908,SRX4277198,SRX3824909,SRX5358455,SRX828390,SRX4277202,SRX4374821,SRX2200814,SRX5732393,SRX5294204,SRX375689,SRX5624314,SRX4456908,SRX3184983,SRX828405,SRX2875319,SRX2558442,ERX2237273,SRX3263449,SRX6404605,SRX2532745,SRX5282947,SRX1950676,SRX5294178,SRX2954006,SRX5702700,SRX4603407,SRX4599897,SRX7052827,SRX2378927,SRX4277220,SRX4416644,ERX2283316,SRX5162217,SRX1903075,SRX26
...
429192,SRX3340037,SRX1429206,SRX806715,SRX3340020,SRX3340024,SRX3340042,SRX3340035,SRX1429193,SRX3340039,SRX806720,SRX3340041,SRX1429201,SRX1429203,SRX3340022,SRX3340038,SRX1429191,SRX1429190,SRX3340025,SRX3340019,SRX1429194,SRX1429197,SRX3340021,SRX3340036,SRX3340040,SRX3340023,SRX5124479,SRX3862472,SRX761544,SRX5414013,SRX5124516,SRX5413979,SRX761540,SRX1737056,SRX5413990,SRX317737,SRX1737042,SRX3603602,SRX5413996,SRX3603597,SRX3862473,SRX3862467,SRX5414015,SRX5124480,SRX761542,SRX5413981,SRX3862471,SRX5414010,SRX1027573,SRX317729,SRX761555,SRX761541,SRX761556,SRX726605,SRX5413997,SRX1737038,SRX761554,SRX5414005,SRX726604,SRX5414006,SRX3862470,SRX5414004,SRX5414011,SRX5413978,SRX3862474,SRX5413985,SRX5414007,SRX761546,SRX3603596,SRX761538,SRX1737052,SRX5413995,SRX761536,SRX761550,SRX5413993,SRX761553,SRX317746,SRX5124515,SRX761549,SRX761552,SRX857938,SRX5414012,SRX761551,SRX761535,SRX761548,SRX3862463,SRX761545,SRX857937,SRX5413986,SRX726603,SRX317740,SRX3603593,SRX5414008,SRX1737049,SRX1737057,SRX3603598,SRX5413998,SRX317738,SRX3862465,SRX761547,SRX5413991,SRX5414014,SRX1737077,SRX3862468,SRX761534,SRX761537,SRX761539,SRX761543,SRX1737068,SRX5414002,SRX5413976,SRX5414000,SRX317745,SRX857936,SRX3862464,SRX3862469,SRX1737079,SRX3862466,SRX5413982,SRX5413989,SRX5414001,SRX5413994,SRX5413977,SRX5413992,SRX1027578,BGP0000004,BGP0000005,BGP0000006,BGP0000007,BGP0000008,BGP0000009,BGP0000010,BGP0000011,BGP0000012,BGP0000014,BGP0000015,BGP0000016,BGP0000017,BGP0000018,BGP0000019'}) and 1 missing columns ({',Tumor_model_annot,Blood_model_annot,Dataset'}).
This happened while the csv dataset builder was generating data using
zip://all_models_expr.tsv::/tmp/hf-datasets-cache/medium/datasets/55854001113281-config-parquet-and-info-bostongene-Kassandra-data-f9e33f7f/hub/datasets--bostongene--Kassandra-data/snapshots/02c552cbc98eb98d9c420579bdc20254707d856a/train_data/all_models.zip, [/tmp/hf-datasets-cache/medium/datasets/55854001113281-config-parquet-and-info-bostongene-Kassandra-data-f9e33f7f/hub/datasets--bostongene--Kassandra-data/snapshots/02c552cbc98eb98d9c420579bdc20254707d856a/train_data/all_models.zip (origin=hf://datasets/bostongene/Kassandra-data@02c552cbc98eb98d9c420579bdc20254707d856a/train_data/all_models.zip), /tmp/hf-datasets-cache/medium/datasets/55854001113281-config-parquet-and-info-bostongene-Kassandra-data-f9e33f7f/hub/datasets--bostongene--Kassandra-data/snapshots/02c552cbc98eb98d9c420579bdc20254707d856a/train_data/laboratory_data.zip (origin=hf://datasets/bostongene/Kassandra-data@02c552cbc98eb98d9c420579bdc20254707d856a/train_data/laboratory_data.zip)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
,Tumor_model_annot,Blood_model_annot,Dataset string |
|---|
SRX4456915,CD4_T_cells,CD4_T_cells,GSE117655 |
SRX4677045,CD8_T_cells,CD8_T_cells,GSE119918 |
SRX4456900,CD4_T_cells,CD4_T_cells,GSE117655 |
SRX2271035,,CD4_T_cells,GSE89225 |
SRX2558431,T_helpers,CD4_T_cells,GSE94859 |
SRX3058207,,Granulocytes,GSE102215 |
SRX3184896,CD4_T_cells,CD4_T_cells,GSE103844 |
SRX6404611,,CD4_T_cells,GSE133822 |
SRX6404709,,CD8_T_cells,GSE133822 |
SRX4664162,NK_cells,NK_cells,GSE119705 |
SRX3263518,Monocytes,Monocytes,GSE104744 |
SRX3361952,Neutrophils,Neutrophils,GSE106520 |
SRX6457025,,CD4_T_cells,GSE134416 |
SRX5806632,,CD4_T_cells,GSE130882 |
SRX2200841,,CD4_T_cells,GSE87505 |
SRX5019102,gd_T_Cells,T_cells,GSE122624 |
SRX828406,Non_plasma_B_cells,Non_plasma_B_cells,GSE64655 |
SRX2271067,,CD4_T_cells,GSE89225 |
SRX4203033,Neutrophils,Neutrophils,GSE115736 |
SRX734216,,Granulocytes,GSE62408 |
SRX682474,CD4_T_cells,CD4_T_cells,GSE60482 |
SRX6404790,,Monocytes,GSE133822 |
SRX2635596,T_helpers,CD4_T_cells,GSE96538 |
SRX2585452,B_cells,B_cells,GSE95282 |
SRX3184990,CD4_T_cells,CD4_T_cells,GSE103844 |
SRX2378880,T_helpers,CD4_T_cells,GSE90569 |
SRX4044531,CD4_T_cells,CD4_T_cells,GSE114065 |
SRX1921653,,PDC,GSE84204 |
SRX5961720,,B_cells,GSE132138 |
SRX3399221,Follicular_T_helper,CD4_T_cells,GSE107011 |
SRX5162224,Monocytes,Monocytes,GSE124073 |
SRX3351230,CD8_T_cells,CD8_T_cells,GSE106420 |
SRX2585451,B_cells,B_cells,GSE95282 |
SRX3862279,NK_cells,NK_cells,GSE112483 |
SRX1802846,gd_T_Cells,T_cells,GSE81975 |
SRX5016472,,CD4_T_cells,GSE122612 |
SRX4620960,Tregs,CD4_T_cells,GSE119191 |
SRX4978128,CD8_T_cells,CD8_T_cells,GSE122149 |
SRX5312175,,NK_cells,GSE125916 |
SRX3185048,CD4_T_cells,CD4_T_cells,GSE103844 |
SRX5656681,CD4_T_cells,CD4_T_cells,GSE129522 |
SRX5294227,NK_cells,NK_cells,GSE125686 |
SRX4161204,CD8_T_cells,CD8_T_cells,GSE115305 |
SRX2271054,,CD4_T_cells,GSE89225 |
SRX4012362,Myeloid_cells,Myeloid_cells,GSE113839 |
SRX4374826,CD8_T_cells,CD8_T_cells,GSE116865 |
SRX1433438,Myeloid_cells,Myeloid_cells,GSE75042 |
SRX2469650,Monocytes,Monocytes,GSE93265 |
SRX4281665,,CD4_T_cells,GSE116139 |
SRX2954003,Non_plasma_B_cells,B_cells,GSE100441 |
SRX4161201,CD8_T_cells,CD8_T_cells,GSE115305 |
SRX2563423,,B_cells,GSE94897 |
SRX5444151,,CD4_T_cells,GSE127457 |
SRX3263481,CD8_T_cells,CD8_T_cells,GSE104744 |
SRX2140254,CD4_T_cells,CD4_T_cells,GSE86452 |
SRX1921647,,PDC,GSE84204 |
SRX3797668,,CD8_T_cells,GSE111892 |
ERX2283329,,CD8_T_cells,E-MTAB-6370 |
SRX4089117,NK_cells,NK_cells,GSE114519 |
SRX7052823,,Neutrophils,GSE139358 |
ERX2237274,Tregs,CD4_T_cells,E-MTAB-6158 |
SRX5806650,,CD4_T_cells,GSE130882 |
SRX2532718,CD4_T_cells,CD4_T_cells,GSE94396 |
SRX4277194,CD4_T_cells,CD4_T_cells,GSE116073 |
SRX3184901,CD4_T_cells,CD4_T_cells,GSE103844 |
SRX3848495,Th1_cells,CD4_T_cells,GSE112341 |
SRX3263487,CD8_T_cells,CD8_T_cells,GSE104744 |
SRX6369356,,NK_cells,GSE133383 |
SRX4453801,NK_cells,NK_cells,GSE117614 |
SRX5294228,NK_cells,NK_cells,GSE125686 |
SRX3058223,,Granulocytes,GSE102215 |
SRX5028404,T_helpers,CD4_T_cells,GSE122735 |
SRX2875306,CD8_T_cells_PD1_low,CD8_T_cells,GSE99531 |
SRX4518778,Non_plasma_B_cells,Non_switched_memory_B_cells,GSE118254 |
SRX6404725,,CD4_T_cells,GSE133822 |
SRX3399203,B_cells,Non_switched_memory_B_cells,GSE107011 |
SRX6404673,,CD4_T_cells,GSE133822 |
SRX2532713,CD4_T_cells,CD4_T_cells,GSE94396 |
SRX3630258,T_helpers,CD4_T_cells,GSE109843 |
SRX4453815,CD8_T_cells,CD8_T_cells,GSE117614 |
SRX5686059,CD4_T_cells,CD4_T_cells,GSE129829 |
SRX4978129,CD8_T_cells,CD8_T_cells,GSE122149 |
SRX865113,CD4_T_cells,CD4_T_cells,GSE65621 |
SRX3361953,Neutrophils,Neutrophils,GSE106520 |
SRX1959645,Monocytes,Monocytes,GSE84531 |
SRX6404655,,CD4_T_cells,GSE133822 |
SRX2323837,NK_cells,NK_cells,GSE89484 |
SRX2558452,T_helpers,CD4_T_cells,GSE94859 |
SRX4456910,CD4_T_cells,CD4_T_cells,GSE117655 |
SRX2965755,CD8_T_cells,CD8_T_cells,GSE100624 |
SRX6369373,,NK_cells,GSE133383 |
ERX211582,Myeloid_cells,Myeloid_cells,E-SYBR-3 |
SRX2614894,T_helpers,CD4_T_cells,GSE95754 |
SRX5019113,T_cells,T_cells,GSE122624 |
SRX3185035,CD4_T_cells,CD4_T_cells,GSE103844 |
SRX2532740,CD4_T_cells,CD4_T_cells,GSE94396 |
SRX6404680,,CD8_T_cells,GSE133822 |
SRX3797637,,CD8_T_cells,GSE111892 |
SRX4603403,T_helpers,CD4_T_cells,GSE118974 |
SRX6404763,,Monocytes,GSE133822 |
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