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<reponame>smehdia/NTIRE2021-IQA-MACS<filename>model_attention.py
import tensorflow as tf
from tensorflow.keras.layers import *
from tensorflow.keras.models import Model
'''
model architecture with Batch Normalization, Attention and Residual Blocks
'''
def normalize_tensor_image(inp):
out = tf.convert_to_tensor(i... |
<filename>nucleotides/filesystem.py
"""\
Module for interacting with the filesystem relative to the current nucleotides task
directory. Each nucleotides benchmarking task takes place in a directory named for
the nucleotides task ID. This module functions to simplify getting the location of
where input files can be foun... |
<reponame>susuhahnml/xls2asp
#!/usr/bin/env python3
"""
Converts an instance given as a set of excel tables
into a set of asp facts.
Input: Excel xlsx file
Output: Logic program instance file
"""
import warnings
import csv
import argparse
import sys
import traceback
import openpyxl as xls
import math
import warnings... |
<filename>cdbfunctions.py
"""cdbfunctions.py
Developer: <NAME>
Last Updated: September 12, 2014
This module consists of all functions that interact directly with the
cdbtabledef.py module. Functions include inserting, deleting, and
updating records in the database. There are also several class definitions
which are... |
"""Native adapter for serving CherryPy via its builtin server."""
import logging
import sys
import io
import cheroot.server
import cherrypy
from cherrypy._cperror import format_exc, bare_error
from cherrypy.lib import httputil
class NativeGateway(cheroot.server.Gateway):
recursive = False
def respond(sel... |
import json
import logging
from api.api_samples.python_client.api_client import CloudBoltAPIClient
from api.api_samples.python_client.samples.api_helpers import wait_for_order_completion, wait_for_job_completion
from common.methods import set_progress
from servicecatalog.models import ServiceBlueprint
from utilities.e... |
<filename>import_scripts/methylation.py
###ExonArray
#Copyright 2005-2008 <NAME> Institutes, San Francisco California
#Author <NAME> - <EMAIL>
#Permission is hereby granted, free of charge, to any person obtaining a copy
#of this software and associated documentation files (the "Software"), to deal
#in the Sof... |
'''blox/compile.py
Creates an optimized programattically generated template from an html file
Copyright (C) 2015 <NAME>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated
documentation files (the "Software"), to deal in the Software without restriction, incl... |
<gh_stars>0
#CREATING NEW CSV FILE TAKING AVERAGE FOR VARIOUS PARAMETERS FOR A SINGLE TIME PERIO
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
import os
def dataExtraction(path):
obd = pd.read_csv(path,index_col=False)
#print(obd.columns)
'''
obd.columns = ['ENGINE_RUN_TINE', 'ENGINE_R... |
#!/usr/bin/env python
import matplotlib.pyplot as plt
import numpy as np
import sys,os
import string
import math
import argparse
def read_plugmap(filename):
debug=False
file=open(filename,"r")
doc={}
intypedef=False
indices={}
indices["HOLETYPE"]=8
indices["OBJECT"]=21
indices["ra"]=9... |
import time
import math
import os
import re
import string
from html import escape
import IPython
from IPython.core.magic import Magics, magics_class
from jinja2 import Template, StrictUndefined
from traitlets import Int, Unicode, Bool
DEFAULT_SCHEMA_TTL = -1
DEFAULT_CATALOGS = ''
VARIABLE_NOT_FOUND_MSG = '''
A Jinj... |
<filename>pythonscripts/comix.py
'''
This iteration of comix stripper uses the retrieve module which tends to crash
a lot less than urllib when grabbing jpeg images or just large files in
general. I started writing doc strings but haven't finished. Currently the
program has to create a directory called Comix in your h... |
<reponame>Znerual/FastLogin
import logging
import urllib.request
import urllib.parse
import http.cookiejar
import json
from requests import requests
from configuration import Configuration
def logIn():
# ---! Data !---
logging.basicConfig(filename='log',level=logging.DEBUG)
logging.debug("Assembling the data")... |
from orchestra.models import Iteration
from orchestra.models import Task
from orchestra.models import TaskAssignment
from orchestra.utils.task_properties import current_assignment
from orchestra.utils.task_properties import get_iteration_history
def verify_iterations(task_id):
task = Task.objects.get(id=task_id)
... |
#!/usr/bin/env python
from optparse import OptionParser
import os
import re
import sys
import logging
LOGGER = logging.getLogger(__name__)
def main(cmdline=None):
parser = make_parser()
opts, args = parser.parse_args(cmdline)
error_happened = False
for filename in args[1:]:
stream = open(file... |
from maestro.core.metadata import VectorClock
from maestro.core.utils import make_hashable
from enum import Enum
from typing import List, Any, Union, Optional
import copy
class Comparator(Enum):
"""Represents a comparison operation that can be performed in a field."""
EQUALS = "=="
NOT_EQUALS = "!="
L... |
<gh_stars>0
import os
import numpy as np
import torch as t
from jukebox.hparams import Hyperparams
from jukebox.utils.torch_utils import empty_cache
from jukebox.utils.audio_utils import save_wav, load_audio
from jukebox.make_models import make_model
from jukebox.align import get_alignment
from jukebox.save_html impor... |
#!/usr/bin/python
"""
Learning tool.
=======
License
=======
Copyright (c) 2015 <NAME>
Permission is hereby granted, free of charge, to any person obtaining a copy of this
software and associated documentation files (the "Software"), to deal in the Software
without restriction, including without limitation the rights... |
import numpy as np
from math import pi
import matplotlib.pyplot as plt
sqrt_pi = (2 * pi) ** 0.5
class NBFunctions:
@staticmethod
def gaussian(x, mu, sigma):
return np.exp(-(x - mu) ** 2 / (2 * sigma ** 2)) / (sqrt_pi * sigma)
@staticmethod
def gaussian_maximum_likelihood(labelled_x, n_catego... |
<gh_stars>0
import logging
from sqlalchemy import create_engine
import pandas as pd
LOG = logging.getLogger(__name__)
class SeqlDB(object):
def __init__(self, conString, dbVendor = 'SqlServer'):
self.dbVendor = dbVendor
self.conString = conString
self.seqlEngine = self.creat... |
<reponame>cherepaha/PyDDM
import unittest
from unittest import TestCase, main
from string import ascii_letters
import numpy as np
from itertools import groupby
from math import fsum
import pandas
import copy
import scipy.stats
from numpy import asarray as aa
import ddm
def fails(f, exception=BaseException):
fail... |
from __future__ import with_statement
__version__ = '0.31'
__license__ = 'MIT'
import re
import os
import sys
import finalseg
import time
import tempfile
import marshal
from math import log
import random
import threading
from functools import wraps
import logging
DICTIONARY = "dict.txt"
DICT_LOCK = threading.RLock()
... |
#!/usr/bin/env python
# thermald reports on cpu temp, cou usage, memory usage
# zmq message used = thermal
# it also:
# controls the fan of the EON
# turns charging on and off
# checks if we still have a good location
# checks if the selfdrive can be started based on :
# a health message is available (ge... |
import math
import numpy as np
import logging
import cv2
import os
import shutil
import torch
import torch.nn as nn
import torch.nn.functional as F
class Logger(object):
def __init__(self, log_file_name, logger_name, log_level=logging.DEBUG):
### create a logger
self.__logger = logging.getLogger(... |
from __future__ import print_function, absolute_import
import numpy as np
from six import iterkeys
from h5Nastran.defaults import Defaults
from h5Nastran.h5nastrannode import H5NastranNode
from .input_table import InputTable, TableDef
class Property(H5NastranNode):
def __init__(self, h5n, input):
self._... |
<filename>IoT/MHEALTH/models/CNN_shiftadd_se.py
from adder import adder
import torch
import torch.nn as nn
import torch.nn.functional as F
from se_shift import SEConv2d, SELinear
__all__ = ['CNN_shiftadd_se']
def conv_add(in_planes, out_planes, threshold, sign_threshold, distribution, kernel_size=(3, 3), stride=1, pa... |
""" Unit tests for each geometry mesh transformation component."""
from __future__ import print_function, division
import numpy as np
import unittest
from openmdao.api import Problem, Group
from openmdao.utils.assert_utils import assert_rel_error, assert_check_partials
from openaerostruct.geometry.geometry_mesh_tran... |
import sys
sys.path.append(".")
import py
#from sympy import *
from sympy.numerics import *
from sympy.numerics.functions import *
import math
import cmath
from sympy.utilities.pytest import XFAIL
def test_sqrt():
for i in range(1000):
assert sqrt(Float(i**2)) == i
# These should round ide... |
<reponame>jmcb/jquizzyva
#!/usr/bin/env python
import functools
import re
SET_FINDER = re.compile("\[(\^?:?[A-Z]+)\]")
MAX_WORD_LENGTH = 16
try:
from util._pattern import try_word, CAnagramPattern
except ImportError:
try_word = None
CAnagramPattern = None
class AnagramPattern (object):
"""
A pa... |
from django.urls import path, include
from django.urls.conf import re_path
from .views import *
from rest_framework.routers import DefaultRouter
#router = DefaultRouter()
#router.register('ejes', EjeViewSet, basename='ejes')
#router.register('instituciones', InstitucionViewSet, basename='instituciones')
#router.regis... |
"""Selecting simulations from a scan based on parameters.
"""
import os
import pickle
from copy import deepcopy
from pathlib import Path
from typing import Any, Callable, Dict, Iterable, List, Optional, Set, Tuple, Union
import numpy
from tqdm import tqdm
from mlxtk.cwd import WorkingDir
from mlxtk.log import get_log... |
<filename>page_rep.py<gh_stars>0
import tkinter as tk
import numpy as np
def main():
mainwindow = tk.Tk()
mainwindow.title("OS Simulator")
mainwindow.minsize(400, 300)
matdisplay_btn = tk.Button(master=mainwindow, text="Page Replacement Algorithm", command=getinputPagerep,background="cyan")
matdisp... |
'''
Created on Mar 29, 2017
@author: gcampagn
'''
import os
import sys
import numpy as np
import tensorflow as tf
import matplotlib
matplotlib.use('GTK3Cairo')
import matplotlib.pyplot as plt
from util.seq2seq import Seq2SeqEvaluator
from util.loader import unknown_tokens, load_data
from util.general_utils import g... |
<reponame>ywen666/code-transformer<filename>scripts/deduplicate-java-pretrain.py
"""
To generate the huge java-pretrain dataset, we first manually merge java-small, java-medium and java-large into the
same folder. It can then happen that in the new larger training set there are Java methods from the same projects or
ev... |
import os
import sys
import random
from psychopy import clock, core, event, logging, visual
from datetime import datetime
script_dir = os.path.dirname(os.path.abspath(__file__))
class Hampton2006(object):
'''
>>> env = Hampton2006(deterministic_reward=True, deterministic_reversal=True)
>>> env.reset()
... |
#LCD Configuration
import Adafruit_CharLCD as LCD
lcd_rs = 27
lcd_en = 22
lcd_d4 = 25
lcd_d5 = 24
lcd_d6 = 23
lcd_d7 = 18
lcd_backlight = 4
lcd_columns = 16
lcd_rows = 2
lcd = LCD.Adafruit_CharLCD(lcd_rs, lcd_en, lcd_d4, lcd_d5, lcd_d6, lcd_d7, lcd_columns, lcd_rows, lcd_backli... |
import itertools
import gflags
import logging
import os
from ct.client import log_client
from ct.client import state
from ct.client import temp_db
from ct.crypto import error
from ct.crypto import merkle
from ct.proto import client_pb2
FLAGS = gflags.FLAGS
gflags.DEFINE_integer("entry_write_batch_size", 1000, "Maxim... |
<reponame>J-Owens/soccerdata<gh_stars>0
"""Scraper for api.clubelo.com."""
import re
from datetime import datetime, timedelta
from pathlib import Path
from typing import Optional, Union
import pandas as pd
from unidecode import unidecode
from ._common import BaseReader, standardize_colnames
from ._config import DATA_... |
import numpy as np
import tensorflow as tf
import tensorflow.keras.backend as K
from tensorflow.keras.preprocessing import image
def cod(y_true, y_pred):
SSR=K.sum(K.square(y_true-y_pred))
SST=K.sum(K.square(y_true-K.mean(y_true)))
RS=SSR/SST
return RS
def pred4_newloss(y_true, y_pred):
re... |
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.
from typing import List, Dict, Callable
import re
from datetime import datetime
from recognizers_text.utilities import RegExpUtility
from ..utilities import DateUtils
from ..base_holiday import BaseHolidayParserConfigurati... |
<gh_stars>0
"""
This module provides a ASE calculator class [#ase1]_ for SchNetPack models, as
well as a general Interface to all ASE calculation methods, such as geometry
optimisation, normal mode computation and molecular dynamics simulations.
References
----------
.. [#ase1] Larsen, Mortensen, Blomqvist, Castelli, ... |
import struct
import time
from enum import Enum
from app.connector import BasicConnector
from app.exceptions import InvalidCommandError, InvalidChecksumError, DeviceAuthError, InvalidResponseError, \
ReadFailedError, AdbCommandFailureException, InterleavedDataError
# Maximum amount of data in an ADB packet.
MAX_A... |
<reponame>theshaodi/algorithm004-05
#@author:leacoder
#@des: 递归 电话号码的字母组合
"""
递归处理digits字符串中的每个字符
digits的每个字符又有多种情况（多个字母需要处理）
递归终止条件就是 digits字符串中的每个字符 已处理结束
"""
class Solution:
phone = {'2': ['a', 'b', 'c'],
'3': ['d', 'e', 'f'],
'4': ['g', 'h', 'i'],
'5': ['j'... |
"""Steganography, by <NAME>
2020-10-07 v1.0
"""
import collections, logging, math
from random import randint
from PIL import Image # pip install Pillow
def bits2bytes(bits):
while True:
byte = 0
for _ in range(8):
try:
byte = (byte << 1) | next(bits)
... |
import logging
import pytest
from requests import Request
from starlette.applications import Starlette
from starlette.endpoints import HTTPEndpoint
from starlette.middleware import Middleware
from starlette.responses import PlainTextResponse
from starlette.testclient import TestClient
import layab.starlette
@pytest... |
#!/usr/bin/env python
"""Writes records to a configurable number of WARC files."""
import os
import re
import uuid
import Queue
import shutil
import socket
import logging
from datetime import datetime
from hanzo.warctools import WarcRecord
LOGGING_FORMAT="[%(asctime)s] %(levelname)s: %(message)s"
logging.basicConfig(... |
<gh_stars>0
import re
class Token:
def __init__(self, type, match):
global code
global col
if isinstance(match, str):
end_pos = len(match)
else:
end_pos = match.span()[1]
self.raw_data = code[:end_pos]
if self.raw_data in keywords:
... |
<gh_stars>0
# coding: utf-8
"""
:mod:`boardgamegeek.guild` - Guild information
==============================================
.. module:: boardgamegeek.guild
:platform: Unix, Windows
:synopsis: classes for storing guild information
.. moduleauthor:: <NAME> <<EMAIL>>
"""
from copy import copy
from .things impo... |
<reponame>vhn0912/python-snippets
import util_make_files
util_make_files.pathlib_basic()
import pathlib
p_file = pathlib.Path('temp/file.txt')
print(p_file)
# temp/file.txt
print(type(p_file))
# <class 'pathlib.PosixPath'>
print(str(p_file))
# temp/file.txt
print(type(str(p_file)))
# <class 'str'>
print(p_file.... |
""" Lexemes base definitions for the lexemes module. """
from enum import Enum
# Definitions
# ============================================================================
# Characters
# ----------------------------------------------------------------------------
def char_range(first, last):
""" Set of charact... |
# Copyright 2015 Google Inc. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... |
# dalla mail di Michele:
# POST https://climbdev.smartcommunitylab.it/v2/api/event/TEST/adca3db3-68d1-4197-b834-a45d61cf1c21/vlab
# Header: "Authorization","Bearer 831a2cc0-48bd-46ab-ace1-c24f767af8af"
# Body:
# [
# {
# "wsnNodeId" : "<id>",
# "eventType" : 901,
# "timestamp" : <timestamp>,
# "payload" ... |
"""VTA related intrinsics"""
from __future__ import absolute_import as _abs
import tvm
def gemm(env, mock=False):
"""Matrix-matrix multiply intrinsic
Parameters
----------
env : Environment
The Environment
mock : bool
Whether create a mock version.
"""
wgt_lanes = env.WGT... |
# Importing all modules
import shutil
from PIL import Image , ImageQt
from GalleryMan.themes.filters import Filters
from GalleryMan.assets.QtHelpers import PopUpMessage
from PyQt5.QtCore import QPropertyAnimation, Qt
from PyQt5.QtGui import QCursor, QImage, QPixmap
from PyQt5.QtWidgets import QDialog, QDialogButtonBox,... |
import codecs, json
import csv, io
import string, random, secrets
from django.http import JsonResponse,HttpResponse
from django.core.validators import URLValidator
from django.core.exceptions import ValidationError
from django.views.decorators.http import require_POST, require_http_methods
from django.core.exceptions ... |
<filename>examples/QKD/e91.py<gh_stars>10-100
from qunetsim.backends import EQSNBackend
from qunetsim.components import Host
from qunetsim.components import Network
from qunetsim.objects import Logger
from qunetsim.objects import Qubit
import random
import numpy as np
Logger.DISABLED = True
def expected_value(result... |
<filename>conanfile.py
from conans import ConanFile, CMake, tools
from conans.tools import download, unzip
import os
class RttrConan(ConanFile):
name = "rttr"
version = "0.9.6"
description = "Conan package for rttr."
url = "https://gi... |
<reponame>ddomhoff/tmtoolkit
# -*- coding: utf-8 -*-
"""
requires "europarl_raw" corpus to be downloaded via `nltk.download()`
"""
import os
import time
import logging
from random import sample
import nltk
import lda
from tmtoolkit.corpus import Corpus
from tmtoolkit.preprocess import TMPreproc
from tmtoolkit.dtm im... |
# (C) Copyright IBM Corp. 2016
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writin... |
<reponame>Acidburn0zzz/luci
# Copyright 2019 The LUCI Authors. All rights reserved.
# Use of this source code is governed under the Apache License, Version 2.0
# that can be found in the LICENSE file.
"""API for interacting with the ResultDB service.
Requires `rdb` command in `$PATH`:
https://godoc.org/go.chromium.or... |
##
# <NAME>
# SoundBoard runs on an OSX machine and plays sounds from the command line
# when told to by HTTP requests. Multiple clients can control it and
# play sound effects through the included HTML interface.
# V 2.0
##
import web
import os
import sys
if sys.version_info < (2,6):
import simplejson as j... |
<gh_stars>0
from django.db import models
from dictionary.views import get_def_for_tooltip
import json
from search.models import TableNames
from tools.app_utils import parse_form_type
import settings
import opus_support
class ParamInfo(models.Model):
"""
This model describes every searchable param in the da... |
# Copyright 2014 OpenCore LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,... |
<filename>well_plate_project/data_etl/_3f_cluster_hough.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Mon Nov 2 12:52:01 2020
@author: modal
"""
import cv2
import matplotlib.pyplot as plt
def cluster_hough(warped):
import numpy as np
#%% CIRCLE RECOGNITION
test = warped.copy();
... |
import sys, math, logging
__all__ = 'defaults,byteorder,partial'.split(',')
# Setup some version-agnostic types that we can perform checks with
integer_types = (int, long) if sys.version_info.major < 3 else (int,)
string_types = (str, unicode) if sys.version_info.major < 3 else (str,)
class field:
class descript... |
<gh_stars>1-10
# -*- coding: utf-8 -*-
__author__ = 'isparks'
from datetime import datetime
from random import choice
from string import ascii_letters
from rwslib import RWSConnection
from rwslib.builders import *
from rwslib.rws_requests import PostDataRequest
class Folder(object):
def __init__(self, oid, rep... |
# project_server.py
from flask import Flask, request, jsonify
from datetime import datetime
from pymodm import connect, MongoModel, fields
import PIL
connect("mongodb+srv://brad_howard:<EMAIL>"
"/final_database?retryWrites=true&w=majority")
app = Flask(__name__)
class Patient(MongoModel):
mr_number = ... |
from collections import defaultdict
from abc import ABC, abstractmethod
import matplotlib.pylab as plot
import numpy as np
github_normal_header = 'https://github.com/'
github_raw_content_header = 'https://raw.githubusercontent.com/'
class ReportGen(ABC):
def __init__(self, max_number_of_classes, repo_locatio... |
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'Learning.ui'
#
# Created by: PyQt5 UI code generator 5.7
#
# WARNING! All changes made in this file will be lost!
from PyQt5 import QtCore, QtGui, QtWidgets
class Ui_Dialog(object):
def setupUi(self, Dialog):
Dialog... |
<reponame>skkapoor/MiningSubjectiveSubgraphPatterns<filename>src/BackgroundDistributions/MaxEntMulti2.py
###################################################################################################################################################################
###################################################... |
from django.contrib.auth.hashers import make_password
from django.db import IntegrityError
from django.shortcuts import get_object_or_404
from django.contrib.auth import login, logout
from django_filters.rest_framework import DjangoFilterBackend
from rest_framework.views import APIView
from rest_framework.viewsets imp... |
class WTAN(Bayes_net_PU):
name = "WTAN"
def __init__(self,alpha = 1,starting_node = 0):
self.alpha = alpha
self.starting_node = starting_node
def Findparent(self, M):
M = M.copy() # to avoid change global M
np.fill_diagonal(M,0)
p = int(M.shape[0])
V = range(p) # set of all nod... |
#
#----------------------------------------------------------------------
# Copyright 2007-2011 Mentor Graphics Corporation
# Copyright 2007-2010 Cadence Design Systems, Inc.
# Copyright 2010-2013 Synopsys, Inc.
# Copyright 2013 NVIDIA Corporation
# Copyright 2013 Cisco Systems, Inc.
# Copyright 2... |
from numba import njit
import numpy as np
from stingray.pulse.pulsar import _load_and_prepare_TOAs, get_model
from scipy.interpolate import interp1d
from astropy.table import Table
ONE_SIXTH = 1 / 6
@njit(nogil=True, parallel=False)
def _hist1d_numba_seq(H, tracks, bins, ranges):
delta = 1 / ((ranges[1] - ranges... |
import bpy
from mathutils import Matrix, Vector, Quaternion
import numpy as np
import math
# Try to make faster the retargeting.
# The algorithm is based in 2 parts.
# 1. From unkonwn armature transfer bone rotations to a known armature. Since sometimes this rotation transfer
# has rotations that mess with the associa... |
from hermes.engines.databases import *
from datetime import datetime, date
import time
import simplejson
from pprint import pprint
import urllib
from sqlobject.sqlbuilder import *
from operator import itemgetter
import logging
import hermes.lib.util as Util
import sys
import re
def sortMultipleKeys(items, columns) :
... |
<reponame>tony/libvcs<filename>libvcs/cmd/git.py
import pathlib
import shlex
from typing import Any, Literal, Optional, Sequence, Union
from libvcs._internal.run import run
from libvcs._internal.types import StrOrBytesPath, StrPath
_CMD = Union[StrOrBytesPath, Sequence[StrOrBytesPath]]
class Git:
def __init__(s... |
from CAMOnion.database.tables import *
from CAMOnion.core.math_tools import rotate_point
from CAMOnion.engine import face, slot, drill
import os
code_engines = {
'face_rough': face.face_rough,
'face_finish': face.face_finish,
'slot_rough': slot.slot_rough,
'slot_finish': slot.slot_finish,
'drill': ... |
<reponame>pranshu30/Azure-DevOps<filename>code/training/train.py
"""
Copyright (C) Microsoft Corporation. All rights reserved.
Microsoft Corporation (“Microsoft”) grants you a nonexclusive, perpetual,
royalty-free right to use, copy, and modify the software code provided by us
("Software Code"). You may not sublice... |
<filename>edl/taxon.py
import re
import logging
import numpy as np
logger = logging.getLogger(__name__)
##############
# Classes #
##############
class Taxonomy:
"""
A container for taxonomy data: contains two maps: id to Node and name
to Node
"""
def __init__(self, idMap, nameMap, realNameM... |
# Copyright (c) 2015-2018 The Botogram Authors (see AUTHORS)
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, mod... |
<gh_stars>0
import os
import sys
import unittest
import numpy
from os.path import join as pjn
import QENSmodels
# resolve path to reference_data
this_module_path = sys.modules[__name__].__file__
data_dir = pjn(os.path.dirname(this_module_path), 'reference_data')
class TestJumpTranslationalDiffusion(unittest.TestCas... |
from django.db import models
from django.conf import settings
from easy_thumbnails.fields import ThumbnailerImageField
from easy_thumbnails.files import get_thumbnailer
BASE_TEMPLATE_PART = [
('HEAD', 'Head'),
('BODY', 'Body'),
('NAVBAR', 'Navbar'),
('IO_PREVIEW', 'Image objects preview'),
('IO_VI... |
# #####################################################################################################################
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved. #
# ... |
#!/usr/bin/python3
__author__ = 'ziyan.yin'
import asyncio
import logging
from typing import List
from nado_utils import cryptutils
import os
import pickle
from ._publisher import Publisher
BUF_SIZE = 1024
MAX_SIZE = 2**20 * 5
HOST = ''
PORT = 11210
data_format = {
'success': True,
'data': '',
'message'... |
# MIT License
#
# Copyright (c) 2020 <NAME> <tony[dot]wu(at)nyu[dot]edu>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to us... |
from candidate import Candidate
from sqlalchemy import ForeignKey, Column, Integer, String
from sqlalchemy.orm import relationship, backref
from sqlalchemy.dialects import mysql
from sqlalchemy.schema import FetchedValue
from base import Base
import json
import datetime
from datetime import timedelta
import calendar
c... |
<gh_stars>1-10
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#########################################################################
# Copyright/License Notice (Modified BSD License) #
#########################################################################
####################################... |
import numpy as np
from collections import deque
import matplotlib.pyplot as plt
import matplotlib.lines as mlines
import gym
# #############################################################################
# PARAMETERS
# #############################################################################
tensorboard_log_pat... |
<gh_stars>0
# Copyright (c) 2021, NVIDIA CORPORATION. All rights reserved.
# Copyright 2015 and onwards Google, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache... |
'Volume generation and augmentation'
# Authors: <NAME> <<EMAIL>>
# <NAME> <<EMAIL>>
# MIT License
import keras
import os.path
import numpy as np
from tqdm import tqdm
from sklearn.neighbors import KDTree
from sklearn.decomposition import PCA
from enzynet.PDB import PDB_backbone
current_directory = os.p... |
import audio
import graphic
import os
import output
import scipy.io.wavfile as wav
from util import *
def read_wav_dirty(f):
samplerate, signal = wav.read(f)
f = filename.truncate_extension(f)
return (f, signal, samplerate)
def read_wav(f):
samplerate, signal = wav.read(f)
#if len(signal.shape) > 1:
# si... |
import os
import shutil
import zipfile
import pathlib
import gitlab
import click
from atacac._utils import log, tower_send
@click.command()
@click.option('--gitlab-url', envvar='GITLAB_URL')
@click.option('--gitlab-token', envvar='GITLAB_TOKEN')
@click.option('--gitlab-project', envvar='GITLAB_PROJECT')
@click.opti... |
# -*- coding: utf-8 -*-
"""Pathway analysis methods."""
import logging
from collections import Counter, defaultdict
from typing import Dict, Iterable, List, Mapping
import numpy as np
import pandas as pd
from networkx import DiGraph
from scipy.stats import fisher_exact
from statsmodels.stats.multitest import multipl... |
#!/usr/bin/env python3
#<NAME> (<EMAIL>)
from Bio.SeqIO.FastaIO import SimpleFastaParser
from Bio.Seq import reverse_complement
from Bio.SeqUtils import GC
import os,sys,argparse,regex
from xopen import xopen
from tqdm import tqdm
parser = argparse.ArgumentParser()
parser.add_argument('-i', '--in_fasta', action = 'st... |
<filename>ansible_bender/api.py
import logging
import os
import datetime
import sys
from ansible_bender.builder import get_builder
from ansible_bender.builders.base import BuildState
from ansible_bender.constants import OUT_LOGGER, OUT_LOGGER_FORMAT
from ansible_bender.core import AnsibleRunner
from ansible_bender.db... |
<reponame>internetarchive/pdf_trio
import os
import json
import pytest
import responses
import pdf_trio
from fixtures import flask_client
def test_api_misc_routes(flask_client):
misc_routes = [
"/",
"/api/list",
]
for r in misc_routes:
resp = flask_client.get(r)
assert re... |
<filename>xgboost_ray/util.py
from typing import Dict, Optional, List
import asyncio
import ray
from ray.util.annotations import DeveloperAPI
from ray.util.queue import Queue as RayQueue, Empty, Full
@DeveloperAPI
class Unavailable:
"""No object should be instance of this class"""
def __init__(self):
... |
import numpy as np
from tqdm import tqdm
import matplotlib.pyplot as plt
import pandas as pd
from ..common.toolbox import embedding,correlation,decide_dim
from ..common.surrogate import twin_surrogate
from ..common.distance import calic_dist_l2
import tensorflow as tf
CCM_PARAM = {
"save_path": "./",
"emb_dim"... |
<filename>rabbitmq_asynqp/rabbitmq_consumer.py<gh_stars>0
import asyncio
import asynqp
class EventConsumer:
def __init__(self, callback_fn, queue):
self.callback_fn = callback_fn
self.queue = queue
def __call__(self, msg):
"""
Whenever call is called same message content is p... |
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