code stringlengths 3 6.57k |
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self.ui.importLabelButton.connect("clicked(bool) |
self.ui.labelComboBox.connect("currentIndexChanged(int) |
self.ui.dgUpdateButton.connect("clicked(bool) |
self.ui.dgUpdateCheckBox.setStyleSheet("padding-left: 10px;") |
self.ui.scribblesMethodSelector.connect("currentIndexChanged(int) |
self.ui.paintScribblesButton.setIcon(self.icon("paint.png") |
self.ui.paintScribblesButton.setToolTip("Paint scribbles for selected scribble layer") |
self.ui.eraseScribblesButton.setIcon(self.icon("eraser.png") |
self.ui.eraseScribblesButton.setToolTip("Erase scribbles for selected scribble layer") |
self.ui.updateScribblesButton.setIcon(self.icon("segment.png") |
self.ui.brushSizeSlider.connect("valueChanged(double) |
self.ui.brushSizeSlider.setToolTip("Change brush size for scribbles tool") |
self.ui.brush3dCheckbox.stateChanged.connect(self.on3dBrushCheckbox) |
self.ui.brush3dCheckbox.setToolTip("Use 3D brush to paint/erase in multiple slices in 3D") |
self.ui.updateScribblesButton.clicked.connect(self.onUpdateScribbles) |
self.ui.paintScribblesButton.clicked.connect(self.onPaintScribbles) |
self.ui.eraseScribblesButton.clicked.connect(self.onEraseScribbles) |
self.ui.scribblesLabelSelector.connect("currentIndexChanged(int) |
self.ui.scribblesLabelSelector.addItem(self.icon("fg_green.png") |
self.ui.scribblesLabelSelector.addItem(self.icon("bg_red.png") |
self.ui.scribblesLabelSelector.setCurrentIndex(0) |
self.ui.scribblesCollapsibleButton.setEnabled(False) |
self.ui.embeddedSegmentEditorWidget.setMRMLScene(slicer.mrmlScene) |
self.ui.embeddedSegmentEditorWidget.setSegmentationNodeSelectorVisible(False) |
self.ui.embeddedSegmentEditorWidget.setMasterVolumeNodeSelectorVisible(False) |
self.initializeParameterNode() |
self.updateServerUrlGUIFromSettings() |
self.onClickFetchInfo() |
slicer.util.settingsValue("MONAILabel/askForUserName", False, converter=slicer.util.toBool) |
qt.QInputDialog() |
slicer.util.settingsValue("MONAILabel/clientId", None) |
qt.QSettings() |
settings.setValue("MONAILabel/clientId", text) |
cleanup(self) |
self.removeObservers() |
shutil.rmtree(self.tmpdir, ignore_errors=True) |
enter(self) |
self.initializeParameterNode() |
self.updateGUIFromParameterNode() |
exit(self) |
self.removeObserver(self._parameterNode, vtk.vtkCommand.ModifiedEvent, self.updateGUIFromParameterNode) |
onSceneStartClose(self, caller, event) |
self._volumeNodes.clear() |
self.setParameterNode(None) |
self.samples.clear() |
self.onClearScribbles() |
resetFiducial(self, fiducialWidget, fiducialNode, fiducialNodeObservers) |
fiducialWidget.setPlaceModeEnabled(False) |
slicer.mrmlScene.RemoveNode(fiducialNode) |
self.removeFiducialNodeObservers(fiducialNode, fiducialNodeObservers) |
onSceneEndClose(self, caller, event) |
self.initializeParameterNode() |
onSceneEndImport(self, caller, event) |
self.updateGUIFromParameterNode() |
initializeParameterNode(self) |
self.setParameterNode(self.logic.getParameterNode() |
self._parameterNode.GetNodeReference("InputVolume") |
slicer.mrmlScene.GetFirstNodeByClass("vtkMRMLScalarVolumeNode") |
self._parameterNode.SetNodeReferenceID("InputVolume", firstVolumeNode.GetID() |
setParameterNode(self, inputParameterNode) |
self.logic.setDefaultParameters(inputParameterNode) |
self.removeObserver(self._parameterNode, vtk.vtkCommand.ModifiedEvent, self.updateGUIFromParameterNode) |
self.addObserver(self._parameterNode, vtk.vtkCommand.ModifiedEvent, self.updateGUIFromParameterNode) |
self.updateGUIFromParameterNode() |
monitorTraining(self) |
self.isTrainingRunning(check_only=False) |
status.get("status") |
self.logic.info() |
info.get("train_stats") |
next(iter(train_stats.values() |
train_stats.get("total_time") |
train_stats.get("epoch", 1) |
train_stats.get("total_epochs", 1) |
max(1, 100 * current / total) |
self.ui.trainingProgressBar.setValue(percent) |
self.ui.trainingProgressBar.setToolTip(f"{current}/{total} epoch is completed") |
train_stats.get("best_metric", 0) |
self.updateAccuracyBar(dice) |
print("Training completed") |
self.ui.trainingProgressBar.setValue(100) |
self.timer.stop() |
self.ui.trainingProgressBar.setToolTip(f"Training: {status.get('status', 'DONE') |
self.ui.trainingButton.setEnabled(True) |
self.ui.stopTrainingButton.setEnabled(False) |
self.fetchInfo() |
updateGUIFromParameterNode(self, caller=None, event=None) |
updateParameterNodeFromGUI (it could cause infinite loop) |
slicer.util.settingsValue("MONAILabel/fileExtension", self.file_ext) |
self.ui.inputSelector.clear() |
self.ui.inputSelector.addItem(v.GetName() |
self.ui.inputSelector.setToolTip(self.current_sample.get("name", "") |
self.ui.inputSelector.setCurrentIndex(self.ui.inputSelector.findText(self._volumeNode.GetName() |
self.ui.inputSelector.setEnabled(False) |
self.ui.uploadImageButton.setEnabled(False) |
slicer.mrmlScene.GetFirstNodeByClass("vtkMRMLScalarVolumeNode") |
slicer.mrmlScene.GetFirstNodeByClass("vtkMRMLScalarVolumeNode") |
self.initSample({"id": self._volumeNode.GetName() |
self.ui.inputSelector.setEnabled(False) |
self.ui.uploadImageButton.setEnabled(self.current_sample and self.current_sample.get("session") |
self.updateSelector(self.ui.segmentationModelSelector, ["segmentation"], "SegmentationModel", 0) |
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