code stringlengths 3 6.57k |
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MS_components.precursor_formula.like(precursor_formula_I) |
MS_components.product_formula.like(product_formula_I) |
MS_components.ms_methodtype.like(ms_methodtype_I) |
all() |
print('bad query for row in ms_components: ') |
print('met_id: ' + met_id_I + ', precursor_formula_I: ' + precursor_formula_I + ', product_formula_I: ' + product_formula_I + ', ms_methodtype_I: ' + ms_methodtype_I) |
exit(-1) |
mscomponents_O.append(mscomponents_1) |
print(e) |
get_nMaxBioReps_sampleDescription(self,experiment_id_I) |
self.session.query(sample_description.sample_replicate) |
experiment.id.like(experiment_id_I) |
experiment.sample_name.like(sample.sample_name) |
sample.sample_id.like(sample_description.sample_id) |
sample_description.sample_replicate.desc() |
all() |
max(bioReps[0]) |
print('no biological replicates found for experiment ' + experiment_id_I) |
exit(-1) |
print(e) |
get_batchFileInfo_experimentID(self,experiment_id_I,sample_type_I) |
experiment.id.like(experiment_id_I) |
experiment.sample_name.like(sample.sample_name) |
sample.sample_type.like(sample_type_I) |
sample.sample_id.like(sample_description.sample_id) |
experiment.id.asc() |
sample.sample_dilution.desc() |
sample_description.sample_name_abbreviation.asc() |
sample.sample_name.asc() |
sample_description.sample_replicate.asc() |
sample_description.sample_desc.desc() |
all() |
experiment.id.asc() |
sample.sample_dilution.desc() |
sample_description.sample_replicate.asc() |
sample_description.sample_desc.desc() |
sample.sample_name.asc() |
all() |
data_O.append(data_tmp) |
print('no data found for experiment ' + experiment_id_I + ' and sample_type' + sample_type_I) |
print(e) |
get_batchFileInfo_experimentIDAndExpType(self,experiment_id_I,sample_type_I,exp_type_I) |
experiment.id.like(experiment_id_I) |
experiment.sample_name.like(sample.sample_name) |
sample.sample_type.like(sample_type_I) |
sample.sample_id.like(sample_description.sample_id) |
experiment.id.asc() |
sample.sample_dilution.desc() |
sample_description.sample_name_abbreviation.asc() |
sample.sample_name.asc() |
sample_description.sample_replicate.asc() |
sample_description.sample_desc.desc() |
all() |
experiment.id.asc() |
sample.sample_dilution.desc() |
sample_description.sample_replicate.asc() |
sample_description.sample_desc.desc() |
sample.sample_name.asc() |
all() |
data_O.append(data_tmp) |
print('no data found for experiment ' + experiment_id_I + ' and sample_type' + sample_type_I) |
print(e) |
delete_sample_experimentIDAndSampleID_experiment(self,dataListDelete_I) |
self.session.query(experiment) |
experiment.id.like(d['experiment_id']) |
sample.sample_id.like(d['sample_id']) |
experiment.sample_name.like(sample.sample_name) |
print('row not found') |
print(d) |
deletes.append(delete) |
print(e) |
self.session.commit() |
delete_sample_experimentIDAndSampleID_sample(self,dataListDelete_I) |
self.session.query(sample) |
experiment.id.like(d['experiment_id']) |
sample.sample_id.like(d['sample_id']) |
experiment.sample_name.like(sample.sample_name) |
print('row not found') |
print(d) |
deletes.append(delete) |
print(e) |
self.session.commit() |
delete_sample_experimentIDAndSampleID_sampleDescription(self,dataListDelete_I) |
self.session.query(sample_description) |
experiment.id.like(d['experiment_id']) |
sample.sample_id.like(d['sample_id']) |
experiment.sample_name.like(sample.sample_name) |
sample_description.sample_id.like(sample.sample_id) |
print('row not found') |
print(d) |
deletes.append(delete) |
print(e) |
self.session.commit() |
delete_sample_experimentIDAndSampleID_sampleStorage(self,dataListDelete_I) |
self.session.query(sample_storage) |
experiment.id.like(d['experiment_id']) |
sample.sample_id.like(d['sample_id']) |
experiment.sample_name.like(sample.sample_name) |
sample_storage.sample_id.like(sample.sample_id) |
print('row not found') |
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