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| "n_defense_subtypes": 236, |
| "n_lineage_clusters": 344, |
| "median_cluster_size": 2.0, |
| "mean_chromosomal_systems": 12.339166666666667, |
| "sd_chromosomal_systems": 4.997579344598298, |
| "crispr_columns_found": [ |
| "CAS_Class1-Subtype-I-C", |
| "CAS_Class1-Subtype-I-E", |
| "CAS_Class1-Subtype-I-F", |
| "CAS_Class1-Type-I", |
| "Rst_HelicaseDUF2290" |
| ], |
| "frac_genomes_with_crispr": 0.5358333333333334, |
| "n_exposure_covariates": 21 |
| }, |
| "testA_all_defense_load": { |
| "partial_r2": 0.06095426500549417, |
| "null_mean_r2": 0.02996459056108824, |
| "partial_r2_excess": 0.030989674444405927, |
| "pvalue": 0.005497251374312844, |
| "n": 1200, |
| "n_covariates_used": 21 |
| }, |
| "testA_crispr_only": { |
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| "null_mean_r2": 0.02912872300410121, |
| "partial_r2_excess": 0.004815875912153909, |
| "pvalue": 0.2933533233383308, |
| "n": 1200, |
| "n_covariates_used": 21 |
| }, |
| "testB_load_vs_extrachrom_len": { |
| "spearman": 0.08194888875640106, |
| "pvalue": 0.004502690163575952, |
| "n": 1200 |
| }, |
| "testB_load_vs_extrachrom_systems": { |
| "spearman": 0.0799184824601281, |
| "pvalue": 0.0056055638081669076, |
| "n": 1200 |
| }, |
| "testB_crispr_vs_extrachrom_len": { |
| "spearman": 0.022771070421412815, |
| "pvalue": 0.43064223490652587, |
| "n": 1200 |
| }, |
| "per_system": { |
| "n_tested": 116, |
| "n_significant_p05_uncorrected": 65, |
| "n_expected_by_chance_p05": 5.800000000000001, |
| "n_significant_BH_q10": 70, |
| "frac_significant_BH_q10": 0.603448275862069, |
| "median_partial_r2": 0.057970795306195144, |
| "max_partial_r2": 0.32909252763754515, |
| "worst_systems": [ |
| { |
| "system": "Rst_3HP", |
| "partial_r2": 0.32909252763754515, |
| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.00997506234413965 |
| }, |
| { |
| "system": "BREX_II", |
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| "pvalue_bh": 0.00997506234413965 |
| }, |
| { |
| "system": "DS-38", |
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| "pvalue": 0.004987531172069825, |
| "pvalue_bh": 0.016530103313145705 |
| }, |
| { |
| "system": "BstA", |
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| "pvalue_bh": 0.00997506234413965 |
| }, |
| { |
| "system": "CBASS_II_HNH", |
| "partial_r2": 0.19268407371357144, |
| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.00997506234413965 |
| }, |
| { |
| "system": "Lamassu_HNH", |
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| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.00997506234413965 |
| } |
| ] |
| } |
| } |
